Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01264 and RBAM_007660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_01264___yfmM.1.9828.seq
# -bsequence dna-align/RBAM_007660___yfmM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01264___yfmM-RBAM_007660___yfmM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01264___yfmM-RBAM_007660___yfmM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01264___yfmM
# 2: RBAM_007660___yfmM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1560
# Identity: 1328/1560 (85.1%)
# Similarity: 1328/1560 (85.1%)
# Gaps: 6/1560 ( 0.4%)
# Score: 5695.0
#
#
#=======================================
BSNT_01264___ 1 ATGAGTATTTTATCTGTAAAGGATTTAAGCCACGGCTTCGGGGACCGGGC 50
||||||||||||||.|||||.|||||||||||||||||.||.|||||.||
RBAM_007660__ 1 ATGAGTATTTTATCCGTAAAAGATTTAAGCCACGGCTTTGGTGACCGTGC 50
BSNT_01264___ 51 CATTTTTAATAACGTTTCCTTCCGCCTGTTAAAAGGCGAGCACGTCGGCT 100
..|||||||.||.||.||.|||||.||.||||||||.||.||||||||||
RBAM_007660__ 51 GCTTTTTAACAATGTATCGTTCCGTCTTTTAAAAGGGGAACACGTCGGCT 100
BSNT_01264___ 101 TGATCGGCGCAAACGGTGAAGGAAAATCAACCTTCATGAATATTATTACC 150
|.|||||.||||||||.|||||.||||||||.||.|||||||||||||||
RBAM_007660__ 101 TAATCGGAGCAAACGGCGAAGGTAAATCAACGTTTATGAATATTATTACC 150
BSNT_01264___ 151 GGAAAGCTTGAACCTGATGAGGGAAAAGTCGAATGGTCAAAAAATGTCCG 200
|||||||||||.|||||||||||.||.||.||||||.|.|||||.||.||
RBAM_007660__ 151 GGAAAGCTTGAGCCTGATGAGGGTAAGGTTGAATGGGCGAAAAACGTGCG 200
BSNT_01264___ 201 TGTCGGCTATCTGGATCAGCATACCGTGCTGGAAAAAGGAAAATCTATTC 250
.||||||||.||.|||||||||||||||||.||||||||||||.|.||.|
RBAM_007660__ 201 CGTCGGCTACCTCGATCAGCATACCGTGCTTGAAAAAGGAAAAACGATCC 250
BSNT_01264___ 251 GCGACGTCCTGAAAGACGCGTTCCATTATCTATTTGCGATGGAAGAGGAA 300
|||||||.||||||||.|||||||||||..||||||||||||||||||||
RBAM_007660__ 251 GCGACGTGCTGAAAGATGCGTTCCATTACTTATTTGCGATGGAAGAGGAA 300
BSNT_01264___ 301 ATGAACGAGATTTACAACAAAATGGGTGAAGCAGATCCCGACGAGCTCGA 350
|||||.||||||||||||||||||||.|||||.||.||.||.|||||.||
RBAM_007660__ 301 ATGAATGAGATTTACAACAAAATGGGCGAAGCGGACCCTGATGAGCTTGA 350
BSNT_01264___ 351 AAAGCTGCTTGAAGAAGTCGGCGTCATTCAAGACGCGCTGACAAACAATG 400
..|||||||||||||.|||||.||||||||||||||.|||||||||||||
RBAM_007660__ 351 GCAGCTGCTTGAAGATGTCGGTGTCATTCAAGACGCCCTGACAAACAATG 400
BSNT_01264___ 401 ATTTTTATGTCATTGATTCCAAGGTGGAAGAAATCGCCCGCGGTCTCGGT 450
|.||.||.||.|||||...|||.||.|||||||||||||||||.|||||.
RBAM_007660__ 401 ACTTCTACGTGATTGACAGCAAAGTTGAAGAAATCGCCCGCGGCCTCGGC 450
BSNT_01264___ 451 TTG-AGCGATATCGGATTAGAGCGAGATGTCACCGATTTGAGCGGCGGAC 499
.|| || |||.|||||.|.||.||.||.|||||.|||||.||||||||||
RBAM_007660__ 451 CTGCAG-GATGTCGGACTTGACCGCGACGTCACAGATTTAAGCGGCGGAC 499
BSNT_01264___ 500 AGCGCACAAAGGTCCTTCTCGCTAAGCTGCTCCTTGAAAAGCCGGAAATT 549
||||.||.||.||.||.|||||.||.|||||..|.|||||.||||||||.
