Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01073 and RBAM_006670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01073___ydjN.1.9828.seq
# -bsequence dna-align/RBAM_006670___ydjN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01073___ydjN-RBAM_006670___ydjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01073___ydjN-RBAM_006670___ydjN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01073___ydjN
# 2: RBAM_006670___ydjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1109
# Identity: 754/1109 (68.0%)
# Similarity: 754/1109 (68.0%)
# Gaps: 124/1109 (11.2%)
# Score: 2378.5
#
#
#=======================================
BSNT_01073___ 1 ATGAAAAAAAGAATC-----ATAT---TATTATTAGCAGTGATAATAGCG 42
||| ||.|||||.| ||.| |.||..|.||.|...|..|.|||
RBAM_006670__ 1 ATG--AAGAAGAAACGATGGATCTGGATGTTGCTGGCCGCCGTTTTGGCG 48
BSNT_01073___ 43 GCAGCTG---CCGCGGGGGTTGCGTTTTA-TG-TTGCAAAGGATAAAGGC 87
||.||.| .||||| .||||||| || || ||||||.|||
RBAM_006670__ 49 GCGGCGGTCATCGCGG-----CCGTTTTACTGATT--AAAGGAAAAA--- 88
BSNT_01073___ 88 CATGAGAAGGC--------TGCTGATGTTTCAGTCAATACCGAAAGCGG- 128
|.||.||| .||.|.|||.||.| ||||
RBAM_006670__ 89 ---GCGACGGCGGCGGGAAAGCCGTTGTCTCCG------------GCGGC 123
BSNT_01073___ 129 --TGATGAGCTGCTGGTTTCAATTACAGATACGGATCTGCTGACAAAGTA 176
|||..|||||||.|||||.||||||||.|..||||||.||||.||.||
RBAM_006670__ 124 CATGACAAGCTGCTTGTTTCCATTACAGACAAAGATCTGATGACGAAATA 173
BSNT_01073___ 177 TTATGAAAATGACAAGGTGATCCATGAGGAGAAGCTGAC--CAGCTATCC 224
|||.||..|.|.|...|||.|..|||||||.|||||..| || |||||
RBAM_006670__ 174 TTACGAGGACGGCCGCGTGCTGTATGAGGAAAAGCTTTCGGCA--TATCC 221
BSNT_01073___ 225 GGCATTTGCCTTGGATCAAAAACAGCAGGTGCTCTATTAT-ACGGGCAAT 273
|||.|||||..|.|||.|....||.|||||||||||||.| .|||| |||
RBAM_006670__ 222 GGCGTTTGCGCTCGATGACGCCCATCAGGTGCTCTATTTTGTCGGG-AAT 270
BSNT_01073___ 274 AATGAACAGAATGAAATGAGGCTTTTTAAACTGGATCTAAAGTCTAATAA 323
|||||.||.|||||.|||.|.||.|.|||.||.|||||.|||.|.||.||
RBAM_006670__ 271 AATGACCAAAATGAGATGCGTCTCTATAAGCTTGATCTGAAGACGAAAAA 320
BSNT_01073___ 324 AAAGACGGTGCTTTATAAAGGCGCGGAGAGTGCGGACAGTTTGTTTTTAT 373
.||||||||||||||||||||..|||..||.||.||||||.|||||||||
RBAM_006670__ 321 GAAGACGGTGCTTTATAAAGGAACGGCAAGCGCTGACAGTCTGTTTTTAT 370
BSNT_01073___ 374 CAAAGGACCGTTC-AAC---CATCTATTTCCGCTTAGGAAAATCGGACGA 419
||||||| || .|| |||.||||||||..|.||||||.||||.|
RBAM_006670__ 371 CAAAGGA----TCTGACGCACATTTATTTCCGTCTCGGAAAAGCGGATG- 415
BSNT_01073___ 420 AAGCAATTTT-CGGATCGCCGCTTTTGATCTGAAGACGAAAAAGTATAAA 468
|||..||||| ||..||||..||||||||.||||.||||||...|||.||
RBAM_006670__ 416 AAGATATTTTCCGTCTCGCATCTTTTGATTTGAAAACGAAACGTTATGAA 465
BSNT_01073___ 469 AATCTTTATCCTGCCGCTAATGATCAGGATGACACCGTCAGCAGCTTCTT 518
|||||.|||||.|||||..||||..|.||.||||..||.|||||||||||
RBAM_006670__ 466 AATCTGTATCCCGCCGCCGATGAGAAAGACGACAGTGTGAGCAGCTTCTT 515
BSNT_01073___ 519 TTATAACCAAA---AAAACGATTCATTTGCATTGCTTCATTATTCTGTAG 565
||||||||..| |||||||| |||||..|.||.||||||||.|||.
