Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01129 and RBAM_006990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_01129___yerD.1.9828.seq
# -bsequence dna-align/RBAM_006990___yerD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01129___yerD-RBAM_006990___yerD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01129___yerD-RBAM_006990___yerD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01129___yerD
# 2: RBAM_006990___yerD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1636
# Identity: 1162/1636 (71.0%)
# Similarity: 1162/1636 (71.0%)
# Gaps: 119/1636 ( 7.3%)
# Score: 3979.0
#
#
#=======================================
BSNT_01129___ 1 ATGGAAACCA--TCATAATAGCACTCATCGCATT-TATCACTGGGATTAT 47
|||||| || .|||.||.|.|||.|| || ||| |.| ||||.|
RBAM_006990__ 1 ATGGAA--CAAGCCATTATCGTACTGAT----TTGTAT-ATT--GATTTT 41
BSNT_01129___ 48 CGCTA-------TCCCGATCGTCTTGTTTGCCTGGATCTACATAAAGGAT 90
...|| ||||| .||...|||||..||||||.|||||||..||.
RBAM_006990__ 42 TATTATTTTAGTTCCCG-CCGCACTGTTTCTCTGGATATACATAAGAGAC 90
BSNT_01129___ 91 GAAAAACAGCAGGAGCACTCAATTCTTCGCAACTATCCCGTCATC-GGAA 139
|||||.|||.|.||.||.|||.|.||.|||||.|||||||| |.| ||||
RBAM_006990__ 91 GAAAAGCAGGAAGAACATTCAGTGCTGCGCAATTATCCCGT-AGCGGGAA 139
BSNT_01129___ 140 GGTTTCGGTATATCCTTGAAAAAATCGGGCCGGAGCTCAGACAGTATTTA 189
...|.||.|||||..|||||||||||||.||.|||||..|.|||||||||
RBAM_006990__ 140 AACTGCGCTATATATTTGAAAAAATCGGACCTGAGCTGCGGCAGTATTTA 189
BSNT_01129___ 190 TACAGCAATGACAATGAGGAGCAGCCTTTTTCACGAAAGGAATATGAGCA 239
|.|||||||||.||.||.||.|||||.|||||.||.|..||||||||.||
RBAM_006990__ 190 TTCAGCAATGATAACGAAGAACAGCCGTTTTCCCGGAGAGAATATGAACA 239
BSNT_01129___ 240 AACCGTCATCTCCGGCAAATACAAAAGCAGAATGATGGGCTTTGGATCTG 289
.||.|||||.|||||.||.||.||||||||||||||||||||.||.||.|
RBAM_006990__ 240 GACGGTCATGTCCGGAAAGTATAAAAGCAGAATGATGGGCTTCGGCTCAG 289
BSNT_01129___ 290 TAAGAGATTTTGATAAACCTGGCTATTATATCCGTAACGCTATGTTTCCA 339
.|.|.|||||..||.|.||.||||||||||||||||||||..|.||.||.
RBAM_006990__ 290 AACGGGATTTCAATCAGCCGGGCTATTATATCCGTAACGCCCTCTTCCCG 339
BSNT_01129___ 340 AAACAAAGGGAAGAAATGCACGTAAATCAAACGCCAAAAATTGAAACCCA 389
|||||||||||.||..|||.||.|.||||.|||||.||.||.||.||...
