Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01247 and RBAM_007560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01247___yfnD.1.9828.seq
# -bsequence dna-align/RBAM_007560___yfnD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01247___yfnD-RBAM_007560___yfnD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01247___yfnD-RBAM_007560___yfnD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01247___yfnD
# 2: RBAM_007560___yfnD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity: 661/953 (69.4%)
# Similarity: 661/953 (69.4%)
# Gaps: 91/953 ( 9.5%)
# Score: 2352.5
#
#
#=======================================
BSNT_01247___ 0 -------------------------------------------------- 0
RBAM_007560__ 1 GTGAGTAAATATCATTTTTCAACCATTGTTTCCAGAACGCATATCTTTAA 50
BSNT_01247___ 1 ----------ATGATTCATTCTCTCCATGAGCATTGCGATGATTTTCATT 40
|||||||||||||||||||||||||||...|||||||||.
RBAM_007560__ 51 ACTGATGCCGATGATTCATTCTCTCCATGAGCATTGCCGGGATTTTCATC 100
BSNT_01247___ 41 TATATGTGCTGTGTGTCGACCAGAAAGCGTATGAATTGCTTCAGCACGTT 90
|.|||||||||||||||||||||||.||||||||||||||.|||||.||.
RBAM_007560__ 101 TGTATGTGCTGTGTGTCGACCAGAAGGCGTATGAATTGCTCCAGCAGGTG 150
BSNT_01247___ 91 CCATGGGAGCATGTAACCTTTGTGCAGCTGCATGAAATGGAAGACCCGGA 140
||.|||||.|||||.||....||.|||||.|||||||||||.||||||||
RBAM_007560__ 151 CCGTGGGAACATGTCACGGCGGTTCAGCTCCATGAAATGGAGGACCCGGA 200
BSNT_01247___ 141 GCTG-TTGAAAGCGAAAAGCAACAGAACGTTTCATGAATATTGCTGGACG 189
|||| ||| ||||.||..||..|.|.||||||||||||||||||||||||
RBAM_007560__ 201 GCTGCTTG-AAGCAAAGGGCGGCCGGACGTTTCATGAATATTGCTGGACG 249
BSNT_01247___ 190 TTAAAGCCCGCCTTTTTGTTTCATGTGATGAGCAAGTGGGATGACGCTGA 239
.|.||.||.||.|||.||||.||||||||||...|||..|||||.||.||
RBAM_007560__ 250 CTGAAACCGGCATTTCTGTTCCATGTGATGACGGAGTATGATGAAGCCGA 299
BSNT_01247___ 240 ATACTTTGCCCATATGGATACGGATCTATTTTTCTTTTCTGATCCG---- 285
|||.||||||||..||||.||.|||||.||||||||.||.|||.||
RBAM_007560__ 300 ATATTTTGCCCACTTGGACACCGATCTCTTTTTCTTCTCAGATGCGGGCG 349
BSNT_01247___ 286 -GCACGTATTTTTGCAGAAAACCCAACGGCGTCTCTGTATTTGACTGATC 334
|| |.|||||.|||||.||....||.||.||.|.|.||||.||||
RBAM_007560__ 350 AGC-----TGTTTGCGGAAAAGCCGGATGCTTCCCTTTTTCTGACGGATC 394
BSNT_01247___ 335 ATCGTAATTCGCCGCGCTTCATGTCCTACTACGACCGAACCGGACGCTTT 384
|.||.|||||....||.||...|||.||.|||.|.|..||.||.|..|..
RBAM_007560__ 395 ACCGCAATTCAGAACGGTTTGCGTCTTATTACAAGCTGACAGGGCAGTAC 444
BSNT_01247___ 385 AATACAGGCTTTGTCGGTGCCGGTAATACAAAGGAAGCATATGAAGCGGT 434
||.||.||.||||||||.|||.|.|||||...||||||.|||...|||||
RBAM_007560__ 445 AACACCGGGTTTGTCGGCGCCCGGAATACCGGGGAAGCGTATCGGGCGGT 494
BSNT_01247___ 435 GTGGCAGTGGAGACAGGACTGTATTGAATTTTGCACGGTCGAAATGGATA 484
.|||||||||||.|||||.||.||....|.|||.|||||.||.|||.||.
RBAM_007560__ 495 CTGGCAGTGGAGGCAGGATTGCATCTCCTATTGTACGGTGGAGATGAATG 544
BSNT_01247___ 485 CGGAACGAAAGACATATGGTGATCAAAGATATGTGGAGAAATGGCCGGAG 534
..|||..|||||||||.|||||||||||.|||||.||.||.|||||.|.|
RBAM_007560__ 545 AAGAAAAAAAGACATACGGTGATCAAAGGTATGTTGAAAAGTGGCCCGCG 594
BSNT_01247___ 535 CAGTTTAAAGGTGTTCATGTTGTCA---AATCCATAGGAGCCAATACAGC 581
||||||.|||..||||| ||||| |.||.||.||.||.|||.|.||
RBAM_007560__ 595 CAGTTTGAAGACGTTCA---TGTCACGGAGTCGATCGGCGCGAATGCGGC 641
BSNT_01247___ 582 GCTTTGGAATATCGAAAACTATAAGGTCGGGCAAAAGGACGGCCGCG-TG 630
|||.||||||||.||..|.|||.|.|||.|.| .|..||||.|.| ||
RBAM_007560__ 642 GCTGTGGAATATTGAGCAATATGACGTCAGCC---TGCGCGGCGGGGCTG 688
BSNT_01247___ 631 TATATAG---ATGAAACGCCGCTGATTTTCTATCATTTCTCTGGGTTTAC 677
||||| | ||||.||.|||||||||||.||||||||.||.||.|||||
RBAM_007560__ 689 TATAT-GTCAATGACACCCCGCTGATTTTTTATCATTTTTCAGGCTTTAC 737
BSNT_01247___ 678 ACTGGTGACAGAAAAAGAGTTTAATCTTTGCTGGTACTATCGGATTGAAG 727
.||.||.||.||.||.||.||.|.|||.|||||||||||||..|||||.|
RBAM_007560__ 738 GCTCGTCACGGAGAACGAATTCAGTCTGTGCTGGTACTATCACATTGATG 787
BSNT_01247___ 728 ACGAAGCGACAATTGAGATGATTTATATGCCGTATATATTAAATCTGAAA 777
||||.||||||.|..|.||||||||..|||||||.||...|||..|.|||
RBAM_007560__ 788 ACGAGGCGACAGTCAATATGATTTACGTGCCGTACATCAAAAACGTAAAA 837
BSNT_01247___ 778 AGATGGATTGATGAAATACAGTCGGCGTTTCCGGACTTTGCG-GATGGCT 826
|.|||||||||||||||.||....||||||||.|| |||..| ||.||.|
RBAM_007560__ 838 AAATGGATTGATGAAATTCAAAAAGCGTTTCCTGA-TTTCAGAGACGGGT 886
BSNT_01247___ 827 TTATCCCGAAGCACGCAGTGCCTGACACTCA-TTTTATCCAGCTGGA--T 873
||||.|||||..|.||.||.||||||||||| ||||||.|.|.||.| .
RBAM_007560__ 887 TTATTCCGAAATATGCGGTTCCTGACACTCATTTTTATACGGTTGAAACA 936
BSNT_01247___ 874 TAA 876
|||
RBAM_007560__ 937 TAA 939
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