Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01124 and RBAM_006960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_01124___yerA.1.9828.seq
# -bsequence dna-align/RBAM_006960___yerA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01124___yerA-RBAM_006960___yerA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01124___yerA-RBAM_006960___yerA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01124___yerA
# 2: RBAM_006960___yerA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1757
# Identity: 1401/1757 (79.7%)
# Similarity: 1401/1757 (79.7%)
# Gaps: 28/1757 ( 1.6%)
# Score: 5555.5
#
#
#=======================================
BSNT_01124___ 1 ATGTCCGAACGCACCTTTAACTGGAAAAACAAAGACATCAGGGCACAGGT 50
|||||||||||.|||||||||||||||||.|||||||||||..||||||.
RBAM_006960__ 1 ATGTCCGAACGTACCTTTAACTGGAAAAATAAAGACATCAGATCACAGGC 50
BSNT_01124___ 51 TGATGTTGTAGACTCAAAGCTGCTTCCAACGCTCCTTTTACGGAATGCTC 100
.||||||||||||||||||||||||||||||||.|||||||||.||||||
RBAM_006960__ 51 GGATGTTGTAGACTCAAAGCTGCTTCCAACGCTACTTTTACGGGATGCTC 100
BSNT_01124___ 101 TCGTCTTAAATCCATATGTAAAACAATGGCTGAAAAAAAACATTTGGATT 150
||||.||||||||.|.|.|||||||||||||||||||.||..|.||||||
RBAM_006960__ 101 TCGTATTAAATCCTTTTTTAAAACAATGGCTGAAAAAGAATGTCTGGATT 150
BSNT_01124___ 151 TATCAG-GACCGCATTGTTTATGTGGGTCATGAACTTCCGAATAGAGCCG 199
|| |.| |||||.|||||.|||||.|||.||||.|||||..||..|||.|
RBAM_006960__ 151 TA-CGGAGACCGAATTGTATATGTTGGTGATGAGCTTCCTGATGCAGCAG 199
BSNT_01124___ 200 AAGAAATTCATACGATTGATTGTGAAGGAAAATACATTGTGCCAGGTTAT 249
|..|.||||||||.||..|||||||||||||||||||||||||||||||.
RBAM_006960__ 200 AGCACATTCATACCATAAATTGTGAAGGAAAATACATTGTGCCAGGTTAC 249
BSNT_01124___ 250 ATTGAACCGCACGCACATCCTTTTCAAATATATAATCCCCAAACACTGGC 299
|||||||||||..|||||||||||||||||||||||||||||||.||.||
RBAM_006960__ 250 ATTGAACCGCATACACATCCTTTTCAAATATATAATCCCCAAACGCTCGC 299
BSNT_01124___ 300 GGAATATGTGTCTCAATACGGAACAACGACATTTGTGAATGATAACTTAT 349
.||||||||||||||||.||||||||||||.|||||.|||||||||||.|
RBAM_006960__ 300 CGAATATGTGTCTCAATTCGGAACAACGACGTTTGTTAATGATAACTTGT 349
BSNT_01124___ 350 TTTTGCTTTTGCAAAGCGGAAAAAAGAAAGCGCTTACGATTTTGAATGAA 399
||||.||||||||.|||||.|||||||||||||||||.||.|||.|.|||
RBAM_006960__ 350 TTTTTCTTTTGCATAGCGGTAAAAAGAAAGCGCTTACTATATTGGAGGAA 399
BSNT_01124___ 400 CTCAAAAAGCAGCCTGTCCAGTATTTTTGGTGGTCACGCTATGACCTCCA 449
||.|||||.|||||.||.||.||.||.||||||||..|.|||||.||.||
RBAM_006960__ 400 CTGAAAAAACAGCCGGTGCAATACTTCTGGTGGTCCAGATATGATCTGCA 449
BSNT_01124___ 450 GACCGAGGTTCTGAACGAGGACCACGTCCTTCCATTTGACGTCAGAAAAC 499
|||.||.||.|||||.|||||.||..|.|||.|.|||||.|||.||||.|
