Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01276 and RBAM_007800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:57
# Commandline: needle
# -asequence dna-align/BSNT_01276.1.9828.seq
# -bsequence dna-align/RBAM_007800___yflP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01276-RBAM_007800___yflP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01276-RBAM_007800___yflP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01276
# 2: RBAM_007800___yflP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1049
# Identity: 653/1049 (62.2%)
# Similarity: 653/1049 (62.2%)
# Gaps: 175/1049 (16.7%)
# Score: 2001.0
#
#
#=======================================
BSNT_01276 1 ATGAAAAAATCTATAATCCTATTGATTTTACTATTGATCTTTATGCAG-G 49
|||.|| |
RBAM_007800__ 1 ------------------------------------------ATGAAGCG 8
BSNT_01276 50 GT---GA--------TATCAGGCAGGCGGCTGC----------------- 71
|| || |.|||.||.|||||| ||
RBAM_007800__ 9 GTTGGGAGTGCTTCTTGTCATGCTGGCGGC-GCTGGTTTCTTTTGACGGA 57
BSNT_01276 72 --------GCCGCGCCTGCCG-------GACGGGCCGATAGAAATTGTTG 106
|.||.||.| ||| ||.||||||.|.||||||||.|
RBAM_007800__ 58 CGGCAGATGGCGGGCAT-CCGTTCAGCCGAAGGGCCGGTTGAAATTGTCG 106
BSNT_01276 107 TCCCTGCCGAACCTTCTGGCGGCTGGGATGTCACAGCGCAGGCGATCCAA 156
||||.||.|..|||...||.||||||||.||.||.||..|.||..|.|||
RBAM_007800__ 107 TCCCGGCGGCGCCTCAAGGGGGCTGGGACGTAACGGCAAAAGCTTTGCAA 156
BSNT_01276 157 TCAGTTTTGAG-GCAGAAGCAGAT------------CGTGAAGGGAGATG 193
||.|||.| || ||.||||||.|| |||.|||
RBAM_007800__ 157 TCGGTTAT-AGAGCGGAAGCAAATATTAGGCCGGCCCGTAAAG------- 198
BSNT_01276 194 TTCATATCGTCTATAAATCCGGCGGCGGGGGAGAGAAAGGCTGGAAATAT 243
||||||||||||.|||||||.||.|||||.|..||||||||||||
RBAM_007800__ 199 -----ATCGTCTATAAACCCGGCGGAGGCGGAGACAGCGGCTGGAAATAT 243
BSNT_01276 244 GTCAACAAAAGCAGCAAACAAAC------CATCAGCATGACGTCCAGCCT 287
||.|||.||.| |.|||| ||||||.||||..||.|||||
RBAM_007800__ 244 GTAAACGAACG------AAAAACGGATGTCATCAGTATGAATTCAAGCCT 287
BSNT_01276 288 AATATTGAGCAATGATCTTCTCGGGCAAAG-----TAAATTAAAAATGTC 332
..|.||.||||||||..||.|.||.||||| |.||...| .|
RBAM_007800__ 288 GCTGTTAAGCAATGAAATTTTGGGACAAAGCCGGCTGAAGGCA-----GC 332
BSNT_01276 333 CGATTTTACGCCGCTCGCCATTCTCTCCAAGGAATGGCAGACGGTTGCAT 382
.|||||||||||..|.||||||.||.|.||.||.||||||||.||.||..
