Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01088 and RBAM_006740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_01088.1.9828.seq
# -bsequence dna-align/RBAM_006740___yeaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01088-RBAM_006740___yeaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01088-RBAM_006740___yeaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01088
# 2: RBAM_006740___yeaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1350
# Identity: 796/1350 (59.0%)
# Similarity: 796/1350 (59.0%)
# Gaps: 318/1350 (23.6%)
# Score: 2155.0
#
#
#=======================================
BSNT_01088 1 ATGAATAAGAA-ATGGCAATGGCTCGTATATGGTTGGAAGCTGATTATAT 49
||||..||||| || |||.|||||..|||||||.|||||||||.||||.|
RBAM_006740__ 1 ATGAGAAAGAAGAT-GCATTGGCTTCTATATGGCTGGAAGCTGCTTATGT 49
BSNT_01088 50 TAACTTTATTGACGGCTGCTGTTTTTTCTTATGCGATGTTTCAGGGCGGC 99
|..|..||.|||||||.|||||.|||||||||||.||||||||||||||.
RBAM_006740__ 50 TGGCCGTACTGACGGCGGCTGTCTTTTCTTATGCCATGTTTCAGGGCGGA 99
BSNT_01088 100 TTTGTCAGCTGGTTTTTGTTTTACACGTTTCTCCCTTTTGTCTTGTATGC 149
|||||.|||||||||||.|||||..|||||.|.||.|||..|.|.||.||
RBAM_006740__ 100 TTTGTGAGCTGGTTTTTATTTTATGCGTTTTTGCCATTTACCGTTTACGC 149
BSNT_01088 150 CGGGCTGTTGGCCTTATATCCGCTCCGTTCTTTTCAGGCTTCAAGGCAAA 199
|||||||.|.||..|.||.|||||.||..|.|||||||
RBAM_006740__ 150 CGGGCTGGTCGCTGTGTACCCGCTGCGGGCGTTTCAGG------------ 187
BSNT_01088 200 TGG----------------------ATAAAACACAATTGCATGCGGGGGA 227
||| .|.||.|.|| ||.||
RBAM_006740__ 188 TGGCGCGTGACGTGTCCTCCGCCCAGTTAACCTCA----------GGCGA 227
BSNT_01088 228 CAGGCTGGGCGTAACGGTTACGCTGAGAAGAAAGCTGCCATTTCCCCTGA 277
|||||||...||.||..|.|.|||||..||....|||||.|||||.||||
RBAM_006740__ 228 CAGGCTGTCTGTCACCATCAGGCTGACGAGGCGCCTGCCGTTTCCGCTGA 277
BSNT_01088 278 TGTATATGGTGATTGAAGAT-TGCCTGCCAGAA------GGTATCGAGTC 320
..||||||||.||||||||| || .||||.||| ||
RBAM_006740__ 278 CATATATGGTCATTGAAGATGTG-ATGCCGGAAACGCTTGG--------- 317
BSNT_01088 321 ATTAAATCGAGACGGAGCCGCGGCCAAACGGCTCGTTTTTCCTTGGTTT- 369
||||| ||.||.| .||.||||.||||||.|||||.||||||
RBAM_006740__ 318 -------CGAGA-GGCGCAG-TGCGAAACAGCTCGTGTTTCCGTGGTTTC 358
BSNT_01088 370 AAACGGAGCATGACGATGTCGTATGAATTAGCT----CGGGTACCGCGCG 415
|||.|.||| |||||.|....|||| |||| |.|||.|||||||
RBAM_006740__ 359 AAAGGAAGC-TGACGTTACAATATG----AGCTGCCGCAGGTGCCGCGCG 403
BSNT_01088 416 GAGAGCATCACTTTCATTCTGTCAGGGTGCGAACCGGGGATGTTCT-TGG 464
||||||||||.||.|||.|..|.||.|||||.||.||.|||||||| .||
RBAM_006740__ 404 GAGAGCATCATTTACATACGATAAGAGTGCGCACGGGAGATGTTCTCGGG 453
BSNT_01088 465 CTTGATT-GAAAAAACTACAT--TTTTTGAGCTGGA--TGATACCCTGTT 509
||| || ||.||.||..|.| |||| |.|.| .|||| |.|||
RBAM_006740__ 454 CTT--TTGGACAAGACGGCGTCGTTTT----CCGTAACGGATA--CGGTT 495
BSNT_01088 510 -TGTTTATCCATTCTATCAGCGT-------TTTTC-CTATCAGGTGAATG 550
||.||.||| |.|||| |.||| ||||.||..|.|
RBAM_006740__ 496 CTGGTTTTCC-------CGGCGTACGGGTCTGTTCACTATAAGCCGCA-- 536
BSNT_01088 551 AGAGGCATCAG--GAAGACGG------TGTAAGCGGTTCTTCTCCTATTC 592
.|..|||||.| |||||.|| ||...||| ||||..|||
RBAM_006740__ 537 GGCCGCATCCGGAGAAGAGGGTACGGCTGCCGGCG------CTCCGTTTC 580
BSNT_01088 593 ATCAGCACCATTCCTCAGTCGCAGCAAGTGTGCGGAATTATCAGCCGGGA 642
|....||||..|||.||.|.||.||.||.||..|.|||||.||||||||.
