Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01302 and RBAM_007980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_01302___treA.1.9828.seq
# -bsequence dna-align/RBAM_007980___treA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01302___treA-RBAM_007980___treA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01302___treA-RBAM_007980___treA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01302___treA
# 2: RBAM_007980___treA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1720
# Identity: 1296/1720 (75.3%)
# Similarity: 1296/1720 (75.3%)
# Gaps: 68/1720 ( 4.0%)
# Score: 4776.5
#
#
#=======================================
BSNT_01302___ 1 ATGAAAACAGAACA-AACGCCATGGTGGAAAAAAGCTGTGGTTTATCAAA 49
|||||||||| ||| .||.||||||||||||||.||.|.|||.|||||||
RBAM_007980__ 1 ATGAAAACAG-ACAGCACACCATGGTGGAAAAAGGCAGCGGTATATCAAA 49
BSNT_01302___ 50 TTTATCCGAAAAGCTTTAACGATACGACAGGAAACGGTGTCGGCGATCTG 99
||||||||||.||||||||.||||||||.||||||||..||||.||||||
RBAM_007980__ 50 TTTATCCGAAGAGCTTTAATGATACGACGGGAAACGGGATCGGTGATCTG 99
BSNT_01302___ 100 AACGGCATTATTGAAAAGCTTGATTACTT--AAAAACACTTCAGGTGGAT 147
|||||.|||||.||.|||||||||||.|| |.||.|..||.| |.|||
RBAM_007980__ 100 AACGGTATTATCGAGAAGCTTGATTATTTGCAGAAGCTTTTAA--TTGAT 147
BSNT_01302___ 148 GTGCTTTGGCTGACGCCGATTTATGATTCTCCGCAGCATGATAATGGGTA 197
||..|||||||.|||||||||||.|||||.||||||.||||.||.||.||
RBAM_007980__ 148 GTCATTTGGCTTACGCCGATTTACGATTCGCCGCAGAATGACAACGGTTA 197
BSNT_01302___ 198 CGATATTCGTGATTATTACTCGATTTATCCTGAATACGGAACGATGGAGG 247
.||.|||||.|||||||.|.|.||||||...|||||||||||||||||||
RBAM_007980__ 198 TGACATTCGCGATTATTGCACTATTTATGAAGAATACGGAACGATGGAGG 247
BSNT_01302___ 248 ATTTTGAGCGGCTAGTGTC--CGAAGCACATAAAAGAGACCTGAAAGTCG 295
|||||||.||.|| |.|| .|||||.||.|||||||...|.||.||||
RBAM_007980__ 248 ATTTTGAACGCCT--TATCGATGAAGCGCACAAAAGAGGAATCAAGGTCG 295
BSNT_01302___ 296 TCATGGATCTTGTTGTCAATCATACGTCAACAGAGCACAAATGGTTTCGC 345
|||||||||||||.|||||.|||||.|||...|||||..|||||||....
RBAM_007980__ 296 TCATGGATCTTGTCGTCAACCATACATCAGTCGAGCATCAATGGTTCAAA 345
BSNT_01302___ 346 GAGGCGATCTCTTCAATAGACAGCCCGTACCGTGATTTTTATATATGGAA 395
||.|||.||||.|||...|||||.|||||.||.||||||||.||.|||||
RBAM_007980__ 346 GAAGCGGTCTCGTCACCCGACAGTCCGTATCGGGATTTTTACATTTGGAA 395
