Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01127 and RBAM_006980

See Amino acid alignment / Visit BSNT_01127 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_01127___yerC.1.9828.seq
#    -bsequence dna-align/RBAM_006980___yerC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01127___yerC-RBAM_006980___yerC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01127___yerC-RBAM_006980___yerC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01127___yerC
# 2: RBAM_006980___yerC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 319
# Identity:     256/319 (80.3%)
# Similarity:   256/319 (80.3%)
# Gaps:          11/319 ( 3.4%)
# Score: 1047.5
# 
#
#=======================================

BSNT_01127___      1 ATGCAAATCGATAAATTACGCGGCAAAGAGCTGGACCAGTTATTTAACTC     50
                     |||||||||||||||||||||||.|||||.|||||||||||||||...||
RBAM_006980__      1 ATGCAAATCGATAAATTACGCGGAAAAGAACTGGACCAGTTATTTTTATC     50

BSNT_01127___     51 GATCTTATCGCTGAAAGACCTGGAGGAATGTTACCGATTCTTCGATGATC    100
                     .||.||||||||||||||.|||||||||||.||.||.|||||.||.||||
RBAM_006980__     51 TATTTTATCGCTGAAAGATCTGGAGGAATGCTATCGTTTCTTTGACGATC    100

BSNT_01127___    101 TATGCACAATTAACGAAATTCAATCGCTGGCTCAGCGCCTTGAAGTGGCG    150
                     |.||.||.|||||.|||||.|||||||||||.|||||..|.||||||||.
RBAM_006980__    101 TTTGTACGATTAATGAAATCCAATCGCTGGCGCAGCGTTTGGAAGTGGCA    150

BSNT_01127___    151 CGCATGCTTCGCGAAGGAAACACGTATCATAAGATTGAAACAGAAACAGG    200
                     .|.|||||.|||||||||||.||||||||.||.||.||||..|||||.||
RBAM_006980__    151 AGAATGCTCCGCGAAGGAAATACGTATCACAAAATAGAAAGCGAAACGGG    200

BSNT_01127___    201 CGCTTCCACGGCTACGATTTCCCGTGTGAAACGCTGCTTAAATTACGGGA    250
                     .||||||||.||.|||||||||||.|||||.||||||||||||||.||.|
RBAM_006980__    201 TGCTTCCACAGCGACGATTTCCCGGGTGAAGCGCTGCTTAAATTATGGTA    250

BSNT_01127___    251 ATGACGCTTATGAAATGGCGCTTGACCGTGT----GAAGGAGAATGAAAC    296
                     |.|||||.||||||||||||||||||||.||    .|||||||||     
RBAM_006980__    251 ACGACGCCTATGAAATGGCGCTTGACCGCGTAAACAAAGGAGAAT-----    295

BSNT_01127___    297 AGAGTCTTCTTCCAAATAA    315
                       ..||.||..|.|..|||
RBAM_006980__    296 --CCTCCTCAGCTACGTAA    312


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