Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01256 and RBAM_007630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_01256___yfmR.1.9828.seq
# -bsequence dna-align/RBAM_007630___yfmR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01256___yfmR-RBAM_007630___yfmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01256___yfmR-RBAM_007630___yfmR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01256___yfmR
# 2: RBAM_007630___yfmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1901
# Identity: 1515/1901 (79.7%)
# Similarity: 1515/1901 (79.7%)
# Gaps: 22/1901 ( 1.2%)
# Score: 6022.5
#
#
#=======================================
BSNT_01256___ 1 ATGAGCATATTAAAAGCGGAAAATCTTTATAAAACATACGGAGATAAAAC 50
||||||||..|||||||||||||.|||||||||||||||||||||||.||
RBAM_007630__ 1 ATGAGCATCATAAAAGCGGAAAACCTTTATAAAACATACGGAGATAAGAC 50
BSNT_01256___ 51 ATTATTTGACCATATCTCCTTTCATATTGAAGAGAATGAGAGAATCGGAT 100
||||||.||||||||||||||||||||||||||||||||.||||||||.|
RBAM_007630__ 51 ATTATTCGACCATATCTCCTTTCATATTGAAGAGAATGAAAGAATCGGTT 100
BSNT_01256___ 101 TAATCGGGCCGAACGGAACTGGAAAATCAACGCTGCTGAAAGTGATTGCC 150
|||||||.|||||||||||.||.||.||.|||||.||||||...||||||
RBAM_007630__ 101 TAATCGGCCCGAACGGAACGGGGAAGTCTACGCTTCTGAAAACCATTGCC 150
BSNT_01256___ 151 GGCTTGGAATCTATCGAAGAAGGAGAAATCACGAAATCCGGAAGCGTGCA 200
|||.|.|||||.|..||.|||||.||.||.|||...||.||||.||||||
RBAM_007630__ 151 GGCCTTGAATCAACGGAGGAAGGCGAGATTACGGCTTCAGGAAACGTGCA 200
BSNT_01256___ 201 GGTCGAATTTCTTCATCAAGACCCGGAGCTGCCTGCGGGGCAAACAGTGC 250
..|.||.|||.|.|||||.|||||.||.||.||.||.||.|||||.||.|
RBAM_007630__ 201 TATTGAGTTTTTGCATCAGGACCCTGATCTTCCGGCCGGACAAACCGTAC 250
BSNT_01256___ 251 TGGAGCATATCTATTCCGGTGAATCGGCTGTGATGAAAACCTTGCGTGAA 300
|.||||||||.||||||||.|.|||.||.||.||||.|||..||.|.|||
RBAM_007630__ 251 TTGAGCATATTTATTCCGGCGGATCAGCCGTCATGAGAACGATGAGAGAA 300
BSNT_01256___ 301 TATGAAAAAGCGCTGTA-----TGAACTGGGGAAAGATCCCGAAAATGAA 345
||.|||||||||||..| |||| || ||||.||.||||||||.
RBAM_007630__ 301 TACGAAAAAGCGCTTCAGGCGCTGAA-TG----AAGAACCGGAAAATGAC 345
BSNT_01256___ 346 CAGCGCCAGAAACACCTGCTGGCAGCACAAGCGAAAATGGACGCAAACAA 395
||||||||||||||.|||||.|..||.||.||...|||||||||.||..|
RBAM_007630__ 346 CAGCGCCAGAAACAGCTGCTTGATGCGCAGGCCCGAATGGACGCGAATGA 395
BSNT_01256___ 396 TGCATGGGATGCAAACACCTTGGCAAAAACCGTATTGTCTAAGCTGGGCG 445
|||.|||||.||.||.||.||.||.|||||.||.||..|.||.||.||||
RBAM_007630__ 396 TGCGTGGGAGGCGAATACGTTAGCCAAAACGGTTTTAACCAAACTTGGCG 445
BSNT_01256___ 446 TCAACGACGTAACAAAACCGGTCAATGAGCTCTCAGGCGGCCAGAAAAAA 495
|||.|||..|.|..||....||||.||||||.||.||||||||||.|||.