BSNT_01302___ 396 AGACCCACAGGAAAACGGTTCTGTTCCGACGAACTGGGAATCGAAATTCG 445
||||..|.|||||.||||....|..||||..|||||||||||.|||||||
RBAM_007980__ 396 AGACGGAAAGGAAGACGGCCGGGCGCCGAACAACTGGGAATCAAAATTCG 445
BSNT_01302___ 446 GCGGCTCGGCATGGGAGCTTGACGAAGCATCAGGCCAATACTATTTGCAT 495
||||.||.||.||||||||.|||...||.||||||||..|||||.|||||
RBAM_007980__ 446 GCGGTTCCGCTTGGGAGCTCGACCCGGCGTCAGGCCAGCACTATCTGCAT 495
BSNT_01302___ 496 CTGTTTGATGTGACACAGGCTGATTTGAATTGGGAAAATGAAGAGGTCAG 545
.|.|||||||||.|.|||||.||||||||.|||||||||||||||.|.||
RBAM_007980__ 496 TTATTTGATGTGTCGCAGGCCGATTTGAACTGGGAAAATGAAGAGATGAG 545
BSNT_01302___ 546 AAAGCATGTCTATGACATGATGCATTTTTGGTT-TGAAAAGGGAATAGAC 594
|||.||.||.||.|||||||||||||||||||| .|.|||||| ||.|||
RBAM_007980__ 546 AAAACAGGTTTACGACATGATGCATTTTTGGTTCCGGAAAGGG-ATCGAC 594
BSNT_01302___ 595 GGCTTTAGGCTTGATGTCATCAACCTGATTTCTAAAGATC-AGCGCTTTC 643
|||||..||||.|||||.||||||||.|||||||||||.| |.|| ||||
RBAM_007980__ 595 GGCTTCCGGCTGGATGTGATCAACCTCATTTCTAAAGACCAATCG-TTTC 643
BSNT_01302___ 644 CGAATGCGGAGGAAG---GCGACGGCCGCTCTTTTTACACTGATGGGCCG 690
|..||||.|||||.| |.|||||.|||.|||.|||.||.||.||||||
RBAM_007980__ 644 CTGATGCCGAGGATGGGCGTGACGGGCGCCCTTATTATACGGACGGGCCG 693
BSNT_01302___ 691 CGGGTGCACGAATTTCTGCATGAAATGAAC---GAAAAGGTGTTTTCGCA 737
||.||||||||||||||.|||||.|||||| ||| |||||||||.|
RBAM_007980__ 694 CGCGTGCACGAATTTCTCCATGAGATGAACCGGGAA---GTGTTTTCGAA 740
BSNT_01302___ 738 TTACGACAGCATGACGGTCGGTGAGATGTCTTCAACAACCGTAGACCACT 787
.||.||||||||||||||||||||.|||||.||.|||||.|..|||||||
RBAM_007980__ 741 ATATGACAGCATGACGGTCGGTGAAATGTCCTCGACAACGGCTGACCACT 790
BSNT_01302___ 788 GTATCCGGTATACGAATCCTGACAATAAAGAACTTGATATGACATTCAGC 837
|.||||||||.||.||.|||||.|||||||||||.||||||||.||.|.|
RBAM_007980__ 791 GCATCCGGTACACAAACCCTGAGAATAAAGAACTCGATATGACTTTTAAC 840
BSNT_01302___ 838 TTCCATCATCTCAAGGTTGACTATCCTAACGGCGAAAAATGGGCCTTGGC 887
||.||.|||.|.||.||.||.|||||.||.||.|||||||||||..|.||
RBAM_007980__ 841 TTTCACCATTTAAAAGTGGATTATCCGAATGGTGAAAAATGGGCGCTCGC 890
BSNT_01302___ 888 GCCGTTTGATTTTTTGAAGCTGAAGGAGATCCTATCTGACTGGCAAACGG 937
.||||||||||||.||||||||||...|||..||.|....|||||.||||
RBAM_007980__ 891 TCCGTTTGATTTTCTGAAGCTGAAACGGATTTTAGCGTTTTGGCAGACGG 940
BSNT_01302___ 938 GGATGCACGCAGGAGGAGGATGGAACGCTCTGTTCTGGTGCAATCATGAT 987
.||||||...|||.|||||.||||||||..|.|||||||||||.|||||.
