Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01083 and RBAM_006710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01083___gabP.1.9828.seq
# -bsequence dna-align/RBAM_006710___gabP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01083___gabP-RBAM_006710___gabP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01083___gabP-RBAM_006710___gabP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01083___gabP
# 2: RBAM_006710___gabP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 1056/1443 (73.2%)
# Similarity: 1056/1443 (73.2%)
# Gaps: 90/1443 ( 6.2%)
# Score: 3881.0
#
#
#=======================================
BSNT_01083___ 1 ATGAACCAGTCTCAATCAGGATTAAAAAAGGAATTAAAGACCCGCCATAT 50
|||||.|||.||.|.|| .|||..|||||.||||||.|||||.|||||
RBAM_006710__ 1 ATGAATCAGCCTAACTC---TTTATCAAAGGGATTAAAAACCCGGCATAT 47
BSNT_01083___ 51 GACAATGATTTCGATTGCCGGTGTAATCGGAGCCGGCCTGTTTGTAGGCA 100
|||.||||||||.||||||||.||.|||||.|||||..|.|||||.||.|
RBAM_006710__ 48 GACTATGATTTCAATTGCCGGCGTGATCGGCGCCGGATTATTTGTCGGAA 97
BSNT_01083___ 101 GCGGTTCAGTGATTCACTCGACCGGTCCGGGTGCCGTTGTTTCTTACGCG 150
||||.|||||.|||||.||.|||||.||.||.||..||||.||.|||||.
RBAM_006710__ 98 GCGGATCAGTCATTCATTCCACCGGACCCGGAGCGATTGTCTCCTACGCT 147
BSNT_01083___ 151 TTAGCCGGATTATTGGTGATTTTTATTATGAGAATGCTCGGTGAGATGTC 200
|||||.||||||||.|||||||||||||||||||||||.||.||.|||||
RBAM_006710__ 148 TTAGCAGGATTATTAGTGATTTTTATTATGAGAATGCTGGGGGAAATGTC 197
BSNT_01083___ 201 TGCCGTAAACCCGACGAGCGGATCGTTTTCTCAATACGCTCACGACGCCA 250
..||||.||||||||.|||||.||.|||||.||.|||||.||.|||||||
RBAM_006710__ 198 CTCCGTCAACCCGACAAGCGGTTCATTTTCACAGTACGCGCATGACGCCA 247
BSNT_01083___ 251 TCGGACCGTGGGCGGGATTTACAATCGGCTGGCTGTACTGGTTTTTCTGG 300
||||.||.|||||.||.|||||.|||||.||||||||.||||||||||||
RBAM_006710__ 248 TCGGTCCTTGGGCCGGTTTTACGATCGGATGGCTGTATTGGTTTTTCTGG 297
BSNT_01083___ 301 GTGATCGTCATAGCGATCGAAGCCATTGCCGGTGCTGGCATTATTCAATA 350
||.||||||||.||.||.|||||||||||.||.||.||.||.||.||.||
RBAM_006710__ 298 GTCATCGTCATTGCCATTGAAGCCATTGCAGGCGCCGGAATCATACAGTA 347
BSNT_01083___ 351 CTGGTTCCATGATATTCCGCTGTGGCTGACAAGTTTGATCTTGACCATTG 400
||||||||..|..||||||.|.||||||||.|||.||.|..|||||.|..
RBAM_006710__ 348 CTGGTTCCCGGGCATTCCGTTATGGCTGACGAGTCTGCTTCTGACCGTGC 397
BSNT_01083___ 401 TGCTCACCCTGACAAACGTCTACTCCGTTAAGTCTTTCGGTGAGTTTGAA 450
||.|.||.|||||.||..|.||.||.|||||.||.|||||.||.||||||
RBAM_006710__ 398 TGTTAACACTGACGAATATTTATTCAGTTAAATCGTTCGGCGAATTTGAA 447
BSNT_01083___ 451 TATTGGTTCTCCCTCATTAAAGTTGTGACTATCATTGCTTTTC-TAATCG 499
||.|||.|.|||.|..|.||.||.|.|||.|||.||| |.||| ||||||
RBAM_006710__ 448 TACTGGCTTTCCTTAGTGAAGGTAGCGACGATCGTTG-TCTTCTTAATCG 496
BSNT_01083___ 500 TTGGTTTCGCCTTTATTTTTGGCTTTGCACCGGGCAGTGAGCCAGTCGGT 549
..||.||.||.||.|||||.||..|.|..||.|||||..|.||.|||||.
RBAM_006710__ 497 CGGGATTTGCGTTCATTTTCGGAATCGTCCCCGGCAGCAAACCGGTCGGG 546
BSNT_01083___ 550 TTTTCGAATCTTACAGGCAAAGGCGGATTTTTCCCGGAGGGCATC--AGC 597
.|....|||||..|.||||..||||||||||||||..|.|| || ||.
