Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01139 and RBAM_007040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:50
# Commandline: needle
# -asequence dna-align/BSNT_01139___yerI.1.9828.seq
# -bsequence dna-align/RBAM_007040___yerI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01139___yerI-RBAM_007040___yerI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01139___yerI-RBAM_007040___yerI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01139___yerI
# 2: RBAM_007040___yerI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity: 759/1013 (74.9%)
# Similarity: 759/1013 (74.9%)
# Gaps: 28/1013 ( 2.8%)
# Score: 2753.5
#
#
#=======================================
BSNT_01139___ 1 ATGCATAAAGATATCAAAAAAATATTTGAGGAAGAGCAGGTTTTGGCAGA 50
||||||||||||||.|||...||.|||||||||||..||||..|.||.||
RBAM_007040__ 1 ATGCATAAAGATATTAAAGCGATTTTTGAGGAAGATAAGGTGCTCGCTGA 50
BSNT_01139___ 51 AGCTGCAGCGAGATACGG-TTTCTCAAAAGATCAGGTGCGTTTTCTGGCT 99
|||.|..|..|.|||||| |||..|| ||.|.|..|||.|.||.
RBAM_007040__ 51 AGCAGGTGAAATATACGGCTTTACCA-------AGTTTCAATTTATTGCG 93
BSNT_01139___ 100 GATGCGGAAAACTATGTATATGAATGTATGAAAGACAATCAACCTTATAT 149
||.||.||.|||||.|||||||||..|.|||||||.||..||||||||||
RBAM_007040__ 94 GACGCCGAGAACTACGTATATGAAATTGTGAAAGATAACGAACCTTATAT 143
BSNT_01139___ 150 TTTAAAGATTACCCATACGATTCGGAGATCTTCTGATTATATGATGGGAG 199
.|||||.|||||.||||||||..|.|||.|..|.||.|||||..|.||||
RBAM_007040__ 144 CTTAAAAATTACGCATACGATCAGAAGAACACCGGAATATATTCTCGGAG 193
BSNT_01139___ 200 AGATGGAATGGCTCCGTCACCTTGCAATAGGG-GGAATTTCAGTAGCCAA 248
|.|||||||||||.|.|||.||.|||| |||| ||..||||||.|||.||
RBAM_007040__ 194 AAATGGAATGGCTTCATCATCTGGCAA-AGGGAGGGCTTTCAGCAGCAAA 242
BSNT_01139___ 249 ACCGCTCCCGTCGCTGAACGGAAAAGACGTAGAAGCAGTGCCGGACGGAA 298
.|||.|.||.||..|.||.||.|||||.||.||||.|||||||||.||||
RBAM_007040__ 243 GCCGATTCCTTCATTAAATGGCAAAGATGTCGAAGAAGTGCCGGATGGAA 292
BSNT_01139___ 299 ACGGCGGGTCATTTTTATTGAGAGTGTATGAGAAAGCGCCAGGGCAAAAA 348
|.|||||..|.||||||.|.|||||.|||||.||||||||.||.|..|||
RBAM_007040__ 293 AAGGCGGAGCGTTTTTAGTAAGAGTCTATGAAAAAGCGCCCGGACGCAAA 342
BSNT_01139___ 349 GTGGATGAATCGGACTGGAATGAAACGCTATTTTATGAGCTTGGCAGATA 398
|||||.|||||.||||||||.|.|||.||.|||||..|||||||.|..||
RBAM_007040__ 343 GTGGAGGAATCAGACTGGAACGGAACTCTGTTTTACCAGCTTGGAAAGTA 392
BSNT_01139___ 399 CACAGGCAGCATGCACAGCCTGACAAAAAGCTACAAATTGAGCAATCCCG 448
|||.||.|.|||||||.|.|||||.|||||||||....|||||.||||..
