Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01095 and RBAM_006800

See Amino acid alignment / Visit BSNT_01095 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:47
# Commandline: needle
#    -asequence dna-align/BSNT_01095___yebC.1.9828.seq
#    -bsequence dna-align/RBAM_006800___yebC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01095___yebC-RBAM_006800___yebC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01095___yebC-RBAM_006800___yebC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01095___yebC
# 2: RBAM_006800___yebC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity:     561/849 (66.1%)
# Similarity:   561/849 (66.1%)
# Gaps:         111/849 (13.1%)
# Score: 1756.5
# 
#
#=======================================

BSNT_01095___      1 ATGACGGAAGAAAGAAAAGAAACGTTTGAAGAAGAAATTAACCAGAGTGA     50
                     ||||||||||||||||||||||||||.||||||||||  |||        
RBAM_006800__      1 ATGACGGAAGAAAGAAAAGAAACGTTGGAAGAAGAAA--AAC--------     40

BSNT_01095___     51 AAGAAT-AGATG-CAGATGAAGAACCGCTATCGAGAATGTCCAGAAAGGC     98
                      ||.|| ||..| |.||||||||||||||.|||||||||||||||||.||
RBAM_006800__     41 -AGCATCAGGGGACTGATGAAGAACCGCTGTCGAGAATGTCCAGAAATGC     89

BSNT_01095___     99 GAGCCG---GCAAAGCAAGCAGAAGCAAAAACAAAAACAGAAACCGCGCC    145
                     |.|.||   .|||   |||||.|||.|||||.|.|   ||.|||.|||||
RBAM_006800__     90 GGGACGTTATCAA---AAGCAAAAGAAAAAAGATA---AGGAACGGCGCC    133

BSNT_01095___    146 AGGAACGCGGTGAATCAACTGTTAAAGACAAGCTTGCGTCTGTTTGGGCA    195
                     .||..| |||        ||.|||..||.||.||.||.||||..|||||.
RBAM_006800__    134 CGGCTC-CGG--------CTTTTACGGAAAAACTCGCTTCTGCATGGGCC    174

BSNT_01095___    196 GCCATCAACAGATATTGCGGTTTTGCGTTCT-CG-ATTTTAAAATCACCG    243
                     ||..||||..|.||||||.||||.|||  || || |||||.|.|||||||
RBAM_006800__    175 GCGGTCAAACGTTATTGCCGTTTCGCG--CTGCGCATTTTGACATCACCG    222

BSNT_01095___    244 GCGAAAACTGTCGT-----AACGGATGGTTTTTCTCATTATAAGTACGGT    288
                     |.|||   .|||||     ||  ||.||.|||||.|..|.|||.||.|.|
RBAM_006800__    223 GTGAA---GGTCGTTGGGGAA--GACGGCTTTTCCCGCTTTAAATATGCT    267

BSNT_01095___    289 CTGATTTCAATGCTTATATTCAGTATCATTTTTTCAATTGGGAATTGGTT    338
                     ||.||||||||||||.|||||||||||.||||.|||||.||.||||||||
RBAM_006800__    268 CTTATTTCAATGCTTGTATTCAGTATCTTTTTCTCAATCGGAAATTGGTT    317

BSNT_01095___    339 TCAGTTAAAGGCAAGCTGGAATCGGCCGCTCGGTTTCGGAGAACGCCATC    388
                     ||||.|.|.|||||||..|.|..||||.|||||.|.|||.||.||.||||
RBAM_006800__    318 TCAGCTGAGGGCAAGCCAGCAAAGGCCTCTCGGATACGGGGAGCGGCATC    367

BSNT_01095___    389 ATGCTTTCTATGACGGGTTTTTAGTTGTTCTTGTGTATTTGCTGATATTT    438
                     ||.|.||.|.||||||.|||...||||||||.||||||..|||..|.|||
RBAM_006800__    368 ATACGTTTTTTGACGGCTTTACCGTTGTTCTCGTGTATACGCTCGTCTTT    417

BSNT_01095___    439 TT---------CGCGGTAATGGTCTTTGCTATATGGGC-TGTCTCCCGCT    478
                     ||         .||||....|||||          ||| |||.||.||||
RBAM_006800__    418 TTTGCCGCTGCGGCGGGCGCGGTCT----------GGCTTGTATCACGCT    457

BSNT_01095___    479 ATATGATGAAGCAGAAGGTGACGTTCAGAGAAGCGGCTGCCGTATTGGGT    528
                     ||||||||||.|||||..|.|||.|..|.||.|||||.||     .|||.
RBAM_006800__    458 ATATGATGAAACAGAAAATCACGATGCGGGATGCGGCCGC-----GGGGG    502

BSNT_01095___    529 TC--ATTGCTT---GTACCGGTAATTGCTGT------TTCAATCCTTTGG    567
                     ||  ||.||||   ||.|||      |||||      .||.|||.|.|||
RBAM_006800__    503 TCGGATCGCTTTTGGTTCCG------GCTGTCGCCTGCTCTATCGTGTGG    546

BSNT_01095___    568 CTGATCTTTGCGATCGTGAATATCCCAATGCTGACAGTACTGTTTACGGT    617
                     .||||.||.|||||..|||||.|.||..|..|.||.||..|.|||||||.
RBAM_006800__    547 ATGATTTTCGCGATATTGAATCTGCCGGTCATCACCGTGGTATTTACGGC    596

BSNT_01095___    618 GCTGATCTTGTTT---TCCATCTTTTTTATC----ATCGCGCTGTATGTA    660
                     |||||.|||||||   .||..|       ||    ||.|.||.||.|||.
RBAM_006800__    597 GCTGACCTTGTTTCTGGCCGCC-------TCGGCGATGGTGCAGTTTGTG    639

BSNT_01095___    661 CAGCGTGTGTACCAGGCGGCACAAGA---TGCACCAATTGATTATATCTA    707
                     |||..|.|.|||.|..||||..||.|   |||..|   |||....||.||
RBAM_006800__    640 CAGATTCTATACAAATCGGCTGAAAAGCCTGCGGC---TGACGTGATGTA    686

BSNT_01095___    708 TTGTGTATTT--GCAGTGGTTGCGATAGCGCTGCTGTTTACGGCAGTGAC    755
                       .|||||||  ||.|.|||....||...|||..|.||||||||.|||||
RBAM_006800__    687 --CTGTATTTCCGCGGCGGTCATCATCATGCTCATTTTTACGGCTGTGAC    734

BSNT_01095___    756 TTGGCCGTTTATTTCTGAATATTTTACGGCGTCGCTGATTCCGCTTTAA    804
                     .||||||.|.|||||.||.||.|||||.||.||||||||.||..|.|||
RBAM_006800__    735 ATGGCCGCTCATTTCAGAGTACTTTACTGCTTCGCTGATCCCTTTATAA    783


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01095 and RBAM_006800

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
