Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01321 and RBAM_008120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_01321___yfkI.1.9828.seq
# -bsequence dna-align/RBAM_008120___yfkI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01321___yfkI-RBAM_008120___yfkI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01321___yfkI-RBAM_008120___yfkI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01321___yfkI
# 2: RBAM_008120___yfkI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 358
# Identity: 221/358 (61.7%)
# Similarity: 221/358 (61.7%)
# Gaps: 68/358 (19.0%)
# Score: 578.5
#
#
#=======================================
BSNT_01321___ 1 ATGAA-CAACGA-ACGTTTAATGCTGAAAGGGATATTTCTCGGAGCTGCG 48
||||| || || |||..|.|||...||||.|||..|..||||.|||||.
RBAM_008120__ 1 ATGAAGCA--GACACGCATCATGGCAAAAGCGATTCTGATCGGCGCTGCC 48
BSNT_01321___ 49 GCAGGCGCGGCGTTATCACTGCTC-------CATAAGCCGACAAGACAGG 91
||.|||| .|.||||| || |||||||||||.|||.|||
RBAM_008120__ 49 GCCGGCG------GAGCACTG-TCCTTATTACATAAGCCGACGAGAGAGG 91
BSNT_01321___ 92 CGTG----CGG--CATGAGA-------TGGCTGACATGCAAGCATAAACT 128
|.|| ||| |||| || .||| |.|.||| .||| |
RBAM_008120__ 92 CATGTTTCCGGAACATG-GACGCGTGTAGGC-GGCGTGC-GGCA-----T 133
BSNT_01321___ 129 TTCACTGTATAAAAGCAATCC-GGAGCTGTTAAAAAACA-----CTGTTA 172
||.||.| |||| .|||| |.|||..|.|||.|.|| |||
RBAM_008120__ 134 TTTACCG---AAAA--CATCCTGAAGCCCTGAAACAGCAGGCTTCTG--- 175
BSNT_01321___ 173 TCACAAAAGTGGATGAGGCCAAAAAGCTCGCCCAAACGCTTTCAAAGGAA 222
|||||.|||||.|.|..||||...|||||.|.||..|.|| ||||
RBAM_008120__ 176 ---CAAAACTGGATCAAGTGAAAATCATCGCCAATACCGTATC---GGAA 219
BSNT_01321___ 223 G-TC-GA-CTTTGTGAACCAGCAGGTGAAAGAGCTGAAGAAAACAACGCC 269
| || || .|||.|.|||..||||.|.|...||||||||.|.||.|||||
RBAM_008120__ 220 GATCTGAGTTTTTTAAACGGGCAGATCACCAAGCTGAAGCAGACGACGCC 269
BSNT_01321___ 270 GCAAGTGATGGAACTCGTGCAAGAAACGAAAGAGCATTTTTCAAAAAA-- 317
|||.||.||.||.||..|..||||||||||.|||||||||||.|||||
RBAM_008120__ 270 GCAGGTCATTGACCTGTTAAAAGAAACGAAGGAGCATTTTTCGAAAAACG 319
BSNT_01321___ 318 ATGA---- 321
||.|
RBAM_008120__ 320 ATCATTGA 327
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