Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01279 and RBAM_007820

See Amino acid alignment / Visit BSNT_01279 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:57
# Commandline: needle
#    -asequence dna-align/BSNT_01279___yflN.1.9828.seq
#    -bsequence dna-align/RBAM_007820___yflN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01279___yflN-RBAM_007820___yflN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01279___yflN-RBAM_007820___yflN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01279___yflN
# 2: RBAM_007820___yflN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 844
# Identity:     581/844 (68.8%)
# Similarity:   581/844 (68.8%)
# Gaps:          98/844 (11.6%)
# Score: 1921.5
# 
#
#=======================================

BSNT_01279___      1 ATGAGTGATCCTTATATGCCGCTGACTTCAGTCAGAAGCGGAACGGGGTT     50
                     |||||||||||.|.|||||||||...||||||.||||||||..|.||.||
RBAM_007820__      1 ATGAGTGATCCGTTTATGCCGCTTTTTTCAGTGAGAAGCGGGGCCGGTTT     50

BSNT_01279___     51 CGAAGCGGCAAAAGGGGTGCACGGCCTGACTGTGCAAATTGCGAATGTCT    100
                     ..|||||||..|.||.||..||||.|||||.|||||.|||||||||||.|
RBAM_007820__     51 TAAAGCGGCGGACGGCGTTTACGGACTGACCGTGCAGATTGCGAATGTTT    100

BSNT_01279___    101 ATTTTAT----------TCAGCTGCCTTCTGAACCTC----ACTCATT-T    135
                     |.|||||          ||||||          ||.|    |.||||| |
RBAM_007820__    101 ACTTTATCGAAAATCCCTCAGCT----------CCGCGGGAAATCATTCT    140

BSNT_01279___    136 GTTTTAATTGATGCCGGCATGCCTCAATCAGCCGGCATGATTGTCAA-TG    184
                     |     .||||.||.||.|||||||||||.||.|..|||||    || .|
RBAM_007820__    141 G-----GTTGACGCTGGAATGCCTCAATCGGCGGAGATGAT----AACAG    181

BSNT_01279___    185 AAGCCAAACAAA-----GATTCGGTGAAGGGTTTCAGCTGAAGGCGATTA    229
                     |||  |||..||     |.|||...||.||||.|||||||||||||.|.|
RBAM_007820__    182 AAG--AAATGAAACGCCGGTTCAAAGAGGGGTATCAGCTGAAGGCGGTCA    229

BSNT_01279___    230 TCCTCACACACGGGCACTTTGACCATATTGGGGCAATCGAAGAGATCCTT    279
                     |..|.||||||||.||.|||||.|||.|.||.||.||.||||||.|.|||
RBAM_007820__    230 TTTTGACACACGGTCATTTTGATCATGTCGGTGCGATTGAAGAGCTGCTT    279

BSNT_01279___    280 GAGCATTGGGATGTGCCTGTTTATGTCCATTCTCG----GGAAATGCCCT    325
                     |||..||||||||||||.|||||    |||||..|    |||..|.||.|
RBAM_007820__    280 GAGTTTTGGGATGTGCCGGTTTA----CATTCATGAAAAGGAGCTCCCGT    325

BSNT_01279___    326 ATGTAACAGGTAAAGAAGATTATCCTCCGGCTCGTCCTGA--CAGCAAGA    373
                     |.||.||.||.||||..||||||||.||.||..|.||.||  | |.||.|
RBAM_007820__    326 ACGTCACGGGGAAAGCGGATTATCCGCCTGCCAGGCCCGATGC-GAAAAA    374

BSNT_01279___    374 GCGGGCTGGTCGCCAAGCTGTCGCCGCTGTTTCCGCGGCACTCCAT-CGA    422
                     | |||||.|||||.||||||||.||||||||||||||     |||| |||
RBAM_007820__    375 G-GGGCTTGTCGCAAAGCTGTCACCGCTGTTTCCGCG-----CCATACGA    418

BSNT_01279___    423 T----ATTTCCTCACATGTCCAGGCACTGCCGGAAGACGGTTCAGTCCCT    468
                     |    |||.|.||   .||.||||||.||||...|||||||.|.||.||.
RBAM_007820__    419 TCCGCATTCCGTC---CGTTCAGGCATTGCCTTCAGACGGTACCGTTCCG    465

BSNT_01279___    469 TTTCTTGACGAGTGGATGTGGATTGC-GACACCAGGACACACGCCGGGCT    517
                     ||||||||.|||||||..||| .||| .||.||.||.|||||.||.|||.
RBAM_007820__    466 TTTCTTGAGGAGTGGAGATGG-GTGCATACGCCCGGTCACACACCCGGCC    514

BSNT_01279___    518 ATATTTCGTTATTCCGCGATGACGGCCGCGTGCTTGTGGCAGGTGATGCT    567
                     |||||||.||||||||.|||.|.|.||||||.||..|.||.||||||||.
RBAM_007820__    515 ATATTTCATTATTCCGGGATAAAGACCGCGTTCTGCTTGCCGGTGATGCC    564

BSNT_01279___    568 GTTATTACAGTGGAACAGGAGAAAATGGCT----GACGTCTTGATACAAA    613
                     ||.||.||.||.|||||||    |||.|||    |||||..|.||.||||
RBAM_007820__    565 GTGATCACTGTTGAACAGG----AATCGCTTGCGGACGTTGTCATTCAAA    610

BSNT_01279___    614 AACAGGAGCTTCACGGTCCGCCGGCTTATTTCACGCCTGACACAGAGACG    663
                     |.||.|||||||||||.|||||.||||||||.||..|.||.||..|||||
RBAM_007820__    611 AGCAAGAGCTTCACGGGCCGCCCGCTTATTTTACAGCGGATACGCAGACG    660

BSNT_01279___    664 GCCGCTGAGTCCATTCTGAAGCTGGCCGGTCTTGAACCGGAAGCGTTATT    713
                     ||.||.|..|||.|||.|||.|||||||..||.||.|||||||||.|.||
RBAM_007820__    661 GCGGCCGCATCCGTTCAGAAACTGGCCGAACTGGAGCCGGAAGCGCTTTT    710

BSNT_01279___    714 GACAGGGCACGGCATACCGATGACCGGCAAAAACTTTCGAAGTGA-----    758
                     |||.||.|||||.||.||||||||.||.|||||||..|   ||||     
RBAM_007820__    711 GACGGGTCACGGAATTCCGATGACGGGAAAAAACTACC---GTGAGGATT    757

BSNT_01279___    759 --CTTA-ACTGAATTGGCAAATCGG--TTATCGTCTATTTGA--    795
                       |||| ||||..|  |.|||.|.|  || .|||   ||||.  
RBAM_007820__    758 TGCTTACACTGGCT--GAAAAACTGCATT-CCGT---TTTGTAA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01279 and RBAM_007820

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
