Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00962 and RBAM_007940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_00962___cotP.1.9828.seq
# -bsequence dna-align/RBAM_007940___cotP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00962___cotP-RBAM_007940___cotP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00962___cotP-RBAM_007940___cotP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00962___cotP
# 2: RBAM_007940___cotP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 465
# Identity: 298/465 (64.1%)
# Similarity: 298/465 (64.1%)
# Gaps: 66/465 (14.2%)
# Score: 929.5
#
#
#=======================================
BSNT_00962___ 1 ATGGATTTCGAAAAAATTCGAAAGTGGCTTGAGATTACGAATGAATATAA 50
.|||||.||||||||||..||||||||||||||||||||||.||..|.||
RBAM_007940__ 1 GTGGATATCGAAAAAATGAGAAAGTGGCTTGAGATTACGAACGAGCACAA 50
BSNT_00962___ 51 ACAAAGTGACTTTTGGACAAATGTGCTCAAATATAAAGCCCCAGAACATT 100
.|..||.|||||||||||.|||||.||.|||...|||.|.||.|||.|||
RBAM_007940__ 51 GCCCAGCGACTTTTGGACCAATGTCCTGAAACGGAAATCTCCCGAAGATT 100
BSNT_00962___ 101 TTTTTGATTCCGAAGCTTCT-----------ACGTTTGTTTACGACTTTT 139
|||| ||.|| ||..|...|||.||..|||
RBAM_007940__ 101 TTTT-----------CTCCTTACAAAAAAACACCCTGACTTATGATATTT 139
BSNT_00962___ 140 ATCAAGATGAAGAATATAATTTTATCATTGTGGAAATGCCCGGTGTGTAT 189
||||.||||||.|..|.|..||..|||||||||||||||||||.||.||.
RBAM_007940__ 140 ATCAGGATGAACAGCACACATTCGTCATTGTGGAAATGCCCGGCGTTTAC 189
BSNT_00962___ 190 GAGGAAGAATTAACGATCCGTTTACTATCTAAAACCCAGCTGTTGATCAA 239
||.||||||||.||..|..|..|.||.||.|.|||.|.||||...||||.
RBAM_007940__ 190 GAAGAAGAATTGACATTGAGGCTGCTGTCAAGAACACGGCTGCATATCAG 239
BSNT_00962___ 240 AGGGACGATCACGCCTGTTTTTCCTGCCGAA-----ATGGAAGTGATGCG 284
|||.|..|||||.||..||||||| || |||| |||
RBAM_007940__ 240 AGGAAACATCACACCCCTTTTTCC-----AAAGAACATGG-------GCG 277
BSNT_00962___ 285 T-------GAACGGTATTACGGAGAAAT---TGAG-CGAATCATTCAGCT 323
| .|.|||||||||||.||||| |||| || |||.||||
RBAM_007940__ 278 TCTGCCAAAACCGGTATTACGGGGAAATCGATGAGACG----ATTGAGCT 323
BSNT_00962___ 324 TCCCGAAGCCGCTGAATCTCATTTGTTACAGATTCAGCTG-TTAAACGGG 372
|||.|||.|.|||||..|.||..||||||||...||| || .|||||||.
RBAM_007940__ 324 TCCTGAACCGGCTGAGCCCCACCTGTTACAGGCGCAG-TGCGTAAACGGC 372
BSNT_00962___ 373 CTTCTGCACATTTCGTACCCAAGACAAATTGAAACCATTGCGTT-----C 417
||.||.||||||||.|||||..|.|..||.||...||||.|.|| .
RBAM_007940__ 373 CTGCTCCACATTTCCTACCCGCGCCTTATGGAGCACATTCCTTTTCAGAA 422
BSNT_00962___ 418 AATAAGGGGCTTTAA 432
||.|| |.|||
RBAM_007940__ 423 AAAAA-----TCTAA 432
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