RBAM_007800__ 333 TGATTTTACGCCTTTGGCCATTATCGCAAAAGAGTGGCAGACCGTCGCTC 382
BSNT_01276 383 TGCCAAAAGGA-TCAGCGTTAACAAATGGCAAGGATGTGCTGAATGAGAT 431
|.|| .||||| |||..|.|||.||..||.|||....||||....||.||
RBAM_007800__ 383 TTCC-GAAGGATTCAAAGATAAAAAGCGGAAAGCGGCTGCTCGGCGATAT 431
BSNT_01276 432 CAA--CATGCATCC---CGGCAAGGTGAGAATCGGCTTTGCCCCGGGGTT 476
.|| || ||||| ||||| |.|.||||||.|||||.||.||..|
RBAM_007800__ 432 TAAAGCA--CATCCGGGCGGCA---TAAAAATCGGATTTGCGCCCGGCCT 476
BSNT_01276 477 TGGCAATGATGATCAGCTCTCGTTCGTCAGAGCGGCAGATATGTACGGCA 526
.||.||||||||.||||||||.||.|..||||||||.||.|||..|||.|
RBAM_007800__ 477 CGGAAATGATGACCAGCTCTCCTTTGCGAGAGCGGCGGAAATGGCCGGAA 526
BSNT_01276 527 TTGACCCGTTTGACATTCAATTCTCACAGTATGACAGCAGCGAACAGCTC 576
||...||||||||.||.|..||.|..||.||.|..||||||.|..|..||
RBAM_007800__ 527 TTTCTCCGTTTGATATCCGCTTTTTTCAATACGGGAGCAGCAATGAAGTC 576
BSNT_01276 577 ATTCAGGCGCTGATCAGACATGAGATAGAAGCGGCTTCCATGACACTTTC 626
|||.|.||.||.|||||.||.||||||||.||.||.||.|||||..||||
RBAM_007800__ 577 ATTGAAGCTCTTATCAGCCACGAGATAGACGCCGCCTCAATGACCATTTC 626
BSNT_01276 627 TGAAGCGAAA----CCATATGAACGAAACGGCGATATCACGTTAGCCGCT 672
.|||||||.| || ||| ||.||.||..|.|||||.||.||.||.
RBAM_007800__ 627 AGAAGCGAGAGACGCC-TAT---CGGAAAGGGAAAATCACATTGGCGGCC 672
BSNT_01276 673 GTAACGTCTGATAAAAGACTTCCCGGTTTTCCA--AATGTACCGACGTGG 720
||.|||||.||.|||||.||..||||.|| || .||||.|||||.|||
RBAM_007800__ 673 GTTACGTCGGACAAAAGGCTCTCCGGCTT--CAGCGATGTGCCGACATGG 720
BSNT_01276 721 AAGGAGCAGGGAATCCCGTTTGTTTTTTCTCATTGGAGAGGGATTTTGGG 770
||.||||||||..|.||||||||.|||.|.||.||||||||.||..||||
RBAM_007800__ 721 AAAGAGCAGGGGGTGCCGTTTGTCTTTGCGCACTGGAGAGGCATCATGGG 770
BSNT_01276 771 CCCGAAAAATATGTCTGAGGAAGAGATTTCTTACTGGGATCAAGCGCTAA 820
.||||||.|.|||.|.||.|..|||||..|.||.||||||||.||..|.|
RBAM_007800__ 771 GCCGAAAGACATGACCGAAGGCGAGATCGCCTATTGGGATCAGGCTTTGA 820
BSNT_01276 821 AGAAGGTCACCTCCTCACCTGAATGGAAGCGGAAAAT-----AAACGAAC 865
|..||.|.|||||.||..|.||.||||||| |||| ||| |||
RBAM_007800__ 821 AACAGATTACCTCATCCGCGGAGTGGAAGC---AAATGTTGAAAA--AAC 865
BSNT_01276 866 AGGACTGGGAAAGCTTTTATTTGAACAGCAGGGAAACGAAACGGTTTTTA 915
.|||.|||||.|||||||||...||||||||.|...|.|||||.||||||
RBAM_007800__ 866 GGGATTGGGAGAGCTTTTATAAAAACAGCAGCGGCGCAAAACGCTTTTTA 915
BSNT_01276 916 GAAGAGCAATCTGCTTTTTATCAAAG-CATCATGA-CA--GGAAATTAA 960
||||||||..|.|..|||||| |||| .||.|||| || |.|||.|||
RBAM_007800__ 916 GAAGAGCAGACCGAGTTTTAT-AAAGAGATGATGAGCAGCGAAAAATAA 963
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