RBAM_007660__ 500 AGCGGACGAAAGTGCTGCTCGCCAAACTGCTTTTGGAAAAACCGGAAATC 549
BSNT_01264___ 550 CTGCTTCTCGATGAGCCGACCAACTATCTTGATGAACAGCATATTGAATG 599
||.||..|.||.||.|||||||||||.|||||||||||||||||||||||
RBAM_007660__ 550 CTTCTGTTGGACGAACCGACCAACTACCTTGATGAACAGCATATTGAATG 599
BSNT_01264___ 600 GCTGAAACGCTACCTGCAGGAATACGAGAACGCGTTCATCCTGATTTCCC 649
||||||||||||..||||||||||.||.||.|||||||||.|.|||||.|
RBAM_007660__ 600 GCTGAAACGCTATTTGCAGGAATATGAAAATGCGTTCATCTTAATTTCTC 649
BSNT_01264___ 650 ACGATATTCCGTTCTTGAATAGTGTCATCAACCTGATTTATCACGTTGAA 699
||||.||||||||.||.||.||.||.|||||..||||||||||.||.|||
RBAM_007660__ 650 ACGACATTCCGTTTTTAAACAGCGTGATCAATTTGATTTATCATGTGGAA 699
BSNT_01264___ 700 AATCAAGAGCTGACACGCTATGTCGGCGACTACCATCAGTTTATGGAAGT 749
|||||.||||||||.||.||||||||||||||||||||||||||||||||
RBAM_007660__ 700 AATCAGGAGCTGACGCGTTATGTCGGCGACTACCATCAGTTTATGGAAGT 749
BSNT_01264___ 750 CTACGAGGTGAAGAAACAGCAGCTTGAAGCGGCCTATAAAAAGCAGCAGC 799
.|||||.|||||.|||||||||||.|||||.|||||||||||.|||||||
RBAM_007660__ 750 ATACGAAGTGAAAAAACAGCAGCTCGAAGCCGCCTATAAAAAACAGCAGC 799
BSNT_01264___ 800 AGGAAGTCGCAGAGCTGAAGGATTTCGTCGCCCGCAACAAAGCGCGCGTC 849
|||||||.||.||||||||.||||||||||||||||||||||||||||||
RBAM_007660__ 800 AGGAAGTGGCTGAGCTGAAAGATTTCGTCGCCCGCAACAAAGCGCGCGTC 849
BSNT_01264___ 850 AGCACGAGAAACATGGCGATGTCCCGCCAAAAGAAACTCGATAAGATGGA 899
|||||||||||.|||||||||||||||||.||.||.||.|||||||||||
RBAM_007660__ 850 AGCACGAGAAATATGGCGATGTCCCGCCAGAAAAAGCTTGATAAGATGGA 899
BSNT_01264___ 900 TATGATCGAGCTTGCGGCAGAAAAGCCAAAGCCGGAATTCCACTTTAAGC 949
|||||||||.||.|||||.|||||.||.||.|||||||||||.||.||||
RBAM_007660__ 900 TATGATCGAACTGGCGGCCGAAAAACCGAAACCGGAATTCCATTTCAAGC 949
BSNT_01264___ 950 CGGCGAGAACGTCAGGCAAGCTGATTTTTGAAACAAAGGATCTCGTGATC 999
|.||||||||||||||||||||.|||||||||||.|||||..|.||.|||
RBAM_007660__ 950 CTGCGAGAACGTCAGGCAAGCTCATTTTTGAAACGAAGGACTTAGTCATC 999
BSNT_01264___ 1000 GGTTACGATTCCCCGCTGTCCCGTCCGCTCAACCTCCGCATGGAGCGCGG 1049
||.||||||.|.||||||||.||.||||||||.|||.|.|||||||||||
RBAM_007660__ 1000 GGCTACGATACTCCGCTGTCACGCCCGCTCAATCTCAGAATGGAGCGCGG 1049
BSNT_01264___ 1050 CCAAAAAATCGCCCTTTACGGCGCAAACGGGATCGGAAAAACGACGTTGC 1099
.||.|||.|||||||.||||||||||||||.|||||.||.||||||.||.