RBAM_007980__ 941 AGATGCAAAAAGGCGGAGGCTGGAACGCATTATTCTGGTGCAACCATGAC 990
BSNT_01302___ 988 CAGCCGCGCGTTGTATCAAGATATGGAGATGATGGCGCATATAGGGTGAA 1037
||||||||.|..|||||.|||||.|||||.||.||||.|||..||..|||
RBAM_007980__ 991 CAGCCGCGGGCCGTATCCAGATACGGAGACGACGGCGTATACCGGACGAA 1040
BSNT_01302___ 1038 ATCGGCGAAAATGCTTGCTACGGCCATTCATTTGATGCAGGGCACGCCTT 1087
|||.||.||||||||.||..|||||||||||.||||||||||||||||||
RBAM_007980__ 1041 ATCAGCCAAAATGCTGGCGGCGGCCATTCATATGATGCAGGGCACGCCTT 1090
BSNT_01302___ 1088 ATATTTATCAGGGCGAGGAGCTGGGGATGACGAATCCGAAGTTCACTGAC 1137
|.||||||||.||.||.|||.|.||.|||...||||||||.|||..||||
RBAM_007980__ 1091 ACATTTATCAAGGTGAAGAGATCGGCATGGGCAATCCGAAATTCGATGAC 1140
BSNT_01302___ 1138 ATAAGCTCCTATCGGGATGTCGAATCGCTGAACATGTATCACGCCTTTAA 1187
||..||||.||.||.|||||||||||..|||||||.||..|.....|.||
RBAM_007980__ 1141 ATCGGCTCATACCGCGATGTCGAATCATTGAACATTTACAAAAAGATGAA 1190
BSNT_01302___ 1188 GGAAAAAGGAATGGCTGATCAAGATATTACAGCCATTTTACAGGCGAAAT 1237
||||.||||..||.|.||..||||.||||..|||||||||.|.|.|||||
RBAM_007980__ 1191 GGAAGAAGGCGTGCCCGAAAAAGACATTATCGCCATTTTAAAAGAGAAAT 1240
BSNT_01302___ 1238 CCCGTGACAATTCCAGAACCCCCGTTCAGTGGGATGCTACGG--AAAATG 1285
|..|.||||||.|.|||||||||.||||||||.| |..||| ...|.|
RBAM_007980__ 1241 CAAGAGACAATGCAAGAACCCCCATTCAGTGGAA--CAGCGGGCCGCACG 1288
BSNT_01302___ 1286 GCGGTTTTACAACGGGCACACCATGGATACCGGTTGCAGGAAATTACCGG 1335
|||||||.||.||||||||.||.|||||.||||..||||...||||.|||
RBAM_007980__ 1289 GCGGTTTCACGACGGGCACGCCTTGGATTCCGGCGGCAGATGATTATCGG 1338
BSNT_01302___ 1336 GAAATCAATGCTGAAGCGGCGCTGAGGGATCAGAATTCGGTGTTTTACCA 1385
||..|.||.||.||||||||..||.||||.|.|.||||..|.||.||.||
RBAM_007980__ 1339 GACGTTAACGCGGAAGCGGCTTTGCGGGACCCGGATTCAATTTTCTATCA 1388
BSNT_01302___ 1386 TTATCAAAAATTGAT-----TCAGATTCGCAAAATG--TATGACATTGTG 1428
||||||.||..|.|| |||| |||.| |||.||||.|||
RBAM_007980__ 1389 TTATCAGAAGCTCATCAAGCTCAG-------AAAGGAATATAACATCGTG 1431
BSNT_01302___ 1429 ACAGAGGGTACGTATGAGATAATTGCAAAGGATGACCCGAACATTTTTGC 1478
||.||.||.||||.||||.|..||||..|.||.||.|||....||.|.||
RBAM_007980__ 1432 ACTGAAGGAACGTTTGAGCTGCTTGCTGAAGACGATCCGGCGGTTCTGGC 1481
BSNT_01302___ 1479 GTATCTTAGACACGGCAGCAATGAAAAGCTGCTCGTG-ATCAATAATTTT 1527
|||..|.||||||||||...|||||||.||||| ||| |||||.||.||.
RBAM_007980__ 1482 GTACGTCAGACACGGCAAGGATGAAAAACTGCT-GTGCATCAACAACTTC 1530
BSNT_01302___ 1528 TACGGGACAGAGGCGGCCTTTACACTGCCGGACTCTTTAGCGCCTGACGA 1577
|||||||.|||.||||.||||||..|.||| |||.| .|||
RBAM_007980__ 1531 TACGGGAAAGAAGCGGACTTTACGGTTCCG----CTTAA-----AGAC-- 1569
BSNT_01302___ 1578 ATGGAAGGCAG--------AGGTGCTGTTGACGAACGATGAAGCAAGGGA 1619
|.|||.|||.| .|||||||.|||||||.||||||.|.|||||
RBAM_007980__ 1570 ACGGACGGCTGGCGGTTTACGGTGCTGCTGACGAATGATGAACCGAGGGA 1619
BSNT_01302___ 1620 AGGGC-TTCAGAAC--ATGACGCTTCGCCCGTATGAGTCCATTGTTTATC 1666
||||| ..|.|||| .|||||||.||.||||||||.||.||.|||||||
RBAM_007980__ 1620 AGGGCGGCCGGAACGATTGACGCTCCGTCCGTATGAATCGATCGTTTATC 1669
BSNT_01302___ 1667 GTTTAATGAAACCGTGTTAA 1686
.|.|.|..|||.||||.
RBAM_007980__ 1670 ATCTGACAAAAGCGTGA--- 1686
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