Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01316 and RBAM_008090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:00
# Commandline: needle
# -asequence dna-align/BSNT_01316___yfkL.1.9828.seq
# -bsequence dna-align/RBAM_008090___yfkL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01316___yfkL-RBAM_008090___yfkL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01316___yfkL-RBAM_008090___yfkL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01316___yfkL
# 2: RBAM_008090___yfkL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1359
# Identity: 763/1359 (56.1%)
# Similarity: 763/1359 (56.1%)
# Gaps: 333/1359 (24.5%)
# Score: 1874.5
#
#
#=======================================
BSNT_01316___ 1 ATGCAAACGACATCT--ATCAAAACAGCATCCGGAATGTATATCAACTAC 48
|||.||| ||||.| |.|||||..|||.|.||..|.|||||.||.||.
RBAM_008090__ 1 ATGAAAA--ACATATACACCAAAATGGCAGCGGGTCTTTATATTAATTAT 48
BSNT_01316___ 49 TTCTTTCTGGGGATGGTCAACATCATTCTCGCATCCAATATGTCTTCATT 98
|||.|.|||||.|||.||||.||.|||.||||||||||||||....||||
RBAM_008090__ 49 TTCCTGCTGGGCATGATCAATATTATTATCGCATCCAATATGGAGGCATT 98
BSNT_01316___ 99 AACAAAACAGTGGAATACCGATCCG--ACCGGCATCAGTTATGTCATTG- 145
|.||||||||....|||| ||||| .||||..||||.||| |||
RBAM_008090__ 99 ATCAAAACAGCTTCATAC--ATCCGCAGCCGGGGTCAGCTAT----TTGG 142
BSNT_01316___ 146 ---CCGCTATCGGGTTTGGCAAACTGCTGACATACGGCATTTCCGGC--- 189
||||.||||||.|.||.||.||| ||||| ||
RBAM_008090__ 143 TCTCCGCCATCGGGATCGGGAAGCTG------------ATTTC--GCTTC 178
BSNT_01316___ 190 -GTT----------CTATCAGATAAAATCGGCAGAAAGCCGCTTGT--TG 226
||| ||.||.||||.|.||||.|||..||||.||.| ||
RBAM_008090__ 179 TGTTTGCCGGGAAGCTTTCGGATACATTCGGGAGACGGCCGTTTATCGTG 228
BSNT_01316___ 227 TCG------CTTCTGCGGGAATTATGGCCGTCTTTT--TAGTCGGTATTC 268
||| .||||| ||| |...|||| ||.||||.||||
RBAM_008090__ 229 TCGGGCGCCTTTCTG-------TAT---CTGATTTTCCTAATCGGAATTC 268
BSNT_01316___ 269 CTTTATCACCGAGCTATGAGCTGGCGTTTGTGTTCGCCTTATTAGCCGGA 318
|..|.||..|.|.||||..|...||||||.|.||||||.|.||.|||||.
RBAM_008090__ 269 CGCTTTCGACAAACTATACGGCCGCGTTTATCTTCGCCATTTTCGCCGGG 318
BSNT_01316___ 319 GTCGCAAATTCAGCGATGGATGCCGGAACATATCCGGCCCTAACCGAGCT 368
.||||.|||||.....|||||.||||.|||||||||||.||.|..||...
RBAM_008090__ 319 ATCGCCAATTCCTTTTTGGATTCCGGGACATATCCGGCGCTTATTGAAGG 368
BSNT_01316___ 369 CTTTCCG------------TCTGCTTCCG-GTTCGGCGAATGTCTTGGTC 405
.|||||| |||||..||| ||| || ||
RBAM_008090__ 369 ATTTCCGAAAAACGCAAGCTCTGCAACCGTGTT-----AA--------TC 405
BSNT_01316___ 406 AAAGCCTTTATGTCTGTCGGGGCCGCACTTTTGCCGCTTTTGATCACATT 455
|||||.|||.|.||..||||.||..|..|..|.|||.||||.|||.|.||
RBAM_008090__ 406 AAAGCGTTTGTATCCATCGGCGCGACGGTGCTTCCGTTTTTCATCGCGTT 455
BSNT_01316___ 456 TTTAGCAGACCACA-GCA--TGTTTTACG-------GATTTGC------- 488
|.|.||.| ||| ||| ||||||||| |.|||.|
RBAM_008090__ 456 TATTGCGG---ACAGGCATTTGTTTTACGGCTGGACGTTTTTCGTACCGG 502
BSNT_01316___ 489 ---TTTTTATCTGCCGGCAGCGGTCTATCTCCTGAATATTATTTATTTAT 535
||.||.|||.||.| |.||| ||.|.||||| |||
RBAM_008090__ 503 GCATTATTTTCTTCCTG-AACGG-CTTTTTCCTG------------TTA- 537