RBAM_006990__ 340 AAACAAAGGGAGGAGCTGCGCGCAGATCAGACGCCGAAGATCGACACGAT 389
BSNT_01129___ 390 AATCTATAAAATGGATGCTGACAATCTATTCAAACGCAAGGAGCATGCCG 439
..|.||||||||.||....|||||.||..|.|||||||..||.||...||
RBAM_006990__ 390 GGTATATAAAATTGACAAAGACAACCTGCTGAAACGCAGCGAACACCGCG 439
BSNT_01129___ 440 AACATATC-AAGGCAGACCCGTATTTTCTCCATCCTGATGATGTACAGGT 488
|| |.|.| ||.||.|||||.||||..||.|||||.||.|||||.||.||
RBAM_006990__ 440 AA-AAAGCAAAAGCGGACCCTTATTACCTGCATCCGGACGATGTGCAAGT 488
BSNT_01129___ 489 GATTGGCGAGC-ATACATGCGAGAAGCCATTTTATGTGAAGGGCTTAGTC 537
|||.||| .|| |.||||||.|.|||||.|||||||||||.||.|||.||
RBAM_006990__ 489 GATCGGC-CGCGACACATGCAAAAAGCCGTTTTATGTGAAAGGGTTAATC 537
BSNT_01129___ 538 GGCCAGTCCGCCATGAGCTACGGTTCTCTTGGAGAACGGGCTGTTACGGC 587
||.||.||.||.|||||||||||.||.|||||.||..||||..|.||.||
RBAM_006990__ 538 GGACAATCAGCGATGAGCTACGGCTCACTTGGCGACAGGGCAATCACCGC 587
BSNT_01129___ 588 GCTCTCAAAAGGGCTCCATCAGGCAGGCGGCACCTGGATGAATACAGGTG 637
.||.|||||||||||.||.|||||.||||||||.||||||||||||||.|
RBAM_006990__ 588 CCTGTCAAAAGGGCTGCACCAGGCCGGCGGCACATGGATGAATACAGGCG 637
BSNT_01129___ 638 AAGGAGGATTGTCTGAGTATCACTTAAAGGGCGGCGCCGATATCATTTGC 687
||||.||..||||||||||||||.|.||.||||||||.|||||.||.|||
RBAM_006990__ 638 AAGGCGGCCTGTCTGAGTATCACCTGAAAGGCGGCGCGGATATTATCTGC 687
BSNT_01129___ 688 CAAATCGGACCGGGCCTATTCGGCGTGCGCA--AAAGAAACGGGGAATTT 735
||||||||.||.|||||.||||||||.|||| .||| |.||.||||||
RBAM_006990__ 688 CAAATCGGCCCCGGCCTGTTCGGCGTCCGCACCGAAG--ATGGAGAATTT 735
BSNT_01129___ 736 TCGTGGGAGGAATTTAAAAGAAAAAGCAGGATTGACCAAATTAAAGCGTT 785
||||||||.||||||||.|.|||||||.|..|.||.||.||||||||.||
RBAM_006990__ 736 TCGTGGGAAGAATTTAAGAAAAAAAGCCGCCTCGAGCAGATTAAAGCCTT 785
BSNT_01129___ 786 TGAGCTAAAGCTGGCACAAGGAGCGAAAACCCGCGGCGGCCATGTGGACG 835
|||..|||||||.||.|||||.||||||.|..|.|||||.|||.|.||||
RBAM_006990__ 786 TGAATTAAAGCTTGCGCAAGGGGCGAAAGCAAGAGGCGGGCATATTGACG 835
BSNT_01129___ 836 GCGCCAAAGTATCAGAGGAAGTGGCAGATATTCGGAATGTCGAACCTGGA 885
|..|.||.||..|.||.|||.|.||.|..||..|.|||||..|.||.|||
RBAM_006990__ 836 GTTCAAAGGTGACCGAAGAAATTGCCGCCATCAGAAATGTGCAGCCCGGA 885
BSNT_01129___ 886 AAGTCGATTGACAGCCCGAACCGCTTTTATGAATTCTCAAAACCTCCTGA 935
.|.||.|||||||||||.||||||||..|.||.||||||||...|||.||
RBAM_006990__ 886 CAATCCATTGACAGCCCAAACCGCTTCAACGAGTTCTCAAATGTTCCGGA 935
BSNT_01129___ 936 AATGCTCGACTTTATTGAAAAACTTAGAGA-TGTCGGACAAAAGCCAGTC 984
.|||||.||.||.|||||.||| |||..|| ||||||..||||.||.|||
RBAM_006990__ 936 CATGCTTGATTTCATTGAGAAA-TTAAGGACTGTCGGCGAAAAACCGGTC 984
BSNT_01129___ 985 GGCATCAAACTGGTCGCAGGGCATCC----------TGAAGA----AT-- 1018
