Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01116 and RBAM_006950
See
Amino acid alignment /
Visit
BSNT_01116 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:48
# Commandline: needle
# -asequence dna-align/BSNT_01116___purD.1.9828.seq
# -bsequence dna-align/RBAM_006950___purD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01116___purD-RBAM_006950___purD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01116___purD-RBAM_006950___purD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01116___purD
# 2: RBAM_006950___purD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1287
# Identity: 990/1287 (76.9%)
# Similarity: 990/1287 (76.9%)
# Gaps: 36/1287 ( 2.8%)
# Score: 3764.5
#
#
#=======================================
BSNT_01116___ 1 GTGAATGTATTAATTATCGGCAAAGGCGGAAGAGAACATACGCTGGCGTG 50
|||||||||||.||||||||.||||||||.|||||.|||||..||||.||
RBAM_006950__ 1 GTGAATGTATTGATTATCGGAAAAGGCGGCAGAGAGCATACATTGGCTTG 50
BSNT_01116___ 51 GAAGGCAGCGCAAAGTAGTCTCGTCGAGA--ATGTATTTGCA--GCTCCT 96
|||.||.||||||||....||.||.||.| .|||| || ||.||.
RBAM_006950__ 51 GAAAGCGGCGCAAAGCCCGCTTGTTGACACGGTGTA----CACCGCGCCC 96
BSNT_01116___ 97 GGAAATGACGGCATGGAAGCTTCCGC-ACAGCTTGTAAACATTGAGGAAA 145
|||||||||||.||||.||..|.||| || |||.||.||||||||.||||
RBAM_006950__ 97 GGAAATGACGGTATGGCAGACTGCGCGAC-GCTGGTCAACATTGAAGAAA 145
BSNT_01116___ 146 GCGACCACGCAGGGCTTGTCTCGTTTGCAAAAGAAAACCAGGTCGGCCTA 195
||||.||.||.|..||..|..|||||||.||||||.|.|..|||||.||.
RBAM_006950__ 146 GCGATCATGCCGCACTCATTGCGTTTGCGAAAGAACATCGTGTCGGGCTG 195
BSNT_01116___ 196 ACCATTGTCGGCCCTGAGGTTCCTTTAATTGAAGGTCTGGTGGATGAATT 245
||.|||.|||||||.||.||||||.|.||||||||..|.|..||.||.||
RBAM_006950__ 196 ACGATTATCGGCCCCGAAGTTCCTCTGATTGAAGGGATAGCCGACGAGTT 245
BSNT_01116___ 246 TGAAAAAGCGGGTCTGCGCGTGTTCGGCCCGTC---AAAAGCCGCGGCGA 292
|||||||||.||.||||..||.|||||.||||| |||| |||||.|
RBAM_006950__ 246 TGAAAAAGCCGGACTGCTTGTTTTCGGACCGTCTGAAAAA---GCGGCAA 292
BSNT_01116___ 293 TCATCGAAGGAAGCAAACAGTTCGCTAAGGATTTAATGAAGAAATACGAC 342
||||.|||||.|||||||||||.||.||||||||||||||.|||||||.|
RBAM_006950__ 293 TCATTGAAGGGAGCAAACAGTTTGCCAAGGATTTAATGAAAAAATACGGC 342
BSNT_01116___ 343 ATTCCGACTGCAGAATACGACACGTTTACATCCTTTGATGAGGCGAAGGC 392
||||||||.||.||.||.||.||||||||.||.|||||.||||||||.||
RBAM_006950__ 343 ATTCCGACGGCGGAGTATGAGACGTTTACTTCATTTGAAGAGGCGAAAGC 392
BSNT_01116___ 393 ATATGTGCTGGAAAAAGGTGCTCCGATTGTGATCAAAGCAGATGGACTTG 442
||||||||.|.|||||||.||.||||||||.||.|||||.||.||.||||
RBAM_006950__ 393 ATATGTGCAGCAAAAAGGCGCGCCGATTGTCATTAAAGCGGACGGGCTTG 442
BSNT_01116___ 443 CAGCTGGAAAAGGCGTTACTGTGGCTATGACAGAGGAAGAAGCAATTGCA 492
|.||.||||||||.||.||.||.||.|||||.||.||||||||.||||.|
RBAM_006950__ 443 CCGCCGGAAAAGGTGTCACGGTCGCGATGACGGAAGAAGAAGCGATTGAA 492
BSNT_01116___ 493 TGTTTGCATGACTTTCTTGAAGATGAAAAGTTCGGTGATGCGAGCGCGTC 542
||..||||.||.||||||||.|||||.||.|||||.||.||||||||.||
RBAM_006950__ 493 TGCCTGCACGATTTTCTTGAGGATGAGAAATTCGGGGAGGCGAGCGCATC 542
BSNT_01116___ 543 CGTTGTCATTGAAGAATATCTTTCTGGTGAAGAATTTTCTCTGATGGCCT 592
|||||||||||||||.|..||..|.||.||||||||||||.|.|||||.|
RBAM_006950__ 543 CGTTGTCATTGAAGAGTTCCTCGCCGGCGAAGAATTTTCTTTAATGGCGT 592
BSNT_01116___ 593 TTGTCAAAGGGGAAAAAGTGTATCCAATGGTGATTGCCCAGGATCACAAG 642
||||.||||||||.|..||.|||||.|||||.||.||.||.|||||.||.