BSNT_01316___ 536 CAACGCTTTCGTTTCCTAAAAAACATAAGAAACCAACTAATA--GCGGCC 583
||.| ||.||||||| .||.||||||.|| ||..||.| ||||||
RBAM_008090__ 538 -AAAG-TTCCGTTTCC---GAATCATAAGCAA--AAAGAAGACGGCGGCC 580
BSNT_01316___ 584 -AACAGGAA---TCTCCCGTTTTCTTGTCTGA--ACCCGTT----TTTCA 623
.|| |||| ||||| |||||| ||.|||| ||.||
RBAM_008090__ 581 GGAC-GGAAGCCTCTCC---------GTCTGATGACGCGTTCACATTACA 620
BSNT_01316___ 624 ------GAAA------GAAGGCACCGCACTGATTATCATCGGTTTTACAT 661
||.| ||||||...||..|.|||.|..|.||.|||.|||
RBAM_008090__ 621 GCCGTCGATATGGCGCGAAGGCCTTGCGATCATTCTGTTAGGCTTTTCAT 670
BSNT_01316___ 662 CCACGGCTTTATTTACGGTTTCTCAAATCTGGCTCCCGAGCTACGCGCAA 711
|.|||||..|.||||.|.|...||||.|.|||||.||.|..|.||.||||
RBAM_008090__ 671 CTACGGCGCTGTTTATGCTCGTTCAAGTATGGCTTCCTAAGTTCGGGCAA 720
BSNT_01316___ 712 AAAGCAGCCGGTTTAGCTGAATCAGCAT--------------CTGTACAA 747
| |||.|||.| |||| ||||..||
RBAM_008090__ 721 A------CCGTTTTGG--------GCATGCCTGAGGTGCAGGCTGTCAAA 756
BSNT_01316___ 748 CTGCTGAGCTATTATAGTATAGGATCTCTGGCATCTGTTTTATTATTAGC 797
.||.||||||||||.||.||.||..|.||.|..||.||.|||||..|.||
RBAM_008090__ 757 TTGTTGAGCTATTACAGCATCGGTGCGCTTGTGTCCGTATTATTGCTGGC 806
BSNT_01316___ 798 CGTTTTGCTGAACAGATGGGTCAAACCTGTCTTCA-----------TAAC 836
|||..||.|.|||||| ||.| |||| |||.
RBAM_008090__ 807 CGTGCTGTTAAACAGA---GTGA--------TTCAGCCGATTACGGTAAT 845
BSNT_01316___ 837 GCTCTTATATCCTATTAT--------------TACTTTATGTACGCTC-- 870
|.|..|.||.|||.|.|| |.||| ||||
RBAM_008090__ 846 GGTGCTGTACCCTGTGATCGCAGCAATCGCGCTGCTT-------GCTCTG 888
BSNT_01316___ 871 ----GCAGTCAT--GCTGACCGTTCACATCCCAGTTGTGCTGGACATCA- 913
.||.|||| ||.|.|||| || |||| |||||
RBAM_008090__ 889 ATTTTCATTCATCAGCCGGCCGT----AT--CAGT---------CATCAG 923
BSNT_01316___ 914 CTGCCTTTTTCTTAGGCTTTTCAACTGCGGGTGTGTTTCAAATTACCATT 963
|| |||||.||.|.||..|||||||||||||..|..|.|||.|..|.||.
RBAM_008090__ 924 CT-CCTTTGTCATCGGACTTTCAACTGCGGGCATTCTGCAATTGGCGATG 972
BSNT_01316___ 964 ACGTTAATGACAGAGCTTTT-----CTGGAAGCGA-AAAGGAACCGTTAC 1007
|||.|.|||.|.| |||| ||..|| | |||||.||..|.||
RBAM_008090__ 973 ACGGTTATGGCTG---TTTTATTCCCTAAAA---ATAAAGGTACGATCAC 1016
BSNT_01316___ 1008 CGGAA----TTGTAGCGACCGCTTCAAGTCTTGCATC---GATTCTGCTG 1050
| ||||....|..||.||||| ||| ||| .|||.|..|.
RBAM_008090__ 1017 ----ATCTTTTGTTAATATAGCATCAAG-CTT--ATCTTTTATTGTCATT 1059
BSNT_01316___ 1051 CCGATTGCAACAGG-GC-TTATCGCAAAAGCGGGGGGCATCGCTCATATT 1098
|||.|||.|||.|| || .||| |.|||||||..|||.|..|.|.|.||
RBAM_008090__ 1060 CCGCTTGTAACGGGAGCGATAT--CCAAAGCGGCCGGCCTGACGCCTGTT 1107
BSNT_01316___ 1099 TTCATATTCGACTTCGCCATTGCGGTTATCGGAA---CGGCTG-CAGCTG 1144
| |||..||| |.|||||||| ||||.| ||||..
RBAM_008090__ 1108 T-----TTCTGCTT----------GATATCGGAATTGCGGCCGTCAGCGC 1142
BSNT_01316___ 1145 CTTTC-----TTGTATTA-------CAGGTACAAGAAACTGACAGGTGCT 1182
|.||| |||| ||| |.|.|..|||.||.||| ||
RBAM_008090__ 1143 CCTTCTCGCATTGT-TTATCGGAATCCGCTTTAAGCAAGTGA----TG-- 1185
BSNT_01316___ 1183 CAAGCCTAA 1191
.||||||.|
RBAM_008090__ 1186 AAAGCCTGA 1194
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