RBAM_006670__ 516 TTATAACCGGAGCCAAAACGAT---TTTGCGCTTCTGCATTATTCCGTAA 562
BSNT_01073___ 566 AAGAAGACTA-CAAGAAAACAGATGAAGCAAACGAAAAGGGCATCGACCC 614
||||.||.|| ||| |||||.|||||.|||||.||.|||||.||.|||||
RBAM_006670__ 563 AAGAGGATTATCAA-AAAACGGATGAGGCAAATGAGAAGGGGATTGACCC 611
BSNT_01073___ 615 TGAACCGACAACGATTCATTTTGCGGAAG--GCCGTC-AACATAAATTTA 661
|||||||||.|..||.|..|||||.|.|| ||.|.| ||| |..||.
RBAM_006670__ 612 TGAACCGACGAATATCCGGTTTGCAGCAGGAGCGGGCGAAC---ACCTTC 658
BSNT_01073___ 662 ATGAGCTGAAAAGCCTGAACCAATTTATCAGCGATATTGCTGTTT---CT 708
|.||..|||.||.|||..|.||.|||||||||||..|.||.||.| |.
RBAM_006670__ 659 AGGATTTGACAAACCTTGAGCAGTTTATCAGCGACGTGGCGGTGTCACCG 708
BSNT_01073___ 709 GATGATGATA-AACGTATTTTATTCACATCATATACGCAGAAAGGAACGG 757
||.| ||.| ||| .||.|.||.|||||.|||||.||.|||||.||||
RBAM_006670__ 709 GACG--GAAAGAAC--CTTGTCTTTACATCTTATACACAAAAAGGGACGG 754
BSNT_01073___ 758 AGCAAACCGCTTCTAT---TCAGATGCTCAATGCGGATACGAAAAAGTAT 804
|.||||..||.||.|| ||.|||| ||||...|.||||||||..||
RBAM_006670__ 755 AACAAAAAGCGTCCATCCGTCTGATG---AATGTCAAAACGAAAAAAGAT 801
BSNT_01073___ 805 GAAAGCATCATCTCAAATCAAAAATCATTTAAGCT--GTTAATTGACGCA 852
||||..||.|||||||| |...||..|.|| .||| |.|.|||||.||.
RBAM_006670__ 802 GAAACGATTATCTCAAA-CGGGAAGGACTT-CGCTCCGCTGATTGATGCC 849
BSNT_01073___ 853 CAGCCTCAGTTTTCTAAGGATGGGAAGAACATTTATTTTCTTGCCGAAGC 902
|||||||||||||||||.||.||.|..|.|||||||||..|.||.|||||
RBAM_006670__ 850 CAGCCTCAGTTTTCTAAAGACGGCAGCATCATTTATTTCATGGCGGAAGC 899
BSNT_01073___ 903 CAAGGGGGCTAAAAAGCTGAAGGACGAAACAGGGCGTGAA-GCTAAGGTG 951
.||.||.|||||....||||||||.|||||.||||| ||| ||.|||||.
RBAM_006670__ 900 AAAAGGCGCTAAGCGTCTGAAGGATGAAACGGGGCG-GAATGCGAAGGTC 948
BSNT_01073___ 952 CGGACGATTTATTCCTATAGCCTT-------GAAAATAAGACCTTCAAAA 994
|||||.||||||.|.||| |.|| |||||.| |.|.|||
RBAM_006670__ 949 CGGACCATTTATGCTTAT--CATTTGGATACGAAAAAA-----TGCGAAA 991
BSNT_01073___ 995 AAGTATGGGAAAATCCGAACGGCATCATCAACAGCTTTTCTGTGATTAAC 1044
||||.|||||||||...||||||||.||.|||||.|||||.||.|| |
RBAM_006670__ 992 AAGTCTGGGAAAATGACAACGGCATTATTAACAGTTTTTCCGTCAT---C 1038
BSNT_01073___ 1045 TAA------ 1047
.||
RBAM_006670__ 1039 CAATCATGA 1047
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