Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01313 and RBAM_008040

See Amino acid alignment / Visit BSNT_01313 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:00
# Commandline: needle
#    -asequence dna-align/BSNT_01313___yfkM.1.9828.seq
#    -bsequence dna-align/RBAM_008040___yfkM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01313___yfkM-RBAM_008040___yfkM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01313___yfkM-RBAM_008040___yfkM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01313___yfkM
# 2: RBAM_008040___yfkM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 521
# Identity:     412/521 (79.1%)
# Similarity:   412/521 (79.1%)
# Gaps:           7/521 ( 1.3%)
# Score: 1631.0
# 
#
#=======================================

BSNT_01313___      1 ATGGGGAAAAAAATTGCAGTTGTTTTAACAGATTATTTTGAGGACAGCGA     50
                     |||||.|||||||||||||||||.|||||.||||||||||||||...|||
RBAM_008040__      1 ATGGGTAAAAAAATTGCAGTTGTATTAACCGATTATTTTGAGGATGTCGA     50

BSNT_01313___     51 GTACACTGAGCCTGCGAAAGCCTTTAAAGAAGCGGGACATGAACTGACTG    100
                     |||.|||||.|||||||||||.||||||||.|||||.||||||.|.||.|
RBAM_008040__     51 GTATACTGAACCTGCGAAAGCTTTTAAAGATGCGGGTCATGAATTAACCG    100

BSNT_01313___    101 TCATCGAAAAAGAAAAAGGAAAAACAGTAAAAGGCAAGCAGGGAAAAGCG    150
                     |.||.|||.|.|||||||||||||||||.||||||||.||.||..|||||
RBAM_008040__    101 TAATTGAACAGGAAAAAGGAAAAACAGTCAAAGGCAAACAAGGGGAAGCG    150

BSNT_01313___    151 GAAGTGACGGTTGACGCGTCCATTGACGACGTAAACCCTTCAGACTTTGA    200
                     |||||||..||.||.||||||||.||.||.|||||.||...|||||||||
RBAM_008040__    151 GAAGTGAAAGTGGATGCGTCCATCGATGATGTAAATCCGAAAGACTTTGA    200

BSNT_01313___    201 TGCGCTTT--TGATTCCCGGAGGATTTTCACCAGACCAGCTTCGCGCTGA    248
                       |||.||  ||||.||.||.|||||.||.||.|||..|||.||.||.||
RBAM_008040__    201 --CGCATTGCTGATCCCGGGCGGATTCTCTCCTGACATGCTGCGTGCGGA    248

BSNT_01313___    249 CGATCGTTTCGTCCAATTTACAAAAGCGTTTATGACTGACAAAAAACCGG    298
                     .||.|||||||||||||||.|.||||||||||||..|||.||||||||||
RBAM_008040__    249 TGACCGTTTCGTCCAATTTGCCAAAGCGTTTATGGATGATAAAAAACCGG    298

BSNT_01313___    299 TATTCGCCATTTGCCACGGCCCGCAGCTTTTAATCAATGCGAAAGCGCTC    348
                     |.||||||||.||.|||||.||.||||||.|.|||||.||||||||..|.
RBAM_008040__    299 TGTTCGCCATCTGTCACGGACCTCAGCTTCTCATCAACGCGAAAGCATTG    348

BSNT_01313___    349 GACGGCCGAAAAGCGACGGGCTATACGTCCATTCGTGTTGACATGGAAAA    398
                     |||||.||.||||||||.||.|.|||.||.||.||..|.|||||||||||
RBAM_008040__    349 GACGGGCGCAAAGCGACAGGGTTTACATCAATCCGAATCGACATGGAAAA    398

BSNT_01313___    399 CGCCGGTGCCGACGTTGTGGACAAGGAAGTGGTTGTTTGCCAGGATCAAT    448
                     |||.||.||..|.||.|||||..|.|||||.||.||.||||||.|.||..
RBAM_008040__    399 CGCGGGCGCAAATGTGGTGGATGAAGAAGTCGTCGTCTGCCAGAACCAGC    448

BSNT_01313___    449 TGGTCACTAGCCGCACACCGGAAGATATACCGGCATTTAACCGCGAGTCA    498
                     |||||||.||||||||||||||.||.|||||||||||.||||||||.|||
RBAM_008040__    449 TGGTCACAAGCCGCACACCGGATGACATACCGGCATTCAACCGCGAATCA    498

BSNT_01313___    499 TTGGCATTGCTTGAGAAATAA    519
                     ||...|.||||||.|.||   
RBAM_008040__    499 TTAAAACTGCTTGCGTAA---    516


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.