Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03434 and RBAM_008080

See Amino acid alignment / Visit BSNT_03434 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_03434___aroC.1.9828.seq
#    -bsequence dna-align/RBAM_008080___aroD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03434___aroC-RBAM_008080___aroD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03434___aroC-RBAM_008080___aroD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03434___aroC
# 2: RBAM_008080___aroD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 833
# Identity:     514/833 (61.7%)
# Similarity:   514/833 (61.7%)
# Gaps:         136/833 (16.3%)
# Score: 1425.0
# 
#
#=======================================

BSNT_03434___      1 GTG-AACGTGT-TAACGATTA-AAGGA--GTTTCCATCGGGGAAGGAATG     45
                     .|| ||  |.| |.|||||.| ||..|  ||   ||||||.|||||..|.
RBAM_008080__      1 ATGCAA--TCTATCACGATCAGAAACACGGT---CATCGGCGAAGGGCTT     45

BSNT_03434___     46 CCGAAAATCATCGTTCCGCTGATGG----------GAAAGA------CGG     79
                     |||||.|||||.||.||||||||||          ||||||      || 
RBAM_008080__     46 CCGAAGATCATTGTGCCGCTGATGGCGGCCGGAGAGAAAGAACTGCTCG-     94

BSNT_03434___     80 AAAAACAAATTCTGAATGAAGC-----AGAGGCAGTAAAATTACTGAAT-    123
                        ||.||||      ||||||     |.||||               | 
RBAM_008080__     95 ---AAGAAAT------TGAAGCCGTCAACAGGC---------------TT    120

BSNT_03434___    124 ---CCGGACATTGTTGAATGGAGAGTCGACGTATTTGAAAAAGCGAA---    167
                        |||||.||..||||.|||.|    |.||.||.||.|..|||  |   
RBAM_008080__    121 CGCCCGGATATCATTGAGTGGCG----GGCGGATGTGTACGAGC--ATGT    164

BSNT_03434___    168 TGACAG---AGAAGCGGTCACAAAGCTCAT--TTCTAA-GCTTCGTAAAT    211
                     ||||||   .||.||.||   |||...|||  ||..|| |||.||.|||.
RBAM_008080__    165 TGACAGCCTGGACGCCGT---AAAAGACATGCTTGAAATGCTGCGGAAAG    211

BSNT_03434___    212 CTTTAG----AAGACAAGCTATTTCTATTTACATTCAGAACCCACAAAGA    257
                     |...||    ||.|| .||   |.||.||.|||||||||||.||.|||||
RBAM_008080__    212 CCGCAGGCGCAACAC-CGC---TGCTTTTCACATTCAGAACTCATAAAGA    257

BSNT_03434___    258 GGGCGGGAGCATGGAG--ATGGACGAAAGCTCCTATCTTGCTTTGCTGGA    305
                     .|||||.|  ||..||  ||.||.||..|||..||..|||..|||||..|
RBAM_008080__    258 AGGCGGAA--ATAAAGTTATTGATGACCGCTTTTACATTGAATTGCTTAA    305

BSNT_03434___    306 ATCGGCAATCCAAACAAAAGACATCGATCTGATAGATATCGAATTATTTT    355
                     |.|.||.|||.||||||||.||||.||.||...|||..|.||.||.|||.
RBAM_008080__    306 AACCGCCATCGAAACAAAACACATTGACCTTGCAGACGTTGAGTTGTTTA    355

BSNT_03434___    356 CAGGAGATGCAAATGT-AAAGGCGTTAGT-------ATCGCTGGCGGAAG    397
                     |.|||||.||..|.|| |||    |||.|       |.||||    ||||
RBAM_008080__    356 CGGGAGAAGCGGAAGTCAAA----TTAATTGTGAAAACCGCT----GAAG    397

BSNT_03434___    398 AAAACAACGTCTATGTGGTGATGTCAAATCACGACTTTGAAAAAACGCCT    447
                     |.|||..|||.|||||.||.|||||.|||||.||.|||.|..|.||.||.
RBAM_008080__    398 ACAACGGCGTATATGTCGTCATGTCCAATCATGATTTTCATCAGACACCG    447

BSNT_03434___    448 TCGAAAGATGAGATTCTTTCAAGGCTTCGAAAAATGCAGGAATTAGGCGC    497
                     ...|||||.||.||..||||..||||.||.||.|||||||..|..|||||
RBAM_008080__    448 AAAAAAGAAGAAATCATTTCCCGGCTGCGGAACATGCAGGCGTACGGCGC    497

BSNT_03434___    498 GCATATTCCAAAAATGGCTGTCATGC--CAAATGATACTGGAGATCTCCT    545
                     |||.|||||.|||||.||.||.||||  ||||  ..||||.||||.|  |
RBAM_008080__    498 GCACATTCCGAAAATCGCGGTGATGCCGCAAA--GCACTGAAGATGT--T    543

BSNT_03434___    546 AACG-CTGCTT-GATGCGACGTATACAATGAAAACAAAATATGCAGACCG    593
                     ..|| ||..|| |||||.||..|.||.|||||||||.||||.||||||||
RBAM_008080__    544 TTCGTCTTATTGGATGCCACTCACACGATGAAAACACAATACGCAGACCG    593

BSNT_03434___    594 TCCCATTATTACAATGTCAATGGCTGCAACAGGGCTTATCAGCAGGCTGA    643
                     .||.||.||.||.|||||||||||.|.||||||.||.||||||.|.|||.
RBAM_008080__    594 GCCGATCATCACGATGTCAATGGCGGGAACAGGTCTGATCAGCCGCCTGG    643

BSNT_03434___    644 GCGGTGAGGTTTTTGGATCGGCTTGTACTTTTGGAGCTGGAGAAGAGGCG    693
                     .|||.||.||.||.||.||.||.||.||.||.|||||.||..||||.||.
RBAM_008080__    644 CCGGCGAAGTCTTCGGCTCAGCGTGCACGTTCGGAGCGGGCAAAGAAGCA    693

BSNT_03434___    694 TCTGCACCAGGCCAAATTCCTGTTTCTGAGCTAAGGAGTGT-CTTAGATA    742
                     ||.||.||.||.||||||||.|||...||..|..|.||.|| ||.|| .|
RBAM_008080__    694 TCAGCGCCCGGACAAATTCCCGTTGAAGAATTGCGCAGCGTACTCAG-CA    742

BSNT_03434___    743 TTTTGCATAAA-------AACACACGGGGGTAG    768
                     ||||..|||||       ||             
RBAM_008080__    743 TTTTAAATAAACATATGTAA-------------    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03434 and RBAM_008080

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