RBAM_006950__ 593 TTGTAAAAGGGGAGACCGTCTATCCGATGGTAATCGCTCAAGATCATAAA 642
BSNT_01116___ 643 CGTGCGTTTGACGGAGACAAAGGCCCGAATACGGGCGGAATGGGCGCTTA 692
||.||.||.||.||||||||.||.||||||||||||||||||||.||.||
RBAM_006950__ 643 CGCGCCTTCGATGGAGACAATGGGCCGAATACGGGCGGAATGGGAGCCTA 692
BSNT_01116___ 693 CTCTCCAGTTCCGCAAATTTCGGATGAAACGGTCCGCCATGCTGTAGAAA 742
|||.|||||.|||||.|||||.|||||.|..|||.|....||.||.||||
RBAM_006950__ 693 CTCACCAGTGCCGCACATTTCCGATGATATCGTCAGAAGCGCAGTCGAAA 742
BSNT_01116___ 743 CGATCGTGAAGCCGGCCGCAAAAGCAATGGTACAAGAAGGCCGTTCCTTC 792
||||.|||||||||||.||||||||||||||..||||.||.||.||||||
RBAM_006950__ 743 CGATTGTGAAGCCGGCGGCAAAAGCAATGGTCAAAGAGGGGCGCTCCTTC 792
BSNT_01116___ 793 ACTGGCGTTTTGTACGCTGGATTGATGCTTACTGAAAACGGCTCGAAGGT 842
||.|||||..|||||||.||..||||.||.||.||||||||.||.||.||
RBAM_006950__ 793 ACGGGCGTGCTGTACGCGGGGCTGATTCTGACGGAAAACGGATCAAAAGT 842
BSNT_01116___ 843 CATTGAATTTAATGCCCGTTTCGGCGATCCGGAAACACAGGTCGTGCTTC 892
|||||||||.||.||.||.|||||.|||||||||||||||||.||..|.|
RBAM_006950__ 843 CATTGAATTCAACGCGCGCTTCGGAGATCCGGAAACACAGGTTGTCGTGC 892
BSNT_01116___ 893 CGCGCATGGAATCTGATCTGGTGCAGGTGCTTCTTGATCTTTTAGATGAT 942
||.|.|||||||||||.||..|.||||||||..||||||||.|..||||.
RBAM_006950__ 893 CGAGAATGGAATCTGACCTCATTCAGGTGCTCTTTGATCTTCTGCATGAG 942
BSNT_01116___ 943 AAGGAAGTTGACTTAAGATGGAAGGATACCGCGGCAGTGAGTGTTGTGCT 992
|||||.||||||.||||.|||||||||||.||.||.||.||.||||||||
RBAM_006950__ 943 AAGGATGTTGACCTAAGGTGGAAGGATACGGCCGCCGTCAGCGTTGTGCT 992
BSNT_01116___ 993 TGCATCAGAAGGGTATCCGGAAAGCTACGCAAAAGGCACGCCGATCGGCA 1042
.||.||.|||||.|||||||||.||||.||.||||||||.||||||||||
RBAM_006950__ 993 GGCTTCTGAAGGCTATCCGGAAGGCTATGCGAAAGGCACTCCGATCGGCA 1042
BSNT_01116___ 1043 GCCTTG----CTGCGGAA-ACTGAGCAGGTCGTGGTCTTCCATGCCGGAA 1087
| .||| |.||.||| ||.| |.|||..||.||.||||||||||
RBAM_006950__ 1043 G-TTTGACGTCCGCTGAAGACGG----GATCGCCGTTTTTCATGCCGGAA 1087
BSNT_01116___ 1088 CGAAAGCAGAAGGCGGAGAGTTTGTTACAAACGGGGGGCGCGTCGCCAAT 1137
|||||..|||.||||||.|.||||||||||||||.||.||.|||||||||
RBAM_006950__ 1088 CGAAAAAAGACGGCGGACAATTTGTTACAAACGGCGGCCGGGTCGCCAAT 1137
BSNT_01116___ 1138 GTGACAGCTTTTGATGAATCGTTTGAAGCGGCTAGAGACCGAGTGTACAA 1187
||.||.||.||||.|||..|.|||||||||||.|||||...||||||||.
RBAM_006950__ 1138 GTCACGGCATTTGCTGAGACATTTGAAGCGGCGAGAGATAAAGTGTACAG 1187
BSNT_01116___ 1188 AGCGGTT-----GATGAAATATTCAAACCGGGACTCTTTTTCAGAAAAGA 1232
.||.||| |.|||.| |||||.|||||.||||.|||||..||
RBAM_006950__ 1188 CGCCGTTTCAGGGCTGACA-----AAACCCGGACTGTTTTACAGAAGCGA 1232
BSNT_01116___ 1233 TATTGGGGCACGCGCTTTAAAGGCTGCCCAAAAATAA 1269
.||.||.||.||.||..|.||.||..|.||...||||
RBAM_006950__ 1233 CATCGGCGCCCGTGCGCTGAAAGCATCGCAGCGATAA 1269
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.