RBAM_006960__ 450 GACTGAAGTGCTGAATGAGGATCAGCTTCTTTCTTTTGATGTCCGAAAGC 499
BSNT_01124___ 500 AGTGGATTGAACATCCGGATGTGATTCAAGGCGGAGAAATGACCGGATGG 549
|.||||||||.||.||||||||.|||||||||||||||.|||||||||||
RBAM_006960__ 500 AATGGATTGAGCACCCGGATGTCATTCAAGGCGGAGAATTGACCGGATGG 549
BSNT_01124___ 550 CCTCGCCTGGTAGATGGTGATGATTTAATGCTCCACTGCATGCAAGCTAC 599
||.|||||..|.||.||.|||||..|.|||||.||.||||||||.||.||
RBAM_006960__ 550 CCGCGCCTCATGGACGGCGATGACCTGATGCTTCATTGCATGCAGGCGAC 599
BSNT_01124___ 600 AAAGAAACAGCGAAAACGCATTGAAGGGCATTTTCCCGGCGCATCTGATA 649
|||.||||.|||.||.||.||.|||||||||||||||||.||.|||||.|
RBAM_006960__ 600 AAAAAAACTGCGCAAGCGGATAGAAGGGCATTTTCCCGGAGCCTCTGAAA 649
BSNT_01124___ 650 AAACGCTTACAAAAATGAAGCTGTTCGGTGCGGATTGTGATCATGAAGCG 699
||||.||.||.||.|||||.||||||||.||.||||..||.||.||.|||
RBAM_006960__ 650 AAACACTGACGAAGATGAAACTGTTCGGAGCTGATTCCGACCACGAGGCG 699
BSNT_01124___ 700 ATGACAGGTGATGAAGTGATGAGAAGGCTGGAACTGGGCTATTATGTTTC 749
||||..||.|..||.|||||||||.||||.|||.|||||||.||||||||
RBAM_006960__ 700 ATGAATGGCGGCGAGGTGATGAGACGGCTTGAATTGGGCTACTATGTTTC 749
BSNT_01124___ 750 CCTTCGGA-ACTCTTCCATTCGCCCCGATGTAAGAAAAATCTTGCAAGAG 798
.| ||.|| |.||.|||||.|||||.|||.|.||||..||.|||||.||.
RBAM_006960__ 750 GC-TCAGACATTCATCCATCCGCCCTGATTTGAGAACGATTTTGCAGGAT 798
BSNT_01124___ 799 CTGCATGAGAAGGGCTTCCGCTATTATGACCACTTCTTTTACACGACAGA 848
||.|||.|.||.||||||||..|||||||.||.|||||.||||||||.||
RBAM_006960__ 799 CTTCATCAAAAAGGCTTCCGGCATTATGATCATTTCTTCTACACGACGGA 848
BSNT_01124___ 849 TGGCGCAACCCCGAATTTCTATAAAGGCGGCATGACAAACGAGCTGAT-- 896
|||.||.||.|||.||||.|||||||||||||||||.||.||..|.||
RBAM_006960__ 849 TGGAGCGACGCCGCATTTTTATAAAGGCGGCATGACGAATGAATTAATCA 898
BSNT_01124___ 897 ---TCGCATTGCGTTAGAAGAAGGCGTACCTGCAATCGACGCCTACAATA 943
||||.||| ||.|||||.||.||.||.|||||.||||||||||
RBAM_006960__ 899 AAATCGCTTTG-----GAGGAAGGAGTTCCGGCGATCGATGCCTACAATA 943
BSNT_01124___ 944 TGGCATCATTTAATATCGCAAAGTATTACCAAATGGATGATTATTTAGGA 993
||||.||.|||||||||||.||||||||.||.|||||.||.|.|.|.||.
RBAM_006960__ 944 TGGCCTCCTTTAATATCGCGAAGTATTATCAGATGGACGACTTTCTCGGT 993
BSNT_01124___ 994 GTTGTCGGACCGGGCAGACTGGCATCGCTCAACATACTGGAAGCTCCGTT 1043
||.|||||.|||||..|.||.||.||..|.|||||.||.||.|..|||.|
RBAM_006960__ 994 GTGGTCGGTCCGGGACGGCTTGCTTCATTGAACATTCTCGATGACCCGAT 1043
BSNT_01124___ 1044 AAATCCGAATCCCGTGACTGTTCTGTCAAAAGGGACCATTCTGCGTGAAG 1093
.||||||.|.||.||.||.||..|.||.|||||.|.|.|.|||.|.||||
RBAM_006960__ 1044 GAATCCGGACCCGGTCACGGTGATCTCCAAAGGCATCCTGCTGAGGGAAG 1093
BSNT_01124___ 1094 ACGGCTGTGATTTGAAGGCGTTTACAAAGACGGACTGGCACAAAGGCGGT 1143
|||||.|..||.||||.|||||||||.|.|||||.|||.|.||.||||||
