Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01322 and RBAM_008130

See Amino acid alignment / Visit BSNT_01322 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_01322___yfkH.1.9828.seq
#    -bsequence dna-align/RBAM_008130___yfkH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01322___yfkH-RBAM_008130___yfkH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01322___yfkH-RBAM_008130___yfkH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01322___yfkH
# 2: RBAM_008130___yfkH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 851
# Identity:     644/851 (75.7%)
# Similarity:   644/851 (75.7%)
# Gaps:          34/851 ( 4.0%)
# Score: 2397.0
# 
#
#=======================================

BSNT_01322___      1 ATGAGTTTTTTGAAAGAGC--TTTTCAGCAGATACACCCTTCATGAAGGA     48
                     |||||||||.|.||.||||  |||.||  ||.|...|.||.|||||||||
RBAM_008130__      1 ATGAGTTTTATAAAGGAGCTGTTTGCA--AGGTTTTCTCTCCATGAAGGA     48

BSNT_01322___     49 CAAAGTAAATCAGCGGAGCTGGCGTACTTTTTTCTATTGTCACTGTTTCC     98
                     |||||||||||.||||||||||||||.|||||.||..|||||.|||||||
RBAM_008130__     49 CAAAGTAAATCGGCGGAGCTGGCGTATTTTTTCCTGCTGTCATTGTTTCC     98

BSNT_01322___     99 GTTTTTGATTTTTATGCTGACGCTCACCGCGTATCTTCCGCTTTCTACCG    148
                     |||..|||||||.|||||||||||||||||.||||||||..|.||..|.|
RBAM_008130__     99 GTTGATGATTTTCATGCTGACGCTCACCGCCTATCTTCCCATATCGGCAG    148

BSNT_01322___    149 ATGATGTTTTAGGAGTCATAGAACAATATGCTCCCGCCAGTGCGATGTCT    198
                     |.||.||..|.||.|...|.||.|||||.||.||||.|||.||.|||||.
RBAM_008130__    149 AAGACGTGCTCGGGGCGGTCGATCAATACGCGCCCGACAGCGCCATGTCC    198

BSNT_01322___    199 CTCGTTGAATCCATTACCCATCAAACCTTAAATAATCGAAATGGCGG--T    246
                     .|.||..|||||||.||..|.|||||..|.||.||.||||..|||||  |
RBAM_008130__    199 ATGGTGAAATCCATAACGGAGCAAACGCTGAACAAGCGAAGCGGCGGACT    248

BSNT_01322___    247 TTGCTGTCATTCGGGATTATCGCCG-CATTATGGTCTGCGTCTAATGGAA    295
                     ||  ||||||||||||||||||||| || |.|||||.||.||.|||||.|
RBAM_008130__    249 TT--TGTCATTCGGGATTATCGCCGTCA-TCTGGTCGGCTTCGAATGGTA    295

BSNT_01322___    296 TGAACGCGATCGTCCGGTCGCTGAACCACGCGTATGATGTGGAAGAAAAC    345
                     ||||||||||.|||.|..|..|.|||||.||.||.||.||.||.||||||
RBAM_008130__    296 TGAACGCGATTGTCAGAGCATTTAACCATGCCTACGAAGTCGAGGAAAAC    345

BSNT_01322___    346 CGCTCTTTTATCATTGTTCGTTTAACCTCGATTTTTTTGACGATTGCCAT    395
                     |||||.||||||||..||||..|.|||||.||||||||.||.||.||.||
RBAM_008130__    346 CGCTCATTTATCATCATTCGCCTGACCTCAATTTTTTTAACCATCGCGAT    395

BSNT_01322___    396 GGTATTTACGATTTTAGTGGCTTTGCTTCTGCCGGTATTTGGCCGGGAGA    445
                     |||..|||||||||||.|.||.||||||||||||||.||.|||.|.||.|
RBAM_008130__    396 GGTGGTTACGATTTTAATCGCATTGCTTCTGCCGGTGTTCGGCAGAGAAA    445

BSNT_01322___    446 TTGGAAGGCTCGCTTCTGACTTTGTCGGCGCGTCGGATCTGTTTTTATCC    495
                     |.||||.|||.||..|.||.||..|||||||.||.|..||||||||....
RBAM_008130__    446 TCGGAATGCTGGCCGCAGATTTCATCGGCGCCTCCGGCCTGTTTTTGCAG    495

BSNT_01322___    496 GTCTGGGCCGCCATTCGCTGGGGTGTCAGCCCGCTTGTGCTTTTGATTGT    545
                     ||.|||.|.|...|.|||||||||.||||.||||||.|.|||||.|||||
RBAM_008130__    496 GTGTGGTCGGTTGTCCGCTGGGGTATCAGTCCGCTTATCCTTTTAATTGT    545

BSNT_01322___    546 TTTTTCCGCGCTGTATGTGATTGCGCCGAACAAAAAGCTGTCTCTCCGGT    595
                     .|||.|||||||.||..|..|.||||||||.||||.|||.||.|||||.|
RBAM_008130__    546 GTTTACCGCGCTTTACATTTTCGCGCCGAATAAAAGGCTTTCCCTCCGTT    595

BSNT_01322___    596 TTGTCATGCCGGGTGCGGTCTTTGCGACCATCGGCTGGATCGTTGTCAGC    645
                     ||||..|||||||.||.||.||||||.|...|||||||||..|.|||||.
RBAM_008130__    596 TTGTGCTGCCGGGAGCCGTATTTGCGGCAGCCGGCTGGATTATCGTCAGT    645

BSNT_01322___    646 ACATTGTTTTCATTTTACGTCAGCACGTTTGCGAACTATAGCGCCACTTA    695
                     |...||||.||||||||||||.||||.|||||.|||||.||||||||.||
RBAM_008130__    646 ATGCTGTTCTCATTTTACGTCGGCACCTTTGCCAACTACAGCGCCACATA    695

BSNT_01322___    696 CGGGAGCATCGGGGGAATCATCGTTCTGATGATTTGGTTTTACTTGAGCG    745
                     ||||||||||||||||||.|||||.||.|||||.|||||||||.|.| ||
RBAM_008130__    696 CGGGAGCATCGGGGGAATTATCGTCCTTATGATCTGGTTTTACCTTA-CG    744

BSNT_01322___    746 G---CATT--TTAATTATCCTAGGCGGAGAAATCAACGCTCTTTTACATA    790
                     |   ||.|  |.|.||    ||||.||||||||||||||.||||||||||
RBAM_008130__    745 GGAACACTGCTGATTT----TAGGAGGAGAAATCAACGCGCTTTTACATA    790

BSNT_01322___    791 AACGTAAAAAGCTTCCTGATGAAAATCCCTACC-------------ATTA    827
                     ||||||||||||||||||||||||||||.||||             | ||
RBAM_008130__    791 AACGTAAAAAGCTTCCTGATGAAAATCCGTACCGCGGGAGCAAGCTA-TA    839

BSNT_01322___    828 G    828
                     |
RBAM_008130__    840 G    840


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01322 and RBAM_008130

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