RBAM_007040__ 393 CACGGGGAACATGCACCGGCTGACGAAAAGCTACTGTCTGAGCGATCCGA 442
BSNT_01139___ 449 CTTTCAAAAGACAGGAATGGGATGAAGAGGAGCAATTAAAGCTGAGAAAA 498
|.|..|||||.|||||||||||||||||||||||..|.||||||||||||
RBAM_007040__ 443 CATATAAAAGGCAGGAATGGGATGAAGAGGAGCAGCTGAAGCTGAGAAAA 492
BSNT_01139___ 499 TATGTGCCTGAAGATCAG-ATAAAGGTGTTTCAGCAAGCCGATTCTTTGA 547
||.|||||.|.||||||| || ...||.|||.|||...|.|||.||.|.|
RBAM_007040__ 493 TACGTGCCCGCAGATCAGCAT-CTCGTATTTGAGCGGTCGGATGCTCTAA 541
BSNT_01139___ 548 TGAATGAACTGCGGAGGCTCCCGAAAAGCCAGGACAGCTATGGCTTGGTG 597
||.|..|||||||..|..|.|||||.|.||..||.|.|||.|||.|.|||
RBAM_007040__ 542 TGGAAAAACTGCGCCGTTTGCCGAAGAACCCTGAAAACTACGGCCTTGTG 591
BSNT_01139___ 598 CATGCGGATCTGCACCATGGCAATTTTAACTGGGATCATGGCAAAATCAC 647
||.||.|||||||||||.||||||||.||.|||||..|.||.||||||||
RBAM_007040__ 592 CACGCCGATCTGCACCACGGCAATTTCAATTGGGACAACGGAAAAATCAC 641
BSNT_01139___ 648 GGCATTTGATTTTGATGATATCGGCTACAACTGGTTTGTTAACGATATTA 697
.|||||||||||||||||||||||||||||.||||||||.||.|||||.|
RBAM_007040__ 642 TGCATTTGATTTTGATGATATCGGCTACAATTGGTTTGTGAATGATATCA 691
BSNT_01139___ 698 GCATTCTTCTCTACA--ATGTCCTGTGGTATCCTGTTGTGCCATATGATG 745
|.|||||.||.|||| |||| ||||||||||.||..|.||.|||||.|
RBAM_007040__ 692 GTATTCTGCTGTACAACATGT--TGTGGTATCCGGTCATCCCGTATGAAG 739
BSNT_01139___ 746 ATAAAGCTGCGTTTACAGAAGAATTTATGACGCATTTTATGAAAGGGTAC 795
|.||.||.||||||||.|..|||||.|||||.||.|||||||||||.|||
RBAM_007040__ 740 ACAAGGCCGCGTTTACGGGTGAATTCATGACTCACTTTATGAAAGGCTAC 789
BSNT_01139___ 796 TGGGAGGAAAATGAGCTTGACCCTGCATGGCTGATGATA---ATACCTGA 842
.||||.||||||||.||||||||.||.||||| ||| | ||.||.||
RBAM_007040__ 790 AGGGAAGAAAATGACCTTGACCCCGCCTGGCT--TGA-ACACATCCCGGA 836
BSNT_01139___ 843 TTTCCTCCGCCTTCGCCATATGCTGATTTACGGATTGCTGCATCAGATGT 892
|||.|||||.||.||||||||||||||.||||||||..||||||||..||
RBAM_007040__ 837 TTTTCTCCGGCTGCGCCATATGCTGATCTACGGATTATTGCATCAGGCGT 886
BSNT_01139___ 893 TTGACCTTAACACAATAGGAGAAGAGGAAAAAGAAATGCTG---GCCGGT 939
|||||||.||..||.|.||.||.||||||...||.|||||| |||
RBAM_007040__ 887 TTGACCTCAATTCACTCGGGGACGAGGAACGTGAGATGCTGAAAGCC--- 933
BSNT_01139___ 940 TTCAGAAGAGATATAGAGAATGGCACGCCGATTACAGCATTTGATTTTTC 989
|||||..|.|||||.||.||.|..||.||||||||.|..|.|.|.|||||
RBAM_007040__ 934 TTCAGGCGCGATATCGAAAACGAAACCCCGATTACGGAGTATAACTTTTC 983
BSNT_01139___ 990 AGCACTGGTGTAG 1002
.|||.|.||.||.
RBAM_007040__ 984 TGCATTCGTATAA 996
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