RBAM_006960__ 1094 ACGGCCGAAATATGAATGCGTTTACAGAAACGGATTGGAAAAAGGGCGGT 1143
BSNT_01124___ 1144 CTTGTCTCGCTTGAACTTTCATATGATATGACGATGGATGACTTGCAGTT 1193
||||||.|.|||||.||||||||||||||||||||||||||.||.|||||
RBAM_006960__ 1144 CTTGTCCCTCTTGAGCTTTCATATGATATGACGATGGATGATTTACAGTT 1193
BSNT_01124___ 1194 TTCTATGCCGATGGGCGTGAAAATGCGGAATGCGGTTATTATGGAGCCCT 1243
|||.|||||||||||.||||..|||||.||.|||||.|||||||||||.|
RBAM_006960__ 1194 TTCAATGCCGATGGGTGTGACCATGCGCAACGCGGTCATTATGGAGCCGT 1243
BSNT_01124___ 1244 ATATGATTGAGATTGACAATTCGATGGAACAGCTCTCGTTTGACCATGAT 1293
|||||||||.||||||.|||||..|.||.|||||.||.|||||.||||||
RBAM_006960__ 1244 ATATGATTGCGATTGATAATTCTGTTGACCAGCTTTCTTTTGATCATGAT 1293
BSNT_01124___ 1294 GAAAGTTATTTGACGATGCTCGACAGACACGGGAAATGGCGCGTCAATAC 1343
|||.|.|||.|.|||.|.|||||.|..||.||.||||||||.||||||||
RBAM_006960__ 1294 GAATGCTATCTCACGCTTCTCGATAAGCATGGAAAATGGCGGGTCAATAC 1343
BSNT_01124___ 1344 GATGATAAAAGGGTTTGCC--TCAAGCGTGCAGGGATTTGTAAGCTCCTT 1391
.|||.|.|||||.|||||| || |.||||||||.|||||.||.||||.
RBAM_006960__ 1344 AATGCTGAAAGGTTTTGCCGATC--GGGTGCAGGGCTTTGTCAGTTCCTA 1391
BSNT_01124___ 1392 TACGACGACGGGCGACATTGTCGCGATTGGAAAAAATAAAGCGGATATGC 1441
.|||||.||.||.||.|||.||||....|||||||||||||..|||||.|
RBAM_006960__ 1392 CACGACAACCGGAGATATTATCGCTGCCGGAAAAAATAAAGAAGATATCC 1441
BSNT_01124___ 1442 TGCTCGCTTTCGCCCGCATGAAAGAAATCGGAGGAGGAATTGTTTTAGCG 1491
|||||||||||.|.||.||||||||||||||.||.|||||.||..|.||.
RBAM_006960__ 1442 TGCTCGCTTTCTCACGGATGAAAGAAATCGGCGGCGGAATCGTGCTTGCC 1491
BSNT_01124___ 1492 GAGAACAGAAACATTCTGCATGAAATCCCGCTTGCGCTGTGCGGCTGCGC 1541
||.|||.|.||.|||||.|||||.||.||.||.||..|...|||.|..||
RBAM_006960__ 1492 GAAAACGGGAAGATTCTTCATGAGATTCCCCTCGCCTTAAACGGTTCTGC 1541
BSNT_01124___ 1542 CTCTTCGGAAGCGTATGAAGACGTGCTTGAGAAGGAACAAAAGCTGAGAG 1591
.||..||||...|||||||||.|||||||||||.||.|||||.||||| |
RBAM_006960__ 1542 ATCCGCGGAGAAGTATGAAGAAGTGCTTGAGAAAGAGCAAAAACTGAG-G 1590
BSNT_01124___ 1592 ATCTTTTGACTGAAAGA----GGCTA-TGAGTTTTGCGATCCTATCTATA 1636
||.|| .|||.|.|| ||||| .|| ||.||||||||.|||||||
RBAM_006960__ 1591 ATGTT---GCTGGAGGAGCGGGGCTACCGA-TTCTGCGATCCGATCTATA 1636
BSNT_01124___ 1637 CGCTGCTCTTTTTGCAAAGTACGCACCTTCCGTATATACGCATTACGCCA 1686
||||||||||||||||.||.||.|||||.||.|||||.|||||||||||.
RBAM_006960__ 1637 CGCTGCTCTTTTTGCAGAGCACACACCTGCCTTATATCCGCATTACGCCG 1686
BSNT_01124___ 1687 AGAGGAATCTTCGACGTCATGAAAAAAACTGTACTCTTTCCATCGATAAT 1736
||||||||.||.|||||.||||||||||||||||||||||||||||||||
RBAM_006960__ 1687 AGAGGAATATTTGACGTGATGAAAAAAACTGTACTCTTTCCATCGATAAT 1736
BSNT_01124___ 1737 GCGTTAA 1743
|||||||
RBAM_006960__ 1737 GCGTTAA 1743
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