RBAM_006710__ 547 CTGGAAAATCTGGCGGGCAGCGGCGGATTTTTCCCTAAAGG--TCCAAGT 594
BSNT_01083___ 598 TCCGTATTGCTCGGCATTGTCGTTGTCATCTTCTCTTTTATGGGAACTGA 647
|||||..||||||||||||||||||||||.||.|||||.||||||.||||
RBAM_006710__ 595 TCCGTTCTGCTCGGCATTGTCGTTGTCATTTTTTCTTTCATGGGATCTGA 644
BSNT_01083___ 648 AATCGTTGCCATTGCAGCAGGGGAAACATCCAACCCGATCGAATCTGTGA 697
||||||.||.||.|||||.||.|||||.||.||.|||.|||||||.||.|
RBAM_006710__ 645 AATCGTCGCAATCGCAGCGGGAGAAACGTCAAATCCGGTCGAATCCGTCA 694
BSNT_01083___ 698 CAAAAGCCACCAGATCCGTTGTATGGCGCATCATCGTCTTTTACGTGGGC 747
||||.||.|||.|.||.||.||.|||||.|||||..|.||||||||.|||
RBAM_006710__ 695 CAAAGGCGACCCGCTCAGTCGTTTGGCGGATCATTATTTTTTACGTCGGC 744
BSNT_01083___ 748 TCAATCGCCATTGTCGTGGCGCTGTTGCCATGGAATTCAGCAAATATTTT 797
||.||.||..||||.||..|.|||.||||.|||.|||||||.||||||||
RBAM_006710__ 745 TCCATTGCGGTTGTGGTCACACTGCTGCCGTGGGATTCAGCCAATATTTT 794
BSNT_01083___ 798 AGAAAGCCCTTTCGTCGCTGTACTTGAG-CATATAGGAGTGCCGGCAGCC 846
.||||||||.|||||.||.|| .||||| |||||.||.||.||.||||||
RBAM_006710__ 795 GGAAAGCCCCTTCGTTGCCGT-TTTGAGCCATATCGGGGTTCCCGCAGCC 843
BSNT_01083___ 847 GCACAGATTATGAACTTTATCGTCCTCACAGCCGTACTCTCTTGCCTGAA 896
||.||.||.|||||.||.||||||||.||||||||.||.||.||||||||
RBAM_006710__ 844 GCTCAAATCATGAATTTCATCGTCCTGACAGCCGTTCTGTCCTGCCTGAA 893
BSNT_01083___ 897 TTCAGG--TTTATACACCACATCCAGAATGCTGTATTCACTTGCAGAAAG 944
.||.|| ||||| ||.||.||..|.||||||||||||||.|||||..|
RBAM_006710__ 894 CTCCGGGCTTTAT--ACGACGTCACGGATGCTGTATTCACTGGCAGAGCG 941
BSNT_01083___ 945 AAACGAAGCGCCGCGCCGTTTTATGAAATTGAGCAAAAAAGGCGTTCCCG 994
|||.|||||||||||.||||||||||||.||||.||||.||||||.||.|
RBAM_006710__ 942 AAATGAAGCGCCGCGGCGTTTTATGAAACTGAGTAAAAGAGGCGTACCGG 991
BSNT_01083___ 995 TACAAGCCATTGTGGCCGGGACATTTTTCTCTTATATCGCGGTCGTAATG 1044
|.|||||||||.|.|||||.||.||||||||.|||||.||.||.||.|||
RBAM_006710__ 992 TTCAAGCCATTATCGCCGGCACCTTTTTCTCCTATATTGCCGTTGTTATG 1041
BSNT_01083___ 1045 AACTATTTTTCACCGGATACCGTCTTTTTATTCTTAGTCAACTCATCAGG 1094
|||||.|||||.||.||..||||.|||||.|||.|.|||||.||||||||
RBAM_006710__ 1042 AACTACTTTTCTCCCGACTCCGTATTTTTGTTCCTGGTCAATTCATCAGG 1091
BSNT_01083___ 1095 CGCAATCGCTTTACTCGTCTATCTTGTCATCGCAGTTTCCCAGCTGAAAA 1144
.||.|||||..|.|||||||||||.||||||||.||.||.||.||||.||
RBAM_006710__ 1092 GGCGATCGCACTGCTCGTCTATCTCGTCATCGCCGTCTCACATCTGAGAA 1141
BSNT_01083___ 1145 TGCGGAAAAAACTCGAAAAAACAAACCCGGAAGCATTGAAGATCAAAATG 1194
||.|.||.|||.|||||...||||||||.|||.|..|.||.|||||||||
RBAM_006710__ 1142 TGAGAAAGAAAATCGAACGGACAAACCCTGAATCTCTTAAAATCAAAATG 1191
BSNT_01083___ 1195 TGGCTCTTCCCTTTCCTAACCTACTTGACCATCCTCGCCATTTGCGGAAT 1244
|||.|||..||.|.|.||||||||.||||.|||.||||||||||||..||
RBAM_006710__ 1192 TGGTTCTATCCGTACTTAACCTACCTGACGATCATCGCCATTTGCGCCAT 1241
BSNT_01083___ 1245 TTTAGTGTCCATGGCGTTTATTGATTCCATGAGAGACGAGCTG-----CT 1289
.||..|.||.|||..||||||...|||.||| ||..||| ||
RBAM_006710__ 1242 CTTGTTATCTATGCTGTTTATCAGTTCAATG-----CGGTCTGAATTTCT 1286
BSNT_01083___ 1290 GCTGACAGGCGTCATCACGGGAATCGTTCTGAT--TTCTTACCT----TG 1333
|||||||||..|.||.|| ||||.| |.|||.||| ||
RBAM_006710__ 1287 GCTGACAGGATTTATTAC---------TCTGCTGGTACTTGCCTCATATG 1327
BSNT_01083___ 1334 TGTTCAG---------AAAACGCAAGGTGAGCG----AGAAAGC--GGCT 1368
|.|||.| |||||..||.|.||||| .|||||| ||.|
RBAM_006710__ 1328 TATTCCGCAAAAAACAAAAACCGAAAGAGAGCGCTTCCGAAAGCCGGGTT 1377
BSNT_01083___ 1369 GC-CAACCCAGTTACACAGCAGCAGCCCGATATCCTGCCTTAA 1410
|| ||| |.|
RBAM_006710__ 1378 GCGCAA-----TAA----------------------------- 1386
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