Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01324 and RBAM_008140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_01324___yfkF.1.9828.seq
# -bsequence dna-align/RBAM_008140___yfkF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01324___yfkF-RBAM_008140___yfkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01324___yfkF-RBAM_008140___yfkF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01324___yfkF
# 2: RBAM_008140___yfkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1205
# Identity: 892/1205 (74.0%)
# Similarity: 892/1205 (74.0%)
# Gaps: 55/1205 ( 4.6%)
# Score: 3182.0
#
#
#=======================================
BSNT_01324___ 1 ATGTCACGATTTCATTTCTTTATCCTTGTCTTGCTCGTATCCATTTCCGG 50
|||||||||.|..|.||||||||..|.||..||||.||.|||||.|||||
RBAM_008140__ 1 ATGTCACGACTGTACTTCTTTATTTTGGTTCTGCTTGTTTCCATCTCCGG 50
BSNT_01324___ 51 GTTTTCACAAGGCATGCTGCTGCCTGTCATTTCAATCATTTTTGAAACAA 100
.|||||.|||||||||||.|||||.||.||.||..|||||||||||||.|
RBAM_008140__ 51 ATTTTCCCAAGGCATGCTTCTGCCGGTGATCTCCGTCATTTTTGAAACGA 100
BSNT_01324___ 101 ATGGAGAATCCGCTGCTATCAACGGCCTGCACGCGACCGGGCTGTATATC 150
|.||.|||||.||.|||||.|||||.||.|||||.|||||.||.||||||
RBAM_008140__ 101 ACGGGGAATCAGCCGCTATAAACGGACTTCACGCAACCGGCCTTTATATC 150
BSNT_01324___ 151 GGTGTGCTTTTGGCTTCGCCGTTTATGGAAGCGCCGCTCAGAAAGCTCGG 200
||.||||||.||||.||||||||||||||.||.|||||..|.||||||||
RBAM_008140__ 151 GGCGTGCTTCTGGCGTCGCCGTTTATGGAGGCCCCGCTACGCAAGCTCGG 200
BSNT_01324___ 201 GTTCAAGCCGCTGATCGTCATGGGCGGAAGCATTGTCATTTTAAGCTTAT 250
.|||||.||.|||||.||||||||||||....||||.||..|.|||||||
RBAM_008140__ 201 ATTCAAACCTCTGATGGTCATGGGCGGATTTCTTGTTATCATCAGCTTAT 250
BSNT_01324___ 251 TCGGATTTATTTGGCTTCAGTCAGTTTGGGTCTGGTTCCTGCTTCGCCTG 300
||.|.||||||||||||||.||..|.|||.|.|||||..|.|||||.|||
RBAM_008140__ 251 TCAGTTTTATTTGGCTTCAATCCATATGGTTATGGTTTTTTCTTCGGCTG 300
BSNT_01324___ 301 TTCATTGGAATCGGCGACCACATGCTTCACTTTTCTACGCAAACGTGGGT 350
.|.||.||||||||.||.||.|||||.||.|||||.||.|||||||||||
RBAM_008140__ 301 CTTATCGGAATCGGGGATCATATGCTGCATTTTTCAACCCAAACGTGGGT 350
BSNT_01324___ 351 GACCTCCATGTCA-----TCAAAACAAAATCGCGGAAGAAACCTGTCTAT 395
|||.||.|.|||| .|.||||| |.|||||||||.|.||..|
RBAM_008140__ 351 GACGTCAAAGTCAACGCCCCGAAACA-----GAGGAAGAAACATTTCGCT 395
BSNT_01324___ 396 TTACGGGCTTTCCTTTGGCCTTGGCTTTGCCGCAGGCCCGTTCATGGTGC 445
.|||||.||.|||||.||.||.||.||.||.|..||||||||||||||.|
RBAM_008140__ 396 GTACGGACTGTCCTTCGGGCTCGGATTCGCTGTCGGCCCGTTCATGGTCC 445
BSNT_01324___ 446 CGCTTGTCAAGCTGAGTCCGTCGCTTCCTTTTATCGTGTCCGGCTGCATC 495
|.|||||.||....||||||||.|||||.||||||||.||||||||.|||
RBAM_008140__ 446 CTCTTGTGAAAACAAGTCCGTCCCTTCCGTTTATCGTATCCGGCTGTATC 495
BSNT_01324___ 496 AGTCTGTTTGCGTGGCTTTTTGTTTTCTTTC-TACAAAATGCATACCCGG 544
|||||....||.|||||.|||||.|| |.|| |||..||.|..|||||||
RBAM_008140__ 496 AGTCTTGCCGCCTGGCTGTTTGTATT-TGTCTTACGTAACGAGTACCCGG 544
BSNT_01324___ 545 ---AAACCAGTCCTCATGAAACCAAATC---AGACAATAGTTTCAGGCGA 588
|| .||||..||||||| ||| .|||||.||....|..||.