||.||||||.|.||| |.|||||.|| |||||| ||
RBAM_006990__ 985 GGTATCAAAATTGTC-CCGGGCAGCCGCAAAGACCTTGAAGACCTTATTT 1033
BSNT_01129___ 1019 --TGCATGAGCTTTTCTCTCATATGCAGAAAAGCGGAAAGCATCCGGATT 1066
||.||||| .|||| || ||.||.|.|||.||.|
RBAM_006990__ 1034 CCTGTATGAG-------TTCAT---CA-------GGCAAACTTCCCGACT 1066
BSNT_01129___ 1067 TTATCACGATCGACGGAAGTGAAGGCGGTACCGGAGCTTCCTTTTACGAG 1116
||||.|||||.|||||.||||||||.||.||.||||||||.||..|.|||
RBAM_006990__ 1067 TTATTACGATTGACGGCAGTGAAGGGGGAACGGGAGCTTCTTTCCATGAG 1116
BSNT_01129___ 1117 CTCGCGGATACAGTCGGCCTTCCGATTATGACAGCGCTGCCTATTGTTGA 1166
||.||||||.|.||||||||.||||||.||||.|..||.||..|||||||
RBAM_006990__ 1117 CTGGCGGATTCCGTCGGCCTGCCGATTCTGACCGGCCTTCCCCTTGTTGA 1166
BSNT_01129___ 1167 CACGCTTCTTAA-ACAGTACGGCTTTCGCAG-CCAGCTGAAAATCTTTGC 1214
|...|||.|.|| ||| |||||..|..| || ..||||||||||.||.||
RBAM_006990__ 1167 CGGCCTTTTGAAGACA-TACGGGATAAG-AGATAAGCTGAAAATTTTCGC 1214
BSNT_01129___ 1215 TTCCGGAAAGCTCCTGACCCCTGATAAAATCGCGGTTGCCTTAGCCCTCG 1264
.|||||||||||.||.||.||.|||||.||.||.||||||.|.||..|.|
RBAM_006990__ 1215 ATCCGGAAAGCTGCTCACTCCGGATAAGATTGCCGTTGCCCTCGCGTTAG 1264
BSNT_01129___ 1265 GCGCTGACTTTGTCAACATCGCACGCGGCATGATGTTTTCCGTTGGCTGC 1314
||||.||.||||||||.||.||.||.||.|||||||||||.||.|||||.
RBAM_006990__ 1265 GCGCGGATTTTGTCAATATTGCCCGGGGAATGATGTTTTCAGTCGGCTGT 1314
BSNT_01129___ 1315 ATCCGCGCTCTCGTCTGCCACACCAA-CA----CCTGTCCGGCAGGTGTG 1359
||||||||||..||.||||||||||| || |||||| ||.|||
RBAM_006990__ 1315 ATCCGCGCTCAAGTATGCCACACCAATCATTGTCCTGTC-----GGAGTG 1359
BSNT_01129___ 1360 GCGACGACAGATCCGAAATTGCAAAAAGCGTTGAGCGTTGAGGAAAAACA 1409
|||||.||.||.||.|||.|.||....|||.|.||..|.|||||.|||||
RBAM_006990__ 1360 GCGACAACCGACCCAAAACTTCAGCGCGCGCTCAGTATCGAGGATAAACA 1409
BSNT_01129___ 1410 GCATCGTGTCTGCAACTACGTCATTTCCCTGCGCGAGGGGCTGTTTAATC 1459
|||.||.||||||||||||||..|.||..||||.||.|||||||||.|.|
RBAM_006990__ 1410 GCACCGCGTCTGCAACTACGTGCTCTCATTGCGTGAAGGGCTGTTTCACC 1459
BSNT_01129___ 1460 TTGCAGCCGCAGCAGGGATCAATTCGCCGATTCACTTTTCCAAG--GAGC 1507
||||.||.||.||.||.||||..|||||||||||.||||| || ||.|
RBAM_006990__ 1460 TTGCCGCTGCGGCGGGCATCAGCTCGCCGATTCATTTTTC--AGCTGAAC 1507
BSNT_01129___ 1508 ATGTTGTCTATCGGAAAGAGGATGGCAGTATCATCGATATCGACAACCTG 1557
|..|.||.||.|||.|.||.||.||.|| ||||
RBAM_006990__ 1508 ACATCGTATACCGGGAGGAAGACGGAAG------------------CCTG 1539
BSNT_01129___ 1558 A--------TCCATCAATTTGTTT-------CATAA 1578
| .||..|..||||..| |||||
RBAM_006990__ 1540 AGGGAACTTCCCGGCCTTTTGAATCAGCACGCATAA 1575
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