Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01288 and RBAM_007880

See Amino acid alignment / Visit BSNT_01288 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_01288___yflH.1.9828.seq
#    -bsequence dna-align/RBAM_007880___yflH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01288___yflH-RBAM_007880___yflH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01288___yflH-RBAM_007880___yflH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01288___yflH
# 2: RBAM_007880___yflH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity:     231/325 (71.1%)
# Similarity:   231/325 (71.1%)
# Gaps:          23/325 ( 7.1%)
# Score: 774.0
# 
#
#=======================================

BSNT_01288___      1 ATGCACAGAGATCAAGAAAAAATCCAAATTGAAAACGAAATAAACGCGAT     50
                     |||.|.|.||||.|||||||||||.||||.||||||||||||.||||.||
RBAM_007880__      1 ATGAAAAAAGATAAAGAAAAAATCAAAATCGAAAACGAAATACACGCCAT     50

BSNT_01288___     51 GCATGGCACAATAAAAGAAGACATTTTAAAAGACTTTGAGGAATTTAAAG    100
                     |||.|||..||..|||.|..|.||||||.|.||.||.||||||||| |||
RBAM_007880__     51 GCACGGCGTAACGAAACAGCAGATTTTAGAGGATTTCGAGGAATTT-AAG     99

BSNT_01288___    101 GC-TACCT------GAAAAAACAAGTCAACCGAGGCAAAAAGCTGGGATT    143
                     || |||||      ||||    |..||..||  ||.|||||.|||||..|
RBAM_007880__    100 GCGTACCTTCATCAGAAA----ATTTCCGCC--GGAAAAAAACTGGGTCT    143

BSNT_01288___    144 GGATGACGGCAAGCTTGTGAAAAGCGCTGCGATTCTGGGAGACTACCTCG    193
                     |||||||.||||..|..|.||||||||.||.||.||.||.|||||.||||
RBAM_007880__    144 GGATGACAGCAAAATCATCAAAAGCGCCGCCATCCTCGGGGACTATCTCG    193

BSNT_01288___    194 CAAAGCATGAAGAG--CCGCAAAACGGTGAAGAAATGCTGCTGCAAGAGC    241
                     |.||.||.||.|||  ||||||..||  |||||||..||..|.|||||.|
RBAM_007880__    194 CCAAACACGAGGAGCCCCGCAATGCG--GAAGAAAAACTCTTACAAGAAC    241

BSNT_01288___    242 TTTGGAGCGTTGCGGACGAAGGTGAGAAAGAACATTTGGCACAGCTTCTG    291
                     |.|||..|.|||||||.||...|||.|||.|.||||||||.||||||||.
RBAM_007880__    242 TGTGGGACATTGCGGATGACAATGAAAAACAGCATTTGGCCCAGCTTCTC    291

BSNT_01288___    292 GTCAAA-TTGGTTGATAAACAATAA    315
                     |||||| |||...|    |||.|.|
RBAM_007880__    292 GTCAAACTTGCCGG----ACACTGA    312


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