Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03930 and RBAM_006630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_03930___yrhM.1.9828.seq
# -bsequence dna-align/RBAM_006630___yrhM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03930___yrhM-RBAM_006630___yrhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03930___yrhM-RBAM_006630___yrhM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03930___yrhM
# 2: RBAM_006630___yrhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 867
# Identity: 670/867 (77.3%)
# Similarity: 670/867 (77.3%)
# Gaps: 15/867 ( 1.7%)
# Score: 2576.5
#
#
#=======================================
BSNT_03930___ 1 ATGGATAAGAGATTACAGCAATTAAGAGAAGAATATAAAAATGTTCCGAT 50
|||||.|||||||||.|.||||||||||||||.|||||||.|||.||.||
RBAM_006630__ 1 ATGGAAAAGAGATTAGAACAATTAAGAGAAGAGTATAAAAGTGTGCCCAT 50
BSNT_03930___ 51 TCCTAAAGAATTGGATATCATTGTTGAAAAAGCCCTTCAGCAAGAACCAA 100
||||||.|||.||||.|.||||||.|||||||||||||||||..||||.|
RBAM_006630__ 51 TCCTAAGGAACTGGACAGCATTGTCGAAAAAGCCCTTCAGCAGAAACCGA 100
BSNT_03930___ 101 AAAAGAAAAGAATCGTCATGTGGCCGACATCAGCAGCAATCGCTGCAGCT 150
|.||.|||.|||||||.||||||||||||||.||.|||.|||||||.||.
RBAM_006630__ 101 AGAAAAAACGAATCGTGATGTGGCCGACATCCGCGGCAGTCGCTGCGGCC 150
BSNT_03930___ 151 ATTTTATTCACTGCGCTTGTTAATATCAACCCTGACGCTGCTCAGGCTAT 200
.|.|||||.||.||..||||.||||||||.||.||.||.||.||.||.||
RBAM_006630__ 151 GTCTTATTTACCGCCGTTGTCAATATCAATCCGGATGCCGCACAAGCCAT 200
BSNT_03930___ 201 GTCAAGGATCCCTGTCATCGGCAAAATCGTCAAAGCGATCACCTTTATTG 250
|||.|..|||||.||||||||||||.|||||.||||.|||||.||.|..|
RBAM_006630__ 201 GTCTAAAATCCCCGTCATCGGCAAAGTCGTCCAAGCCATCACATTCACGG 250
BSNT_03930___ 251 AAATCAAAGAGGAAAAAGACCAATCAAGCATTGATGTCAAAACACCTGCT 300
|.||.||.||.|||||..|||||||||||||||||||.|||||.||.|||
RBAM_006630__ 251 AGATGAAGGAAGAAAAGAACCAATCAAGCATTGATGTGAAAACGCCCGCT 300
BSNT_03930___ 301 TTGTCCGGGCTTTC---TAATAAAGAGCTGGAAAACAGCATTAACCAAAA 347
.|||||||.||||| |.||||| ||.|||.|||||||.||.|...|
RBAM_006630__ 301 CTGTCCGGACTTTCCGATCATAAA---CTCGAAGACAGCATCAATCGGCA 347
BSNT_03930___ 348 ATACTTGAAAGAAAGCCAGCAGCTGTATAAAGAGTTTATACAGTCCACAT 397
.||..|||||||||||.|..||||||||.|.||.|||||..||.|.||.|
RBAM_006630__ 348 TTATATGAAAGAAAGCAAAGAGCTGTATCAGGAATTTATGAAGGCGACCT 397
BSNT_03930___ 398 CCAAAAACAAAAAAGGGCATCTCAGCATCTACAGTGATTACGAGACGGTC 447
|.||||.|||||||||.||.|||||.||.|||||.|||||.||.||.||.
RBAM_006630__ 398 CAAAAAGCAAAAAAGGCCACCTCAGTATTTACAGCGATTATGAAACCGTT 447
BSNT_03930___ 448 ACAGACACGCCAGATTTACTCTCTATCCGGCGCAATATTGAAAAAACACA 497
||.|||||..|.|||||..||||.|||||.||..||||.|||||||||||
RBAM_006630__ 448 ACTGACACAGCGGATTTGATCTCAATCCGCCGTGATATCGAAAAAACACA 497
BSNT_03930___ 498 AGCATCTTCCTACACACAAAGCCGTTATATTACAATTGACAAAAAGAATG 547
|||.||.||.||.||.|||||||||||.||.||.|||||.||||||||||
RBAM_006630__ 498 AGCTTCATCTTATACGCAAAGCCGTTACATCACGATTGATAAAAAGAATG 547
BSNT_03930___ 548 ATATTTTACTTACATTAAAAAGCTTATTCAAAGATGAGCGCTATATTAAA 597
|.....|.|||||.|||||.||.|||||.||||||||.||.|||||||||
RBAM_006630__ 548 AGGCCGTGCTTACGTTAAAGAGTTTATTTAAAGATGACCGTTATATTAAA 597
BSNT_03930___ 598 GTCATCAGTCAAAATATTAGAGAGCAAATGAAACAGCAAATGAAGGAAGA 647
||||||||..|||||||||.|||.|||||||||.|.||.|||||.|||||
RBAM_006630__ 598 GTCATCAGCGAAAATATTAAAGAACAAATGAAAAAACAGATGAAAGAAGA 647
BSNT_03930___ 648 TCCAAATAAAATATATTGGCTCACTGACGAAGATG------CAGAACCGT 691
|||.|||||||||||.|||.|| ||.||.|||| |.||.||.|
RBAM_006630__ 648 TCCGAATAAAATATACTGGGTC---GAAGATGATGATATGACGGAGCCTT 694
BSNT_03930___ 692 TCAAAACGATTCTTCCTGATCAGACGTTTTACATTACTGAAGACCATAAA 741
|.|||.|.||.|...|.||.||||..|||||.|||||.||..|.||.|||
RBAM_006630__ 695 TTAAAGCCATCCGCGCCGACCAGAATTTTTATATTACAGATAAGCACAAA 744
BSNT_03930___ 742 CTTGTGATCTCATTTGACGAATATGAAGTCGCCCCCGGCTATATGGGCGT 791
|||||.||.|||||||||||||||||||..||.|||||.|||||||||||
RBAM_006630__ 745 CTTGTTATTTCATTTGACGAATATGAAGCGGCACCCGGATATATGGGCGT 794
BSNT_03930___ 792 TACCGAGTTTACAATTCCAACAAGCGTCATTTCAAACTTGCTCGTGGGAG 841
|||.|||||.|||||.||.||...||||||.||.||..||||.||.||||
RBAM_006630__ 795 TACAGAGTTCACAATACCGACCTCCGTCATCTCCAAGCTGCTTGTCGGAG 844
BSNT_03930___ 842 AACGTTATATTCGATAA 858
|.||.||.||..|||||
RBAM_006630__ 845 ACCGCTACATCAGATAA 861
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