Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01769 and RBAM_007610

See Amino acid alignment / Visit BSNT_01769 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_01769___yhxD.1.9828.seq
#    -bsequence dna-align/RBAM_007610___yhxD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01769___yhxD-RBAM_007610___yhxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01769___yhxD-RBAM_007610___yhxD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01769___yhxD
# 2: RBAM_007610___yhxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 919
# Identity:     694/919 (75.5%)
# Similarity:   694/919 (75.5%)
# Gaps:          38/919 ( 4.1%)
# Score: 2580.0
# 
#
#=======================================

BSNT_01769___      1 ATGTCTGATTCAAAT------------CTTACGAATCCTATAAAAGCATT     38
                     |||||||||.|||||            ||.|||||            ||.
RBAM_007610__      1 ATGTCTGATGCAAATCTGCACAACCCGCTGACGAA------------ATA     38

BSNT_01769___     39 TTTTCATGATGAATTTCCCGAACAATATCAAGAACCGCCAGGCCTGCA-A     87
                     |..|||||||||||||||..|||||||||||||||||||.||..|||| |
RBAM_007610__     39 TGATCATGATGAATTTCCAAAACAATATCAAGAACCGCCCGGTTTGCAGA     88

BSNT_01769___     88 AAGAACATGAAGCCTGTCCCTGATTGCGGAGAAAAAAGCTACAAAAGATC    137
                     ||| |.|||||||||||.||.||||||||.||||.||||||.|||.||.|
RBAM_007610__     89 AAG-AGATGAAGCCTGTGCCGGATTGCGGTGAAACAAGCTATAAAGGAGC    137

BSNT_01769___    138 AGGTAAACTAACGGGTCGAAAAGCGCTTGTCACGGGCGGCGATTCCGGTA    187
                     .||.||.||.|.|||..|||||||.||.|||||.|||||||||||.||||
RBAM_007610__    138 CGGCAAGCTGAAGGGAAGAAAAGCCCTCGTCACCGGCGGCGATTCAGGTA    187

BSNT_01769___    188 TCGGCCGCGCTGCCGCAATTGCTTACGCCAGAGAAGGTGCCGATGTGGCC    237
                     |||||||.||.|||||.||||||||.|||.|.|||||.||.||||||||.
RBAM_007610__    188 TCGGCCGGGCCGCCGCGATTGCTTATGCCCGGGAAGGGGCGGATGTGGCG    237

BSNT_01769___    238 ATTAACTACTTGCCCGAGGAACAGCCAGATGCTGAAGAGGTAAAAGAACT    287
                     ||||||||..||||.|||||||||||.|||||||||||.||.||||...|
RBAM_007610__    238 ATTAACTATCTGCCTGAGGAACAGCCGGATGCTGAAGAAGTGAAAGCGTT    287

BSNT_01769___    288 GATCGAAGCAGAAGGTCGAAAAGCAGTGCTGATCCCCGGAGACTTGAGCG    337
                     .||.|||..|||.||..|||||||.||.|||.|.||.|||||.||.||||
RBAM_007610__    288 AATTGAAAAAGAGGGAAGAAAAGCCGTTCTGTTGCCGGGAGATTTAAGCG    337

BSNT_01769___    338 ACGAATCCTTTTGCCAAGATCTGGTCAAACAGGCGCAGCAGGAGCTCGGA    387
                     |.|||.|.||||||..|||..|||...||.|.|||.|.||.|||||.||.
RBAM_007610__    338 ATGAAGCGTTTTGCGGAGAATTGGCGGAAAAAGCGTATCAAGAGCTTGGC    387

BSNT_01769___    388 GGACTTGATGTGCTAGCGCTCGTTGCAGGCAAACAGAAAGCAGTCGAAAA    437
                     ||.|||||...|||.||.||.||.||.|||||||||.|.|||||.||..|
RBAM_007610__    388 GGTCTTGACACGCTCGCTCTTGTCGCCGGCAAACAGCAGGCAGTGGATGA    437

BSNT_01769___    438 CATCGAAGATC-TGCCTACTGAACAAATCTATAAAACATTTGAAGTGAAC    486
                     .|||...|||| |||| ||.||||||||||||.|||||||||||||.|||
RBAM_007610__    438 TATCAGCGATCTTGCC-ACAGAACAAATCTATCAAACATTTGAAGTCAAC    486

BSNT_01769___    487 GTCTTTTCCCTTTACTGGGTTGTAAAAGCGGCGCTTCCGTATTTGCCGGA    536
                     ||.||.||.||.||.|||.|.||.|||||.||||||||||||.|||||||
RBAM_007610__    487 GTATTCTCGCTGTATTGGCTCGTCAAAGCCGCGCTTCCGTATCTGCCGGA    536

BSNT_01769___    537 GGGAGCTTCAATTATCACAACTACCTCAGTTGAAGGCTATAATCCAAGCC    586
                     .||.||.||.||||||||.||.||.||.||.|||||.|||||||||||||
RBAM_007610__    537 AGGCGCGTCTATTATCACGACAACGTCCGTAGAAGGGTATAATCCAAGCC    586

BSNT_01769___    587 CGATGCTGTTAGATTACGCAGCAACGAAAAACGCCATTATCGGCTTTACC    636
                     ||||||||||.|||||.||.||.||||||.|.|||||||||||.|||||.
RBAM_007610__    587 CGATGCTGTTGGATTATGCCGCGACGAAACATGCCATTATCGGTTTTACT    636

BSNT_01769___    637 GTCGGACTGGGAAAACAGCTTGCTTCCAAAGGCATCAGAGTAAATTCAGT    686
                     |||||..|.|||||||||||.||....|||||.||||||||.||.||.||
RBAM_007610__    637 GTCGGCTTAGGAAAACAGCTGGCGAATAAAGGAATCAGAGTCAACTCGGT    686

BSNT_01769___    687 TGCGCCCGGACCAATTTGGACACCGCTGCAAATTTCCGGCGGACAGCCGA    736
                     .|||||.||.||.||.|||||.||.|||||.|||||.||.||.|||||  
RBAM_007610__    687 AGCGCCGGGGCCGATCTGGACGCCTCTGCAGATTTCGGGAGGGCAGCC--    734

BSNT_01769___    737 CG--GAAAACATCCCGAAATTCGGACAAGG-CACGCCGCCAGCCCCATTA    783
                     ||  ||||||||.||||||||||| .|||| .||.|||.|.|..||||||
RBAM_007610__    735 CGGTGAAAACATTCCGAAATTCGG-TAAGGAAACACCGGCCGTTCCATTA    783

BSNT_01769___    784 ACTCGCGCTGGGCAGCCAGCGGAATTGGCTGATGTTTATGTATTTCTAGC    833
                     |..|||||.||.|||||.|||||..|.||.|...|||||||.|||.|.||
RBAM_007610__    784 AAGCGCGCCGGACAGCCGGCGGAGCTAGCAGGGATTTATGTCTTTTTGGC    833

BSNT_01769___    834 TTCAG-AGAATTCAAGCTATGTGACCTCTCAGGTATACGGAATCACCGGA    882
                     .|||| |||| ||.|||||||||||.||.||..|.|||.|..|.|.||||
RBAM_007610__    834 CTCAGAAGAA-TCGAGCTATGTGACATCCCAAATTTACAGTGTAAGCGGA    882

BSNT_01769___    883 GGAATTCCGACGGCATAG-    900
                     |||||||||||.||.| | 
RBAM_007610__    883 GGAATTCCGACAGCGT-GA    900


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01769 and RBAM_007610

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