RBAM_007630__ 446 TCACCGATCTGATGAAGGATGTCAGTGAGCTGTCCGGCGGCCAGAGAAAG 495
BSNT_01256___ 496 CGGGTGGCCATTGCCAAAAACTTAATTCAGCCTGCTGATCTGCTCATTTT 545
||.||.||.|||||.||||||.|.||.|||||.||.||.||||||||.||
RBAM_007630__ 496 CGCGTCGCGATTGCGAAAAACGTCATCCAGCCGGCAGACCTGCTCATATT 545
BSNT_01256___ 546 GGACGAGCCGACAAACCATTTGGATAATGAAACGATTGAGTGGCTTGAAG 595
|||.||.|||||||||||.|||||.||||||||||||||.|||||.||||
RBAM_007630__ 546 GGATGAACCGACAAACCACTTGGACAATGAAACGATTGAATGGCTGGAAG 595
BSNT_01256___ 596 GGTATTTAAGCCAATATCCCGGCGCCGTCATGCTGGTGACGCACGATAGA 645
|.||.|||...||||||||.||||||||.|||||.||.||||||||.|||
RBAM_007630__ 596 GCTACTTATCGCAATATCCGGGCGCCGTTATGCTTGTCACGCACGACAGA 645
BSNT_01256___ 646 TATTTCTTAAACCGTGTCACCAACCGCATTTATGAGCTTGAAAGAGGCAG 695
|||||..|.|||.|.||.||.|||.|.|||||.||||||||.||||||||
RBAM_007630__ 646 TATTTTCTGAACAGGGTGACGAACAGAATTTACGAGCTTGAGAGAGGCAG 695
BSNT_01256___ 696 CCTCTACACGTACAAAGGCAACTATGAAGTGTTTTTAGAAAAACGTGCGG 745
|||.||.|||||.|||||.|||||||||||.||.||.||||||||.||.|
RBAM_007630__ 696 CCTTTATACGTATAAAGGAAACTATGAAGTATTCTTGGAAAAACGGGCCG 745
BSNT_01256___ 746 AACGGGAAGCGCAGGCTGAGCAAAAGGAGACGAAGCGGCAAAACCTGCTG 795
||||||||||||.|||.|||||.||.||.||.||.||.||||||||.|||
RBAM_007630__ 746 AACGGGAAGCGCTGGCGGAGCAGAAAGAAACAAAACGTCAAAACCTCCTG 795
BSNT_01256___ 796 CGCCGCGAGCTGGCCTGGCTCAGACGAGGAGCGAAAGCCCGCTCAACAAA 845
||||||||..||||.|||||||||.||||.||||||||.|||||.||.||
RBAM_007630__ 796 CGCCGCGAATTGGCGTGGCTCAGAAGAGGGGCGAAAGCGCGCTCGACGAA 845
BSNT_01256___ 846 ACAAAAGGCGAGAATTGACCGGGTAGAGACGCTTAAAGAGCAGAAA-GGC 894
||||||.||||||.|.|||.|.|..|||.||||.||||||||.||| |||
RBAM_007630__ 846 ACAAAAAGCGAGAGTGGACAGAGCGGAGGCGCTCAAAGAGCAAAAAGGGC 895
BSNT_01256___ 895 CCTCAGTCATCAGGTTCACTCGATTTTGCCATTGGCTCGCACCGTCTCGG 944
|..||||| ||.||.|||||||||||.||.||.|||||.|||||||||||
RBAM_007630__ 896 CGGCAGTC-TCCGGATCACTCGATTTCGCGATCGGCTCCCACCGTCTCGG 944
BSNT_01256___ 945 AAAACAGGTTATTGAAGCGGAGAACGTCATGATCGCTTATGACGGCC--G 992
|||||||||.||.|||||.||.||||||...||..|.|||.|||||| |
RBAM_007630__ 945 AAAACAGGTGATCGAAGCCGATAACGTCGCCATTACCTATAACGGCCAAG 994
BSNT_01256___ 993 CATGCTCGTCGACCGTTTTAATGAACTTGTCATACCAGGTGAACGGATCG 1042
| |||..||..||..||||||||.||||||||.||.||.|||.|.||||
RBAM_007630__ 995 C--GCTGATCAGCCAGTTTAATGAGCTTGTCATCCCGGGGGAAAGAATCG 1042
BSNT_01256___ 1043 GGATCATCGGGCCGAACGGCATCGGGAAAACAACGCTGTTAAATGCCCTT 1092
|.|||||||||||||||||.|||||||||||.||.||.|||||...|||.
RBAM_007630__ 1043 GCATCATCGGGCCGAACGGAATCGGGAAAACGACACTTTTAAACAGCCTC 1092
BSNT_01256___ 1093 GCCGGCCG---TCATACGCCGGACGGAGGCGATATTACGATCGGACAGAC 1139
||||||.| ||| |||.|||.|.|||.||||.||.|||||.|||||
RBAM_007630__ 1093 GCCGGCAGAATTCA---GCCTGACAGCGGCAATATCACCATCGGGCAGAC 1139
BSNT_01256___ 1140 GGTCAGAATCGGCTACTATACTCAGGATCATAGTGAAATGAACGGTGAGT 1189
||||.|.|||||||||||.||.|||||.||.||.|||||||||||.||..
RBAM_007630__ 1140 GGTCCGGATCGGCTACTACACCCAGGACCACAGCGAAATGAACGGCGATA 1189
BSNT_01256___ 1190 TAAAGGTCATTGACTATATAAAAGAAACGGCGGAGGTCGTAAAAACGGCA 1239
|.||.||||||||.|||||||||||.|||||.||..||||.||||||||.
