Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04127 and RBAM_007150
See
Amino acid alignment /
Visit
BSNT_04127 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_04127.1.9828.seq
# -bsequence dna-align/RBAM_007150.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04127-RBAM_007150.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04127-RBAM_007150.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04127
# 2: RBAM_007150
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1582
# Identity: 740/1582 (46.8%)
# Similarity: 740/1582 (46.8%)
# Gaps: 617/1582 (39.0%)
# Score: 1237.0
#
#
#=======================================
BSNT_04127 1 ----------------------------------------------ATGA 4
||||
RBAM_007150 1 ATGAAATCGAATTATAAGAGGATTGGTGATTGCATTCGGTTAGTTGATGA 50
BSNT_04127 5 GTAAGGAA---------------AAGAAGACCATTGAAGAATTAGTAGGA 39
|||||| ||.| |||.|| .|||||
RBAM_007150 51 --AAGGAATGTTAATCTTAATGTAACA--ACCCTT---------TTAGGA 87
BSNT_04127 40 GAAACTATAGTGCCAGTAGAAGAGCAGCCTT---ATGAACTGCCTGAA-- 84
..||.||| ||.||.||.|..|.| ||.|..||| ||
RBAM_007150 88 CTAAGTAT--------TACAAAAGAATTCATTCCATCAGTTGC---AAAT 126
BSNT_04127 85 --AATTGGA--------TATGGGTAAAATTATTAAATGGTTACGCAGTAT 124
||||||| || ||||.|||.|.|| |||
RBAM_007150 127 ACAATTGGAACAGATTTTA-----AAAACTATAAGAT----------TAT 161
BSNT_04127 125 GTCTAGATAAATATCGTAAGCCAGTTAATGC-TGAAGAAAGA-GCAAAAA 172
.|||.|||.| ||||| ||| ||.||.|..| |||
RBAM_007150 162 ---AAGAAAAAAA--------CAGTT--TGCTTGTAGCACCATGCA---- 194
BSNT_04127 173 GAGTAGGG---------AATATACC--TT--ATTATGGTGCTACTGGACA 209
||||.|| ||.||.|| || |||| ||||.|||
RBAM_007150 195 -AGTAAGGCGAGATAAAAAAATGCCAGTTGCATTA-----CTACAGGA-- 236
BSNT_04127 210 AGTTGGATGGATAGATGA--CTATCTTA-CAGATGAGGAACTTGTTCTTT 256
|| || ||||| |||||.|| |.|.||...|.|.||||.||
RBAM_007150 237 --TT------AT-GATGAAGCTATCATATCTGCTGCCTATCCTGTTTTT- 276
BSNT_04127 257 TGGGAGAAGATGGAGTTCCT------TTTTTA---GAGCCTTTCAAAAAT 297
||||.||.||.|.|| .||||| |||..||| |||
RBAM_007150 277 -----GAAGTTGTAGATACTGAGATGATTTTACCGGAGTATTT----AAT 317
BSNT_04127 298 AAAGCTTATATTATTAGGGAGAAAGCATGGGTTAACAACCATGCACACAT 347
.|.| |...|||.||| ||| ||.||| || |||.|.
RBAM_007150 318 GATG--TGGTTTAGTAG-----AAG--TGAGTT--------TG-ACAGAG 349
BSNT_04127 348 ATTAAGGTCTAACTTTGGTTCGGAAGGGAATTTATTCCTACTGCATTATT 397
| |.||| ||| |||||.| |||
RBAM_007150 350 A---------AGCTT--GTT----------TTTATGC---------TAT- 368
BSNT_04127 398 TGAACCAATTTAATTTTAACGG--GTATGTAAGTGGTACTACTAGATTGA 445
|..|..|.|||..|| |||| |.|||||.| |||||
RBAM_007150 369 -------AGGTGGTGTTAGAGGTAGTAT-TGAGTGGGA-----AGATT-- 403
BSNT_04127 446 AACTTACTCAGAAGAAAATGGCTATCA--TTCCTGTTCCTCTTCCGCCAC 493
||..| ||.||| || |.||.|||| ||||| .
RBAM_007150 404 ---TTTGT------AATATG-----CAACTCCCGGTTC--CTTCC----A 433
BSNT_04127 494 TCAATGAGCAAAAACGG--ATT--------GC-----------TGAG--- 519
|..|||||||||| || ||| || |.||
RBAM_007150 434 TTGATGAGCAAAA--GGAAATTATAAATAAGCACAAAATATTATTAGATA 481
BSNT_04127 520 -----AAAGTGGAGCGGCTTTTAAGT--AAAATT-GAAGAAGC------- 554
||.|||.|....|||||.|.| |||||| ||||||.|
RBAM_007150 482 GAATAAAGGTGAATAATCTTTTCATTCAAAAATTAGAAGAAACCGTACAG 531
BSNT_04127 555 --------AAAGCA---GTTGATTGAAGAAGCGAAGGAAACGTTTGAACT 593
.||||| |||.||||| .||||||.|
RBAM_007150 532 ACTATCTATAAGCAATGGTTTATTGA---------------CTTTGAATT 566
BSNT_04127 594 TC--------GTCGGGCATCGATTATAAGAACTATT--TTAAAAGAAGAA 633
|| .|.||..||| .|||||| |.|||.| |..|||.|.|||
RBAM_007150 567 TCCAAATCAATTGGGTAATC-CTTATAA-ATCTAGTGGTGGAAAAATGAA 614
BSNT_04127 634 --TTAAGT--AATGGTAAAC-------TTCCTACAGGTTGGAGAAATATA 672
|||| | |||..||||| |.||.|..|||||| |||.||.|
RBAM_007150 615 ATTTAA-TCCAATATTAAACACTGAGATACCGAAGGGTTGG-GAAGTAAA 662
BSNT_04127 673 AAGGTT-AAGGATTTGTT-TACCA-TTTTTGGAGGTGGAACTCCAAGTAA 719
|...|| |.||| |||| ||..| |...|||.||.||.||.|||..||.