RBAM_007660__ 1050 ACAGAAAGTCGCCCTGTACGGCGCAAACGGCATCGGGAAGACGACGCTGT 1099
BSNT_01264___ 1100 TGAAAAGTTTGCTTGGTGAAATCCAGCCGCTCGAAGGCTCTGTAGAACGC 1149
|.|||||..||||.|||||||||||||||||.||||||.|.||.|||||.
RBAM_007660__ 1100 TAAAAAGCCTGCTCGGTGAAATCCAGCCGCTGGAAGGCACGGTGGAACGG 1149
BSNT_01264___ 1150 GGTGAGCACATC--TATACCGGCTATTTCGAGCAAGAGGTCAAGGAAACA 1197
||.||| |||| ||.||.||||||||||||||.||.||.||.|||||.
RBAM_007660__ 1150 GGCGAG--CATCAATACACGGGCTATTTCGAGCAGGAAGTGAAAGAAACC 1197
BSNT_01264___ 1198 AACAACAATACGTGCATCGAAGAAGTATGGAGCGAATTCCCTTCTTATAC 1247
||.|||||||||||||||||||||||.|||||||||||.|||||.|.|||
RBAM_007660__ 1198 AATAACAATACGTGCATCGAAGAAGTGTGGAGCGAATTTCCTTCCTTTAC 1247
BSNT_01264___ 1248 GCAGTATGAAATCCGTGCCGCTTTGGCAAAATGCGGACTGACGACAAAGC 1297
.|||||.||||||||.|||||..|.||.||||||||.||||||||.||.|
RBAM_007660__ 1248 CCAGTACGAAATCCGCGCCGCCCTCGCCAAATGCGGCCTGACGACCAAAC 1297
BSNT_01264___ 1298 ATATCGAAAGCCGCGTCGCCGTATTAAGCGGAGGCGAAAAAGCGAAAGTC 1347
|.||.||||||||||||.||||..|.||||||||.|||||||||||.|||
RBAM_007660__ 1298 ACATTGAAAGCCGCGTCTCCGTTCTCAGCGGAGGAGAAAAAGCGAAGGTC 1347
BSNT_01264___ 1348 AGATTGTGCAAGCTAATCAACTCAGAAACAAACCTGCTGGTGCTCGATGA 1397
|||.||||||||||.|||||.|||||||||||||||||.|||||.||.||
RBAM_007660__ 1348 AGACTGTGCAAGCTGATCAATTCAGAAACAAACCTGCTCGTGCTTGACGA 1397
BSNT_01264___ 1398 GCCGACAAACCACTTGGATGTCGATGCCAAGGAAGAGCTCAAGCGCGCCC 1447
.||||||||||||.|||||||||||||.||.||||||||.||.||.||.|
RBAM_007660__ 1398 ACCGACAAACCACCTGGATGTCGATGCGAAAGAAGAGCTGAAACGTGCGC 1447
BSNT_01264___ 1448 TGAAAGAATATAAAGGCTCCATTCTGCTCATTTCCCACGAGCCAGACTTT 1497
||||||||||.||||||||.||||||||.|||||||||||.||.||.||.
RBAM_007660__ 1448 TGAAAGAATACAAAGGCTCTATTCTGCTGATTTCCCACGAACCCGAGTTC 1497
BSNT_01264___ 1498 TATATGGATATCGCGACAGAAACGTGGAACTGCGAGTCTTGGACGACGAA 1547
||.||||||||||||||.|||||.|||||.||.||.||||||||||||||
RBAM_007660__ 1498 TACATGGATATCGCGACGGAAACATGGAATTGTGAATCTTGGACGACGAA 1547
BSNT_01264___ 1548 AGTGCTTTAA 1557
||||||.|||
RBAM_007660__ 1548 AGTGCTGTAA 1557
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