RBAM_008140__ 545 CGCAA---GGTCCGGATGAAAC---ATCCGGGGACAACAGCGCAAAACGG 588
BSNT_01324___ 589 TTTTATCAGGCCATGCTGTTTGGGTGGGTTGCCTTTATGCCTACATTTGG 638
|||||.|..|||.|.||.||.||.|||||.||.|||.|.||..|.||.||
RBAM_008140__ 589 TTTTACCGCGCCCTTCTTTTCGGCTGGGTCGCTTTTCTCCCGGCTTTCGG 638
BSNT_01324___ 639 CTATGGCTTTTTGGAAACGGCGCTGAACGGAAGCTTTCCGGTGTACGCGC 688
.||.||.|||||.||||||||||||||||||||||||||.||||||||.|
RBAM_008140__ 639 GTACGGTTTTTTAGAAACGGCGCTGAACGGAAGCTTTCCCGTGTACGCCC 688
BSNT_01324___ 689 TCCGTTTGGGGATATCAGTAGACGCAGTAGCGATCATCCTTCCCGCATTT 738
|.||.||.||.|||||.||.||.||.||.|||.|.||..|.|||||.|||
RBAM_008140__ 689 TGCGCTTAGGCATATCCGTCGATGCCGTCGCGCTGATATTGCCCGCTTTT 738
BSNT_01324___ 739 GCGATTGGAAGCATTATTTTTCAGTTTCCGCTCGGCATCCTCAGCGATAA 788
||.||.|||||.|||.|.||.|||||.||.|||||..|..|.||||||..
RBAM_008140__ 739 GCCATCGGAAGTATTGTATTCCAGTTCCCTCTCGGTTTATTAAGCGATCG 788
BSNT_01324___ 789 ATACGGCAGGCGGAA----TGTGCTGCTGGTGATTTTACTGACTGGGGCT 834
||.|||.| ||| |||.|||||.||.||.|||.|.||.||.||.
RBAM_008140__ 789 ATTCGGGA----GAAAACGTGTCCTGCTCGTCATCTTATTAACGGGTGCC 834
BSNT_01324___ 835 CTTTGCTTTTTCATCGCCGGTGTATTTCCTTCGCCTTACGTGATCGGCGG 884
|||||||||||.|..|||||..|.|||||.|||||||..||.||||||||
RBAM_008140__ 835 CTTTGCTTTTTGACGGCCGGACTGTTTCCGTCGCCTTCTGTCATCGGCGG 884
BSNT_01324___ 885 CTGCTTTTTTATTGCGGGAATGGCAGTCGGATCA--ACCTTTACACTTGG 932
|||||||||.|..|||||||||||.||||| || |..|||.|.||.||
RBAM_008140__ 885 CTGCTTTTTCACGGCGGGAATGGCGGTCGG--CAGTATGTTTTCCCTCGG 932
BSNT_01324___ 933 CATCAGCTATATGACAGATCTTCTTCCGCCTCATCTCCTGCCGGCGGGAA 982
||||||||||||||..||.||.||.|||.|.|||||.|||||||||||.|
RBAM_008140__ 933 CATCAGCTATATGAGCGACCTGCTGCCGTCCCATCTGCTGCCGGCGGGCA 982
BSNT_01324___ 983 ACCTGCTTTGCGGCATTACATTCAGTCTCGGCAGCATCCTCGGTCCGGTT 1032
|.|||||.|||||||||.|.|||||.|||||||||||..||||.|||||.
RBAM_008140__ 983 ATCTGCTCTGCGGCATTTCCTTCAGCCTCGGCAGCATGATCGGCCCGGTG 1032
BSNT_01324___ 1033 GCCGGCGGCTGGTATATGCAGAC-ATTTGAAAGCGCAAACTTGTTCTACT 1081
||.||||||||||||||||| || .|||||||||||.||.|||||.||||
RBAM_008140__ 1033 GCGGGCGGCTGGTATATGCA-ACGGTTTGAAAGCGCCAATTTGTTTTACT 1081
BSNT_01324___ 1082 TCATTACTCTCACGCTTAGCGCTG--TGTGGCTGGCCCTTGTGCT--GGG 1127
|.|||||..|.|..|| |..||| |.|||||.||.||.|| || |||
RBAM_008140__ 1082 TTATTACGGTGATTCT--GGTCTGTATTTGGCTTGCGCTCGT-CTTCGGG 1128
BSNT_01324___ 1128 CAAACCGAAAAGC-TGGTCACCG--GCTGAAACCTATTCTT---CATCTT 1171
.|||| ||||| ..||| ||| .|.|||.||.|||||| |..|.|
RBAM_008140__ 1129 AAAAC---AAAGCACAGTC-CCGCATCCGAATCCCATTCTTTTCCGGCCT 1174
BSNT_01324___ 1172 CTTAA 1176
|.|||
RBAM_008140__ 1175 CATAA 1179
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