Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01300 and RBAM_007970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_01300___treP.1.9828.seq
# -bsequence dna-align/RBAM_007970___treP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01300___treP-RBAM_007970___treP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01300___treP-RBAM_007970___treP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01300___treP
# 2: RBAM_007970___treP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1431
# Identity: 1099/1431 (76.8%)
# Similarity: 1099/1431 (76.8%)
# Gaps: 33/1431 ( 2.3%)
# Score: 4178.0
#
#
#=======================================
BSNT_01300___ 1 ATGGGGGAACTGAACAAATCG----GCACGTCAGATTGTCGAAGCAGTCG 46
|||||.||..|.||| || ||.||.|||||.|..|||||.||||
RBAM_007970__ 1 ATGGGTGAGTTTAAC----CGGGCTGCGCGGCAGATCGCTGAAGCTGTCG 46
BSNT_01300___ 47 GCGGTGCTGAAAATATTGCAGCGGCAACTCATTGTGTTACACGTTTGCGT 96
||||....||||||||||..|||||.|||||||||||.||.||||||||.
RBAM_007970__ 47 GCGGAATCGAAAATATTGAGGCGGCGACTCATTGTGTGACGCGTTTGCGG 96
BSNT_01300___ 97 TTTGCTTTAATAGATGAAAGCAAGGTTGACCAAGAGATGCTTGATCAAAT 146
|||||.|||||||||||||.|||.||..|||||.|.|||||||||..|||
RBAM_007970__ 97 TTTGCATTAATAGATGAAACCAAAGTAAACCAAAAAATGCTTGATGCAAT 146
BSNT_01300___ 147 TGATGCGGTAAAGGGATCATTCTCGACAAACGGACAGTTTCAGGTCGTAA 196
.||....||.||.|||||.||..||..||||||.||||||||.|||||.|
RBAM_007970__ 147 AGACATTGTCAAAGGATCTTTTGCGGTAAACGGGCAGTTTCAAGTCGTGA 196
BSNT_01300___ 197 TCGGCCAGGGAACTGTCAACAAAGTATATGCTGAACTGGTTAAGGAAACG 246
||||.|||||.||.|||||||||||||||||.|||.|.||.|||||||||
RBAM_007970__ 197 TCGGGCAGGGGACGGTCAACAAAGTATATGCGGAATTAGTGAAGGAAACG 246
BSNT_01300___ 247 GGGATTGGCGAGTCAACAAAGGATGAAGTGAAGAAGGCCTCAGAAAAAAA 296
|||||||||||..|..|.||||||||.|||||||||||..|.|...||||
RBAM_007970__ 247 GGGATTGGCGAAGCGTCCAAGGATGACGTGAAGAAGGCTGCGGCGCAAAA 296
BSNT_01300___ 297 TATGAATCCTTTGCAGCGTACTGTGAAAACGCTTGCAGACATTTTTATTC 346
.|||||||||||.||||||.||||||||||||||||.|||||.|||||||
RBAM_007970__ 297 AATGAATCCTTTACAGCGTGCTGTGAAAACGCTTGCGGACATCTTTATTC 346
BSNT_01300___ 347 CAATATTGCCTGCGATTGTCACGGCGGGTCTTTTAATGGGGATCAATAAC 396
|.||.|||||.|||||.||||||||.||.|||||||||||..|.||.|||
RBAM_007970__ 347 CGATCTTGCCGGCGATCGTCACGGCCGGGCTTTTAATGGGTCTGAACAAC 396
BSNT_01300___ 397 ATTTTAACGGCGGAAGGCATTTTCTTCAGCACAAAATCGATTGTGCAGGT 446
||.||||||||||||||||||||||.||||.|.|||||||||||.||.||
RBAM_007970__ 397 ATCTTAACGGCGGAAGGCATTTTCTACAGCGCCAAATCGATTGTCCAAGT 446
BSNT_01300___ 447 TTATCCGCAGTGGGCGGATCTTGCTAATATGATTAACCTGATTGCAGGCA 496
.||||||||.|||||||||||.||.|||||||||||.|||||.||.||.|
RBAM_007970__ 447 GTATCCGCAATGGGCGGATCTCGCCAATATGATTAATCTGATCGCGGGGA 496
BSNT_01300___ 497 CGGCCTTTACGTTTTTGCCTGCGTTAATCGGATGGTCTGCCGTCAAGCGG 546
||||.||..|.|||.||||.||.||||||||.|||||.||.||.||||||
RBAM_007970__ 497 CGGCTTTCGCTTTTCTGCCGGCTTTAATCGGCTGGTCAGCAGTGAAGCGG 546
BSNT_01300___ 547 TTCGGCGGCAATCCGCTTCTCGGCATTGTGCTCGGAGTTATGCTCGTGCA 596
|||||.||.|..|||||..|.||.||.||||||||..|.|||||.|||||
RBAM_007970__ 547 TTCGGAGGAAGCCCGCTCTTGGGTATCGTGCTCGGGCTGATGCTGGTGCA 596
BSNT_01300___ 597 TCCTGATTTGCTGAATGCGTGGGGATATGGCGCGGCAGAACAAAGCGGAG 646
|||||||.||.|.||.||.|||||.||.||.||.||.||.||.|||||.|
RBAM_007970__ 597 TCCTGATCTGTTAAACGCATGGGGCTACGGGGCCGCCGAGCAGAGCGGCG 646
BSNT_01300___ 647 AGATCCCGGTATGGAATCTATTCGGCCTAGAGGTGCAGAAAGTCGGCTAT 696
|.||.|||||.|||||.||.||||||||.|||||||||||||||||.|||
RBAM_007970__ 647 ATATTCCGGTGTGGAACCTGTTCGGCCTTGAGGTGCAGAAAGTCGGGTAT 696
BSNT_01300___ 697 CAGGGCCAGGTACTCCCAATTTTGCTTGCTTCTTATATGCTGGCGAAGAT 746
||.||.|||||.|||||.||||||||.||.||||||.|.||.||.|.|.|
RBAM_007970__ 697 CAAGGTCAGGTGCTCCCGATTTTGCTGGCGTCTTATTTACTTGCCAGGCT 746
BSNT_01300___ 747 TGAGGTATTTTTAACAAAACGCACACCTGAGGGCATACAGCTGCTCGTTG 796
||||.|.|||||.||.|||||.||.||.||||||||.||||||.|.||.|
RBAM_007970__ 747 TGAGCTCTTTTTGACGAAACGGACGCCGGAGGGCATTCAGCTGTTGGTCG 796
BSNT_01300___ 797 TCGCACCAATTACGCTTCTCTTAACAGGATTTGCCTCTTTTATCATTATC 846
||||.||..|.||||||.|..|.|..||.|||...||.|||.||||.|||
RBAM_007970__ 797 TCGCGCCGGTGACGCTTTTGGTCATCGGTTTTCTATCCTTTGTCATCATC 846
BSNT_01300___ 847 GGCCCGATTACATTTGCGATCGGTAATGTACTGACTTCAGGGCTT-ATCT 895
||.|||||.||.||||||||||||||.|..|||||..| |||.|| ||..