RBAM_007150 663 ATCATTCACGGA--TGTTGTAAAAGTGGGTGGTGGGGGTACACCAGATAC 710
BSNT_04127 720 GGCAAAAGAAGAGTATTGGAATGGAAGAATACCAT-----------GGA- 757
..|.|..||....|||||||||||..|.||.|||| |||
RBAM_007150 711 AACTATTGATACTTATTGGAATGGTGGTATTCCATTTTTTACTCCGGGAG 760
BSNT_04127 758 ---TTTCTGCTAAAGATATGA--------AGAC-----CACTTTTATCTC 791
|||| |.||||.|||.| |||| .|..|.|||||
RBAM_007150 761 ATGTTTC--CGAAAGTTATTATTGCCTTGAGACAGAAAAATCTGTATCT- 807
BSNT_04127 792 AAA--GACAATGGATTACATTACTGAGGAAGGTCTAAACAACTCATCAGC 839
||| | ||||||| ||| || |||
RBAM_007150 808 AAACTG-----GGATTAC---------GAA--------------AT-AGC 828
BSNT_04127 840 GAAGCTTGCAAAAAGAGGTTCAGTCGCAATGGTTGTAAGGA--GTGGTAT 887
|| |.||||| ||...||.||| ||..| || |
RBAM_007150 829 --AG--TACAAAA-----TTATATCCCAA-------AAACACCGT----T 858
BSNT_04127 888 TTTGCAA-----AGAACGCTCCCAGTTG----CAT---TTTTACT----C 921
||||..| |||..| .|||||| .|| |||..|| |
RBAM_007150 859 TTTGTTACAGCTAGAGGG---ACAGTTGGGGCTATAGCTTTAGCTGGGAC 905
BSNT_04127 922 TCAGAATGTACAGTTAATCAAGATTTG-AAGGTATTCGATTCTGGAGATG 970
|.| |||| |||.|.|||||| |.||| .|.|.||| ||| .||.|||
RBAM_007150 906 TGA-AATG-ACAATGAATCAA-AGTTGTTATGCATT-GAT--GGGGGAT- 948
BSNT_04127 971 AATTAATAAATAAGTACTTCTTATGGTATGTAAAAGGCAATGAAAGGAAC 1020
|||.|||| ||| |||..| .|||| .|||
RBAM_007150 949 --------AATCAGTA----TTA---TATCCA----CCAAT-----TAAC 974
BSNT_04127 1021 --TTGTTAC----ATAACTATTCAAAATC-------TGGAACTACTGTTA 1057
|||.||| |.||.|.|..||||.| ||||.|...|.|||
RBAM_007150 975 TATTGCTACAATTAGAAGTTTAAAAAAACAAGCAAGTGGAGCGGTTTTTA 1024
BSNT_04127 1058 ATAGTATTGAATTTG-AAAAG--TTTAAGTCTCATGAAATCTTATTACCG 1104
|| |.||||| |.| ||||| |||..|...|| |||| .||..|
RBAM_007150 1025 AT-GCATTGA--TAGTAAAAGATTTTGCGGAGCA--AAAT----GTAGTG 1065
BSNT_04127 1105 CCTATGGACGTACTAAAGCA----GAAAATAGATAAAATTGAAAATGTAA 1150
| ||..|| |||||| | ||||||||.| ||.|||||.||.
RBAM_007150 1066 C--ATCCAC---CTAAAG-ATATCGAAAATAGTT----TTCAAAATATAG 1105
BSNT_04127 1151 TTGAAAAGG-----AAAAAAGTGCAAACGTTATGCTAAACTTAGCAAACT 1195
| |||| |.|.|| .|||| .||||..||||.|| .||||
RBAM_007150 1106 T----AAGGGGTTTATATAA-CGCAA--TTTATCTTAAAGTT---GAACT 1145
BSNT_04127 1196 CAATCGATGAATTGA--AATCTTCTATCCTTTCCAAA---GCTTTTCGAG 1240
.||| ||.|.| ||.| ||.| ||.| ||| |||||| |.
RBAM_007150 1146 AAAT-----AAGTTATTAAGC-TCAA--CTGT--AAAGCTGCTTTT--AT 1183
BSNT_04127 1241 GTGAACTCGGAACGAACGACCCAAGTGAAGAAAATGCGGTTG-AATTGT- 1288
.|.||||.|..||| |||| ..|.||||||.| ||| ||||.|
RBAM_007150 1184 CTAAACTTGCCACG-ACGA---GGGGGAAGAACA-----TTGAAATTCTC 1224
BSNT_04127 1289 TAAAAGAAGTGCTACAAGAACAAGTGAAATAG 1320
|.|
RBAM_007150 1225 TGA----------------------------- 1227
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.