RBAM_006740__ 581 AGGTACACCGCTCCGCAATGGCTGCGAGCGTCAGAAATTACCAGCCGGGC 630
BSNT_01088 643 GACCGGTTTGCTGCGTTAGATTGGAAGACTTCTGCACGGCGGAGCCAGCT 692
|||||||||.|.||..|.||.|||||.||.||.||.|||||.|...||||
RBAM_006740__ 631 GACCGGTTTTCCGCACTTGACTGGAAAACATCAGCGCGGCGAAATGAGCT 680
BSNT_01088 693 GATGACGAAGGAATTTGAGCCTTCTCGCAGCAAA-----AATCTGTTTCT 737
|||||||||||||||||| |.|||.|||.| |||.||.||||
RBAM_006740__ 681 GATGACGAAGGAATTTGA-----CCCGCTGCAGAGTGTGAATATGATTCT 725
BSNT_01088 738 GCTGATGGA-------CCGTTTTTCCTCTGACGCATTCGAAGAGGTCGTT 780
.||..|||| ||| |||.| .|||||
RBAM_006740__ 726 CCTTTTGGACTGCAGGCCG----TCCCC----------------ATCGTT 755
BSNT_01088 781 T-------CAGTGACAGCTTCG--ATTCTTTATTCTGTTTTAAAAAACGG 821
| |.||..|||||||| ||.| |||.||| |.||||
RBAM_006740__ 756 TGAAGCCGCGGTATCAGCTTCGGCATCC------CTGCTTT---ACACGG 796
BSNT_01088 822 CGC-------GGGCGCTGGC-CTGG----CTTCCATCGGGAAG-GAAAAA 858
||| ||||.||..| |.|| .||.|||.|||.|| ||....
RBAM_006740__ 797 CGCTTGTGAAGGGCTCTCCCGCAGGATTTATTTCATTGGGGAGCGACCGG 846
BSNT_01088 859 AACAT-TTTCCCTATTCAGGAAGGG-GATCAGCATTTTAAGCACATGCTT 906
|.|.| |||||| .||.||.|||| ||.|.||||||.|...|.|||||.
RBAM_006740__ 847 ACCGTATTTCCC--GTCCGGGAGGGAGACCGGCATTTCAGAAAGATGCTG 894
BSNT_01088 907 CGGCATTTA---GCCATC-GC-TCATTGTGATGCGGCAGACCCGATAAGC 951
|| ||| |.|||| || ||| ||..|||.|| ||||
RBAM_006740__ 895 CG----TTACCTGGCATCAGCTTCA----GAATCGGAAG-------AAGC 929
BSNT_01088 952 CGATATGCA--CGGG----------AAGAGCTGGGAAAGCCATCTGTTCG 989
|| ||||| |||| |||||||||...|.||....||.||
RBAM_006740__ 930 CG--ATGCAGGCGGGCGTTTAGGAAAAGAGCTGGCGGATCCGCGCGTCCG 977
BSNT_01088 990 CCAAGCTGATCAAGTT---GTTGTCACGGGACAGT-TAACGGAAGATATG 1035
|.||||| ||.| || ||.||.||||| |||| |.||.||||
RBAM_006740__ 978 CAAAGCT--TCCA-TTGCCGTCGTGACGGG-CAGTCTTACAGAAG----- 1018
BSNT_01088 1036 CTGCACC-TCGCAGAAATAGGAGG----CGGCCGGG------TTACGGTG 1074
||| ||.| |||.|||..| ||||||.| |.||||||
RBAM_006740__ 1019 ----ACCTTCTC--AAACAGGCTGAGCCCGGCCGTGCTGACATGACGGTG 1062
BSNT_01088 1075 ATACTGGCAAAAGAGAAAG-ATGCTGAGCTCTCTCAAGCTGAAAATGCCA 1123
.|..||||.||||| ||.| ||||.|.|||.|| |..||||
RBAM_006740__ 1063 TTTTTGGCGAAAGA-AACGAATGCCGCGCTTTC----GGAGAAA------ 1101
BSNT_01088 1124 TGATTGAACGCATGATGAAACGC---CAAATCAGAGTTCGGGTCA----- 1165
||||| |||||.| |..||| ||| |.|||
RBAM_006740__ 1102 -----GAACG------GAAACTCGCTCTCATC----TTC-GCTCAAAAAA 1135
BSNT_01088 1166 ----TGAGGGGC---------GGG-----CGAGTTTCGCGTGTTGTTTAG 1197
|.|||.|| ||| ||.||.||.|.||||||||||
RBAM_006740__ 1136 ATATTAAGGTGCAAATGATCAGGGACAAACGGGTGTCCCATGTTGTTTAG 1185
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