RBAM_007970__ 847 GGTCCGATCACCTTTGCGATCGGTAACGCGCTGACGGC-GGGATTGATTG 895
BSNT_01300___ 896 CGGTGTTTGG----TTCTTTTGCCGCACTGGGCGGTCTGTTATATGGCGG 941
|.||.||.|| |||| ||||..|.||.||||||.|.||.||.||
RBAM_007970__ 896 CCGTTTTCGGCCAATTCT----CCGCCATCGGAGGTCTGCTGTACGGAGG 941
BSNT_01300___ 942 TTTCTACTCAGCGCTCGTGATTACCGGTATGCATCACACGTTTCTTGCAG 991
..|.||.||.|||||.||.||.||.||.||||||||.||||||||.||.|
RBAM_007970__ 942 GCTGTATTCGGCGCTTGTAATCACGGGGATGCATCATACGTTTCTCGCGG 991
BSNT_01300___ 992 TCGACCTGCAGCTCATCGGTTCAAAGCTCGGCGGCACCTTTTTATGGCCG 1041
||||.||.||..|.|||||.|||||||||||||||||.||||||||||||
RBAM_007970__ 992 TCGATCTTCAATTAATCGGATCAAAGCTCGGCGGCACATTTTTATGGCCG 1041
BSNT_01300___ 1042 ATGCTGGCGCTTTCTAATATCGCACAAGGTTCGGCCGCTCTAGCCATGAT 1091
|||||.||..|.||.||||||||.|||||.|||||.|||.|.||||||||
RBAM_007970__ 1042 ATGCTCGCATTGTCAAATATCGCTCAAGGATCGGCGGCTTTGGCCATGAT 1091
BSNT_01300___ 1092 GTTTATCGTGAAGGATGAGAAACAAAAAGGCCTCTCCCTCACATCAGGGA 1141
|.|.||....||.|||.|.|||||....||.||.||.||.||..|.||.|
RBAM_007970__ 1092 GCTGATTACAAAAGATAAAAAACAGCGGGGGCTTTCACTGACGGCCGGCA 1141
BSNT_01300___ 1142 TTTCTGCTTATCTTGGCATTACAGAGCCTGCCATCTTTGGGGTGAATCTG 1191
||||.||.|||.|.||||||||.|||||.||.||.||.||.|||||||||
RBAM_007970__ 1142 TTTCCGCATATTTGGGCATTACCGAGCCGGCGATTTTCGGCGTGAATCTG 1191
BSNT_01300___ 1192 CGATACAGATTCCCGTTTATCATTGCAATGGTCAGCTCTGGCCTGGCCGG 1241
||.||||.|||.||||||.|.||.||.|||.|||||||.||..|.||.||
RBAM_007970__ 1192 CGTTACAAATTTCCGTTTGTGATCGCCATGATCAGCTCGGGAATCGCGGG 1241
BSNT_01300___ 1242 AATGTATATTTCTTCTC-----AAGGTGTGCTGGCAAGCTCCGTCGGTGT 1286
.||| |||.|||| ||||.||.||.||||||||.|||||.||
RBAM_007970__ 1242 GATG-----TTCATCTCCGTCAAAGGCGTTCTCGCAAGCTCGGTCGGAGT 1286
BSNT_01300___ 1287 CGGCGGCGTGCCGGGGATTTTCTCAATCATGAGCCAGTACTGGGGCGCGT 1336
||||||||||||||||||.|||||.||.|||||.|||||||||||..|||
RBAM_007970__ 1287 CGGCGGCGTGCCGGGGATCTTCTCCATTATGAGTCAGTACTGGGGTCCGT 1336
BSNT_01300___ 1337 TTGCAATCGGGATGGCT-ATTGTATTGATCGTGCCGTTTGCCGGAACATA 1385
||||.|||||.|| ||| ||.|||.||||..|.||||||||.||||||||
RBAM_007970__ 1337 TTGCGATCGGAAT-GCTGATCGTACTGATTCTCCCGTTTGCGGGAACATA 1385
BSNT_01300___ 1386 CGCGTATGCGAGATTCAAA---CATAAATAA 1413
||.|||||||||..|.||| ||.|||||.
RBAM_007970__ 1386 CGGGTATGCGAGGCTGAAACGGCAAAAATAG 1416
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