Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01247 and RBAM_007560

See Amino acid alignment / Visit BSNT_01247 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_01247___yfnD.1.9828.seq
#    -bsequence dna-align/RBAM_007560___yfnD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01247___yfnD-RBAM_007560___yfnD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01247___yfnD-RBAM_007560___yfnD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01247___yfnD
# 2: RBAM_007560___yfnD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity:     661/953 (69.4%)
# Similarity:   661/953 (69.4%)
# Gaps:          91/953 ( 9.5%)
# Score: 2352.5
# 
#
#=======================================

BSNT_01247___      0 --------------------------------------------------      0
                                                                       
RBAM_007560__      1 GTGAGTAAATATCATTTTTCAACCATTGTTTCCAGAACGCATATCTTTAA     50

BSNT_01247___      1 ----------ATGATTCATTCTCTCCATGAGCATTGCGATGATTTTCATT     40
                               |||||||||||||||||||||||||||...|||||||||.
RBAM_007560__     51 ACTGATGCCGATGATTCATTCTCTCCATGAGCATTGCCGGGATTTTCATC    100

BSNT_01247___     41 TATATGTGCTGTGTGTCGACCAGAAAGCGTATGAATTGCTTCAGCACGTT     90
                     |.|||||||||||||||||||||||.||||||||||||||.|||||.||.
RBAM_007560__    101 TGTATGTGCTGTGTGTCGACCAGAAGGCGTATGAATTGCTCCAGCAGGTG    150

BSNT_01247___     91 CCATGGGAGCATGTAACCTTTGTGCAGCTGCATGAAATGGAAGACCCGGA    140
                     ||.|||||.|||||.||....||.|||||.|||||||||||.||||||||
RBAM_007560__    151 CCGTGGGAACATGTCACGGCGGTTCAGCTCCATGAAATGGAGGACCCGGA    200

BSNT_01247___    141 GCTG-TTGAAAGCGAAAAGCAACAGAACGTTTCATGAATATTGCTGGACG    189
                     |||| ||| ||||.||..||..|.|.||||||||||||||||||||||||
RBAM_007560__    201 GCTGCTTG-AAGCAAAGGGCGGCCGGACGTTTCATGAATATTGCTGGACG    249

BSNT_01247___    190 TTAAAGCCCGCCTTTTTGTTTCATGTGATGAGCAAGTGGGATGACGCTGA    239
                     .|.||.||.||.|||.||||.||||||||||...|||..|||||.||.||
RBAM_007560__    250 CTGAAACCGGCATTTCTGTTCCATGTGATGACGGAGTATGATGAAGCCGA    299

BSNT_01247___    240 ATACTTTGCCCATATGGATACGGATCTATTTTTCTTTTCTGATCCG----    285
                     |||.||||||||..||||.||.|||||.||||||||.||.|||.||    
RBAM_007560__    300 ATATTTTGCCCACTTGGACACCGATCTCTTTTTCTTCTCAGATGCGGGCG    349

BSNT_01247___    286 -GCACGTATTTTTGCAGAAAACCCAACGGCGTCTCTGTATTTGACTGATC    334
                      ||     |.|||||.|||||.||....||.||.||.|.|.||||.||||
RBAM_007560__    350 AGC-----TGTTTGCGGAAAAGCCGGATGCTTCCCTTTTTCTGACGGATC    394

BSNT_01247___    335 ATCGTAATTCGCCGCGCTTCATGTCCTACTACGACCGAACCGGACGCTTT    384
                     |.||.|||||....||.||...|||.||.|||.|.|..||.||.|..|..
RBAM_007560__    395 ACCGCAATTCAGAACGGTTTGCGTCTTATTACAAGCTGACAGGGCAGTAC    444

BSNT_01247___    385 AATACAGGCTTTGTCGGTGCCGGTAATACAAAGGAAGCATATGAAGCGGT    434
                     ||.||.||.||||||||.|||.|.|||||...||||||.|||...|||||
RBAM_007560__    445 AACACCGGGTTTGTCGGCGCCCGGAATACCGGGGAAGCGTATCGGGCGGT    494

BSNT_01247___    435 GTGGCAGTGGAGACAGGACTGTATTGAATTTTGCACGGTCGAAATGGATA    484
                     .|||||||||||.|||||.||.||....|.|||.|||||.||.|||.||.
RBAM_007560__    495 CTGGCAGTGGAGGCAGGATTGCATCTCCTATTGTACGGTGGAGATGAATG    544

BSNT_01247___    485 CGGAACGAAAGACATATGGTGATCAAAGATATGTGGAGAAATGGCCGGAG    534
                     ..|||..|||||||||.|||||||||||.|||||.||.||.|||||.|.|
RBAM_007560__    545 AAGAAAAAAAGACATACGGTGATCAAAGGTATGTTGAAAAGTGGCCCGCG    594

BSNT_01247___    535 CAGTTTAAAGGTGTTCATGTTGTCA---AATCCATAGGAGCCAATACAGC    581
                     ||||||.|||..|||||   |||||   |.||.||.||.||.|||.|.||
RBAM_007560__    595 CAGTTTGAAGACGTTCA---TGTCACGGAGTCGATCGGCGCGAATGCGGC    641

BSNT_01247___    582 GCTTTGGAATATCGAAAACTATAAGGTCGGGCAAAAGGACGGCCGCG-TG    630
                     |||.||||||||.||..|.|||.|.|||.|.|   .|..||||.|.| ||
RBAM_007560__    642 GCTGTGGAATATTGAGCAATATGACGTCAGCC---TGCGCGGCGGGGCTG    688

BSNT_01247___    631 TATATAG---ATGAAACGCCGCTGATTTTCTATCATTTCTCTGGGTTTAC    677
                     ||||| |   ||||.||.|||||||||||.||||||||.||.||.|||||
RBAM_007560__    689 TATAT-GTCAATGACACCCCGCTGATTTTTTATCATTTTTCAGGCTTTAC    737

BSNT_01247___    678 ACTGGTGACAGAAAAAGAGTTTAATCTTTGCTGGTACTATCGGATTGAAG    727
                     .||.||.||.||.||.||.||.|.|||.|||||||||||||..|||||.|
RBAM_007560__    738 GCTCGTCACGGAGAACGAATTCAGTCTGTGCTGGTACTATCACATTGATG    787

BSNT_01247___    728 ACGAAGCGACAATTGAGATGATTTATATGCCGTATATATTAAATCTGAAA    777
                     ||||.||||||.|..|.||||||||..|||||||.||...|||..|.|||
RBAM_007560__    788 ACGAGGCGACAGTCAATATGATTTACGTGCCGTACATCAAAAACGTAAAA    837

BSNT_01247___    778 AGATGGATTGATGAAATACAGTCGGCGTTTCCGGACTTTGCG-GATGGCT    826
                     |.|||||||||||||||.||....||||||||.|| |||..| ||.||.|
RBAM_007560__    838 AAATGGATTGATGAAATTCAAAAAGCGTTTCCTGA-TTTCAGAGACGGGT    886

BSNT_01247___    827 TTATCCCGAAGCACGCAGTGCCTGACACTCA-TTTTATCCAGCTGGA--T    873
                     ||||.|||||..|.||.||.||||||||||| ||||||.|.|.||.|  .
RBAM_007560__    887 TTATTCCGAAATATGCGGTTCCTGACACTCATTTTTATACGGTTGAAACA    936

BSNT_01247___    874 TAA    876
                     |||
RBAM_007560__    937 TAA    939


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