Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03929 and RBAM_006640

See Amino acid alignment / Visit BSNT_03929 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_03929___sigV.1.9828.seq
#    -bsequence dna-align/RBAM_006640___sigV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03929___sigV-RBAM_006640___sigV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03929___sigV-RBAM_006640___sigV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03929___sigV
# 2: RBAM_006640___sigV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 503
# Identity:     411/503 (81.7%)
# Similarity:   411/503 (81.7%)
# Gaps:           7/503 ( 1.4%)
# Score: 1673.5
# 
#
#=======================================

BSNT_03929___      1 ATGAAGAAAAAAC-AAACAACAAAAGCGTTGCTTGTCACATGCATAACTG     49
                     ||||||    ||| |||||.|.|||||||.||||||.||.||||||||||
RBAM_006640__      1 ATGAAG----AACGAAACAGCCAAAGCGTCGCTTGTGACGTGCATAACTG     46

BSNT_03929___     50 ACCATAAGCAAGATTTCTACAGGTTGGCTTTCAGTTATGTGAAAAATCAA     99
                     |.|..|||.||||.||.|||.||.||||.|.||||||.|| |||.|.|||
RBAM_006640__     47 AGCGCAAGGAAGACTTTTACCGGCTGGCGTACAGTTACGT-AAAGAACAA     95

BSNT_03929___    100 -GATGACGCATTAGATATTGTTCAGGAATCGATAAAAAAAGCGCTGAGCT    148
                      ||||||||.||||||||||||||||||||.||..||||||||||||..|
RBAM_006640__     96 GGATGACGCGTTAGATATTGTTCAGGAATCAATTCAAAAAGCGCTGACAT    145

BSNT_03929___    149 CAGTTGAAACGGTCAGGAACCCTGAGACGATAAAAAGCTGGTTTTATAAA    198
                     |.||.|||.|.||||..|||||.||...|||.||||||||||||||||||
RBAM_006640__    146 CGGTCGAATCCGTCAAAAACCCCGATGTGATCAAAAGCTGGTTTTATAAA    195

BSNT_03929___    199 ATTTTAGTGCGGACAGCCATTGATTTTTTGCGCAAACAAAAAAAGATAAG    248
                     |||||||||||.|||||||||||||||.|.||||||||.|||||..|.|.
RBAM_006640__    196 ATTTTAGTGCGCACAGCCATTGATTTTCTCCGCAAACAGAAAAAACTGAA    245

BSNT_03929___    249 AGTGATGGACGACGAAACGATAGAATTTTTAAGCAAAGGAAAGGAAGACC    298
                     ||||||||||||.||||||||.||.|||||||||...|||||||||||.|
RBAM_006640__    246 AGTGATGGACGATGAAACGATCGAGTTTTTAAGCCGCGGAAAGGAAGATC    295

BSNT_03929___    299 ATTACAAGGATACTGATCTCTATGAAGCGCTTGACGAATTGCCGTACCGC    348
                     |.|||||.||.||.|||||..|.|||||||||||.||..|||||.|.|..
RBAM_006640__    296 ACTACAAAGACACAGATCTTCACGAAGCGCTTGATGACCTGCCGCATCAA    345

BSNT_03929___    349 TATAAAACCATTATTATTTTACGTTTTTTTGAAGACCTCAAATTAGAAGA    398
                     ||||||||||||||.|||.|.|||||.|||||||||||.|||||||||||
RBAM_006640__    346 TATAAAACCATTATCATTCTGCGTTTCTTTGAAGACCTGAAATTAGAAGA    395

BSNT_03929___    399 AATTGCGGAAATTACAGGAGAAAACACGAATACCGTCAAAACGCGCCTAT    448
                     |||.||.||.||.||.||.|||||||..||.|||||||||||.|||||.|
RBAM_006640__    396 AATCGCAGACATCACGGGGGAAAACATCAACACCGTCAAAACACGCCTTT    445

BSNT_03929___    449 ACAGAGCATTGAAGCTGATGCGCATTCAGCTGACGAAGGAGGATCTTTCT    498
                     ||||.|...|||||||.|||||||||||||||||||||||||||||||||
RBAM_006640__    446 ACAGGGGGCTGAAGCTCATGCGCATTCAGCTGACGAAGGAGGATCTTTCT    495

BSNT_03929___    499 TAA    501
                     |||
RBAM_006640__    496 TAA    498


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