RBAM_007630__ 1190 TGAAAGTCATTGAATATATAAAAGAGACGGCTGAAATCGTCAAAACGGCG 1239
BSNT_01256___ 1240 GATGGCGATATGATTACAGCTGAACAAATGCTCGAGCGTTTCCTCTTCCC 1289
||.||||||.|.||.||.||.|||||||||||.||||||||.||.|||||
RBAM_007630__ 1240 GAAGGCGATGTCATCACCGCGGAACAAATGCTTGAGCGTTTTCTGTTCCC 1289
BSNT_01256___ 1290 GCGTTCAATGCAGCAGACGTATATCCGCAAGCTGTCCGGCGGGGAAAAAC 1339
||||.|.|||||||||||.||||||.|.||||||||.|||||||||||.|
RBAM_007630__ 1290 GCGTCCGATGCAGCAGACATATATCAGAAAGCTGTCGGGCGGGGAAAAGC 1339
BSNT_01256___ 1340 GCCGTTTATACTTGCTTCAGGTTCTCATGCAGGAGCCGAATGTCCTGTTT 1389
|||||.|.||||||||..|.||.||.|||||||||||||||||.||||||
RBAM_007630__ 1340 GCCGTCTGTACTTGCTGAATGTACTGATGCAGGAGCCGAATGTGCTGTTT 1389
BSNT_01256___ 1390 CTCGATGAGCCGACGAACGATTTGGATACTGAAACATTAAGCGTTCTTGA 1439
.|.|||||||||||.||.|||.||||.||.||||||||||||||.||.||
RBAM_007630__ 1390 TTAGATGAGCCGACCAATGATCTGGACACAGAAACATTAAGCGTGCTCGA 1439
BSNT_01256___ 1440 GGATTATATTGACCAATTCCCTGGCGTCGTCATCACCGTATCCCATGACC 1489
|||||||||.||.||.|||||.||||||||||||||||||||||||||||
RBAM_007630__ 1440 GGATTATATCGAACAGTTCCCAGGCGTCGTCATCACCGTATCCCATGACC 1489
BSNT_01256___ 1490 GCTATTTCCTTGACCGCGTCGTCGACCGTTTGATTGTATTTGAAGGAAAT 1539
||||||||||||||||||||.|.|||||..||||.||||||||||||.|.
RBAM_007630__ 1490 GCTATTTCCTTGACCGCGTCATTGACCGACTGATCGTATTTGAAGGACAA 1539
BSNT_01256___ 1540 GGCGTCATTTCCCGCTTTCAAGGCTCCTATAGCGACTATATGGAGGAGTC 1589
||.|||||||||||.||.|||||.||.||.||.||.||.|||||..|..|
RBAM_007630__ 1540 GGTGTCATTTCCCGTTTCCAAGGTTCGTACAGTGAATACATGGAACACGC 1589
BSNT_01256___ 1590 AAAAGCGAAAAAAGCGGCCCAAAAACCGACAGCTGAGGAAAAAACGGCTG 1639
|||||||||.||..||||...|||||.|.|.||.||.||.||||.|.|.|
RBAM_007630__ 1590 AAAAGCGAAGAAGACGGCGGTAAAACAGCCGGCCGAAGAGAAAAAGACGG 1639
BSNT_01256___ 1640 AAGCCGAGCCGAAGAAAAAACGGAAAAAGCTTTCTTACAAAGACCAGCTG 1689
|.|..||||||||||||||.||.|||||||||||.||.||.||.|||.|.
RBAM_007630__ 1640 AGGAAGAGCCGAAGAAAAAGCGCAAAAAGCTTTCATATAAGGATCAGATC 1689
BSNT_01256___ 1690 GAATGGGACGGCATCGAAGATAAAATTGCCCAGCTGGAAGAAAAGCATGA 1739
||||||||||||||||||||.|||||.|||...||.||||||||||||.|
RBAM_007630__ 1690 GAATGGGACGGCATCGAAGACAAAATCGCCGGCCTTGAAGAAAAGCATCA 1739
BSNT_01256___ 1740 GCAGCTCGAAGCTGACATCGCCGCAGCAGGCAGTGATTTTGGCAAAATCC 1789
||..||.|||||.||.|||||.|.|||.||.||||||||.||.||.||.|
RBAM_007630__ 1740 GCGTCTGGAAGCGGAAATCGCTGAAGCGGGAAGTGATTTCGGAAAGATTC 1789
BSNT_01256___ 1790 AAGAGCTGATGGCCGAGCAGGCGAAAACTGCGGAAGAGCTTGAGGCTGCG 1839
||||.|||||||||||.|||||.|||||.||.|||||||||||.||.|||
RBAM_007630__ 1790 AAGAACTGATGGCCGAACAGGCAAAAACGGCTGAAGAGCTTGAAGCGGCG 1839
BSNT_01256___ 1840 ATGGACCGCTGGACAGAATTGTCCCTCATGATCGAAGAACTGGAAAGCTA 1889
|||||.||||||||.||||||||.||.|||||.||||||||.||.|..||
RBAM_007630__ 1840 ATGGAGCGCTGGACCGAATTGTCACTGATGATTGAAGAACTTGAGAATTA 1889
BSNT_01256___ 1890 A 1890
|
RBAM_007630__ 1890 A 1890
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