Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01175 and RBAM_007270

See Amino acid alignment / Visit BSNT_01175 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:53
# Commandline: needle
#    -asequence dna-align/BSNT_01175___yesJ.1.9828.seq
#    -bsequence dna-align/RBAM_007270___yesJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01175___yesJ-RBAM_007270___yesJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01175___yesJ-RBAM_007270___yesJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01175___yesJ
# 2: RBAM_007270___yesJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 565
# Identity:     382/565 (67.6%)
# Similarity:   382/565 (67.6%)
# Gaps:          53/565 ( 9.4%)
# Score: 1107.0
# 
#
#=======================================

BSNT_01175___      1 ATGTCAGCTTTTAAGATTGAGAACGAAACGATTGCAGATGGATTTTACGC     50
                     |||.||.||||||.||||..|.|.||.|||   ||.|  ||...||.||.
RBAM_007270__      1 ATGACACCTTTTACGATTACGGAGGAGACG---GCGG--GGGCATTCCGG     45

BSNT_01175___     51 GT---GTCCGGCCGTCTATGAGGATGCAGAATCGATTACCGGGT------     91
                     ||   .||||.||| ..|.||.||||||.||  ||      |||      
RBAM_007270__     46 GTCACCTCCGCCCG-GAAAGATGATGCAAAA--GA------GGTCATGGA     86

BSNT_01175___     92 --TGCTCGTCCGAACAGCTGAATGGCTCCGAGATCGGGGTTCTAACCAAT    139
                       |||||||.|.|.|.||.||||||||.||.|||...||.||.|||||.|
RBAM_007270__     87 TCTGCTCGTGCAAGCGGCAGAATGGCTTCGCGATAAAGGGTCGAACCAGT    136

BSNT_01175___    140 GGAGCGGACTTCTGAAAGGGCAAGATATACATGATATCACGGG-GTCAAT    188
                     |||||||.|||||..|||||.||||||..||..|||| .|||| |.|.||
RBAM_007270__    137 GGAGCGGCCTTCTAGAAGGGGAAGATACCCACAATAT-GCGGGAGGCGAT    185

BSNT_01175___    189 TG-AAAAGGGACATGTGTTTGTGTTTAAAAAAGATGAAGAGCTTG-CGGC    236
                     .| ..||||| .||||.|||.|.||.|...|..||||||||||.| ||||
RBAM_007270__    186 CGCCCAAGGG-TATGTTTTTTTATTCAGGCAGAATGAAGAGCTGGCCGGC    234

BSNT_01175___    237 TGTCGTGATGCTGCTGCCTGAACCGAGCGAGTGGGACCGGACG-CTTTGG    285
                      |||||.||||||||.||.|||.|.||||.|||||| |.|||| ||||||
RBAM_007270__    235 -GTCGTCATGCTGCTTCCCGAAGCAAGCGGGTGGGA-CAGACGTCTTTGG    282

BSNT_01175___    286 GGAGACGATGGGCATGAGGAGTCCATTTATTTACATCGCCTCGC-AGTAA    334
                     ||.||.||.||.||||||||||||.|.|||.|.||.||.||.|| |.|||
RBAM_007270__    283 GGCGATGAAGGACATGAGGAGTCCGTATATCTCCACCGGCTGGCGATTAA    332

BSNT_01175___    335 GCCGCCGGTTTGCGGGACAGGGGCTTGGAGCCCGCGTCCTTCA----GTG    380
                      |.|.||||||||.||...||||||.||   ||| |.|..|||    .||
RBAM_007270__    333 -CAGGCGGTTTGCAGGGGTGGGGCTCGG---CCG-GACAATCATGACTTG    377

BSNT_01175___    381 GGCGGAGACGGGCATACACTT-TCCGGAAAAAACGCGGATCCGGCTTGAC    429
                     ||||||||||||..| ..||| |||||.|||||||...||||||||.||.
RBAM_007270__    378 GGCGGAGACGGGTGT-GTCTTGTCCGGGAAAAACGAAAATCCGGCTCGAT    426

BSNT_01175___    430 TGTGTCGCTGATAGCGACGCCCTGCATTCCTTTTATCGGC-GTATGGGAT    478
                     ||.||..|.||.|.|.|.||.||.||.||.||||| |.|| |.|||||.|
RBAM_007270__    427 TGCGTGTCCGAAAACAAGGCGCTTCAGTCGTTTTA-CAGCGGAATGGGGT    475

BSNT_01175___    479 ATGAATTCATGGGTGCTGATGCGTCCGGATATCATTTGTTTGAGAAAGAG    528
                     |.||||..|..||..|   .|||.|.||.||||||||||||||.|||.||
RBAM_007270__    476 ACGAATCAAAAGGACC---CGCGCCGGGTTATCATTTGTTTGAAAAAAAG    522

BSNT_01175___    529 ATTACGGCAGAATAA    543
                     .|.|  |.| |||||
RBAM_007270__    523 GTGA--GTA-AATAA    534


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