Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01131 and RBAM_007000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_01131___pcrB.1.9828.seq
# -bsequence dna-align/RBAM_007000___pcrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01131___pcrB-RBAM_007000___pcrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01131___pcrB-RBAM_007000___pcrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01131___pcrB
# 2: RBAM_007000___pcrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 700
# Identity: 546/700 (78.0%)
# Similarity: 546/700 (78.0%)
# Gaps: 23/700 ( 3.3%)
# Score: 2042.5
#
#
#=======================================
BSNT_01131___ 1 GTGTACGATG-TAACAGAGTGGAAGCATGTCTTTAAACTCGATCCAAATA 49
.||||||||| |||| ||||||||||||||.||||||||||||||.||||
RBAM_007000__ 1 ATGTACGATGTTAAC-GAGTGGAAGCATGTTTTTAAACTCGATCCGAATA 49
BSNT_01131___ 50 AAGATTTGCCTGACGAACAGCTGGAGATTCTTTGCGAATCAGGAACGGAT 99
|||||||.||.||.|||||||||||....|||||.||||||||.||.||.
RBAM_007000__ 50 AAGATTTACCGGATGAACAGCTGGAACGGCTTTGTGAATCAGGGACTGAC 99
BSNT_01131___ 100 GCGGTCATT---ATCGGAGGCAGTGATGGTGTGACAGAGGATAATGTCCT 146
|| |||| ||||||||.||.||...|.|.||.|||||.|||||.||
RBAM_007000__ 100 GC---CATTGTGATCGGAGGAAGCGACAATATCACCGAGGACAATGTGCT 146
BSNT_01131___ 147 GCGGATGATGTCTAAGGTAAGACGGTTTTTGGTGCCGTGTGTCCTTGAGG 196
|.|..|||||||.|||||..|.||||||||.||||||||.||.|||||||
RBAM_007000__ 147 GAGACTGATGTCAAAGGTGCGGCGGTTTTTAGTGCCGTGCGTACTTGAGG 196
BSNT_01131___ 197 TATCAGCGATTGAAGCGATCGTTCCCGGCTTTGA-CTTATATTTTATTCC 245
|.||..|||||||..|.||.||.|||||.||||| ||| |||||.|||||
RBAM_007000__ 197 TGTCGACGATTGATTCCATTGTGCCCGGGTTTGATCTT-TATTTCATTCC 245
BSNT_01131___ 246 GAGTGTATTAAACAGCAAAAACGCGGATTGGATTGTCGGAATGCACCAGA 295
||||||..|.|||||||||||.|||||.|||||||||||.|||||.||..
RBAM_007000__ 246 GAGTGTGCTCAACAGCAAAAAGGCGGACTGGATTGTCGGCATGCATCATC 295
BSNT_01131___ 296 AAGCCATGAAGGAATACGGAGAACTGATGTCTATGGAAGAAATCGTGGCG 345
|.||.|||||.|||||||||||.||.|||||.|||||.|||||||||.||
RBAM_007000__ 296 AGGCGATGAAAGAATACGGAGAGCTCATGTCAATGGAGGAAATCGTGACG 345
BSNT_01131___ 346 GAGGGCTACTGCATCGCAAATCCAGATTGCAAAGCCGCGGCACTGACTGA 395
||||||||||||||||..||.||.|||||.||.||.||.||..||||.||
RBAM_007000__ 346 GAGGGCTACTGCATCGTCAACCCTGATTGTAAGGCGGCCGCTTTGACGGA 395
BSNT_01131___ 396 AGCGGACGCCGATCT-GAATATGGATGATATTGTCGCCTATGCGCGTGTG 444
.|||||..|..||.| ||| |..||.||||||.|||||||||||||.||.
RBAM_007000__ 396 GGCGGATACACATATAGAA-ACAGAAGATATTCTCGCCTATGCGCGGGTC 444
BSNT_01131___ 445 TCGGAGC---TGCTGCAACTGCCGATTTTTTATTTAGAATACAGCGGCAT 491
.||||.| ||||.||.||.||||||||||||.|.|||||||||||.||
RBAM_007000__ 445 GCGGAACATTTGCTTCATCTCCCGATTTTTTATCTGGAATACAGCGGGAT 494
BSNT_01131___ 492 GCTTGGAGACATAGAAGCTGTCAAGAAAACGAAGGCTGTATTGGAAACGT 541
|||.|..|||||||||...||..||||||||||||||||..||||.|.||
RBAM_007000__ 495 GCTGGCGGACATAGAAATGGTGGAGAAAACGAAGGCTGTGCTGGACAAGT 544
BSNT_01131___ 542 CAACCTTGTTTTATGGGGGCGGCATCAAGGATGCGGAAACGGCCAAGCAG 591
|...|.|||||||.||.||||||||.||.||.||.||||||||..|.|.|
RBAM_007000__ 545 CCGTCCTGTTTTACGGAGGCGGCATTAAAGACGCAGAAACGGCGGAACGG 594
BSNT_01131___ 592 TAC-GCAGAGCATGCGGACGTGATCGTTGTAGGCAATGCTGTGTATGAAG 640
|.| ||.| .|||||.|||||.||||||||.||.|||||.||.|||||||
RBAM_007000__ 595 TTCGGCCG-TCATGCCGACGTCATCGTTGTCGGAAATGCCGTATATGAAG 643
BSNT_01131___ 641 ATTTTGA-CAGG-GCTTTGAAAACAGTAGCGGCTGTGAAAGGC-GAGTAG 687
||||||| |||| |||| |||||.||.|||||||| ||||.| .|||||
RBAM_007000__ 644 ATTTTGATCAGGCGCTT--AAAACGGTGGCGGCTGT-AAAGACAAAGTAG 690
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