Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01064 and RBAM_006600

See Amino acid alignment / Visit BSNT_01064 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:44
# Commandline: needle
#    -asequence dna-align/BSNT_01064___ydjH.1.9828.seq
#    -bsequence dna-align/RBAM_006600___ydjH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01064___ydjH-RBAM_006600___ydjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01064___ydjH-RBAM_006600___ydjH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01064___ydjH
# 2: RBAM_006600___ydjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     533/814 (65.5%)
# Similarity:   533/814 (65.5%)
# Gaps:         101/814 (12.4%)
# Score: 1571.5
# 
#
#=======================================

BSNT_01064___      1 ATGCGGGGATTTTTAGGGAAAGCG---ATCTT-TG--------TTGTGCT     38
                     |||...|.||...||...||||||   .|||| ||        ||.|.||
RBAM_006600__      1 ATGAAAGTATCGATAAAAAAAGCGTGTCTCTTCTGCTTCGTCCTTTTTCT     50

BSNT_01064___     39 G--GCTGTCTTCATTATGGTGCCTT---TACTGGGGATCGAAGCGGCAAG     83
                     |  ||||||    ||.||||   ||   |||     ||||  |||.|   
RBAM_006600__     51 GATGCTGTC----TTTTGGT---TTACATAC-----ATCG--GCGTC---     83

BSNT_01064___     84 AGCCTCTGAATCGCAGCAGCATGTGTACGATCGCGCTCATCTATTGTCAA    133
                     .|||.|.|||..|.||||..||||.||.||....||||||.||||..|.|
RBAM_006600__     84 TGCCGCGGAACAGAAGCAATATGTTTATGACAATGCTCATTTATTAACGA    133

BSNT_01064___    134 AAGCGGAGATCGGA-AAACTT---GAATCTCTCTCGGCAG---AGTTGGG    176
                     |.|..|| |.||.| ||||||   |||      |.|||.|   ||.|.||
RBAM_006600__    134 AGGATGA-AACGAAGAAACTTGAGGAA------TTGGCCGGGAAGCTCGG    176

BSNT_01064___    177 TGCAAAGAGAGACACTAATTTCATCATTATTACGACCAAAAGCACAAACG    226
                     .||||||.|..|.||..||||.||||||.||||..|.||..|.||...||
RBAM_006600__    177 GGCAAAGCGCCATACCGATTTTATCATTCTTACCGCAAACGGAACGGGCG    226

BSNT_01064___    227 GTGAAGATATTGCCGACTATACCGGCGATTTTTATGATCGTTA------C    270
                     ||.|.||.||.|...|.||..||||.|||||||||||..||.|      |
RBAM_006600__    227 GTAAGGACATCGAGCAGTACGCCGGTGATTTTTATGACAGTCATTTTAGC    276

BSNT_01064___    271 GGAAAAGGCAGTACAGCCATTTTGACCATTGATATGACAAACAGAGAAGT    320
                     |||      ||.||.||.|||||||||||||||||||.|||..|.|||||
RBAM_006600__    277 GGA------AGCACGGCGATTTTGACCATTGATATGAAAAAGCGGGAAGT    320

BSNT_01064___    321 GTTTATCGCAGGCTTCAAAAAAGCCGA-ACAGTATTTGGACAACAGCAGG    369
                     .||||||.|.||.|..|||||.||.|| || |||||||.|.||||||.||
RBAM_006600__    321 ATTTATCTCCGGATATAAAAAGGCGGAGAC-GTATTTGAATAACAGCCGG    369

BSNT_01064___    370 CTCAATAGCATCAGAAATACGATTTCATCTGATTTATCC---------AA    410
                     ||.||||..||||||||||||||.||.||.|||.|.|||         .|
RBAM_006600__    370 CTGAATACGATCAGAAATACGATCTCGTCAGATATTTCCGCAGGCCATTA    419

BSNT_01064___    411 TGAAAATTATTTTGAAGCTTTTGAGACATATATTCAGCTTTCCTATAAAG    460
                     |||||         |.||.|||.||||.||.||..||.|..|.|||||||
RBAM_006600__    420 TGAAA---------AGGCGTTTCAGACCTACATCAAGTTGGCTTATAAAG    460

BSNT_01064___    461 ATATGGGCATAAAACCGGGA-GTAAACCCTGACAACATATTCT--TTACA    507
                     |||||||.| |||.||.||| |..||..||||||  ||.|.||  |.|||
RBAM_006600__    461 ATATGGGGA-AAAGCCCGGACGACAAGTCTGACA--ATCTGCTGCTCACA    507

BSNT_01064___    508 TGGTGGTTTCAGCTGATTGCTGCCATCGCAGTCGGG---GGAATTGCGGT    554
                     ||||||||||||||.|||..|||   |||||.||.|   |||||.||.||
RBAM_006600__    508 TGGTGGTTTCAGCTCATTATTGC---CGCAGCCGCGGCCGGAATCGCCGT    554

BSNT_01064___    555 TTCAATCATGCTTTATCATGCAGGCGGCAAAGTAACGGTTAATGGAAATA    604
                     ..|..|.|||.|.||..||.|.||||||||.||.||.||.|..||.|..|
RBAM_006600__    555 CACTGTGATGGTGTACAATTCCGGCGGCAAGGTCACCGTCACCGGCAGCA    604

BSNT_01064___    605 CATATATGGATCAGCG-TACGTCTGATGTGATTGA-TCAATACGACACTT    652
                     |.||||||||||| || |||||||||.||| .||| .||..|||||||.|
RBAM_006600__    605 CGTATATGGATCA-CGATACGTCTGAAGTG-CTGAGCCAGCACGACACAT    652

BSNT_01064___    653 ATATTAGAA-CGACTGTAACAAGAGAAAGAAAACCATCAGATAAAGACAG    701
                     ||||..||| |||| ||.||||||||||.|||.|   |.||||||||.|.
RBAM_006600__    653 ATATCCGAACCGAC-GTTACAAGAGAAAAAAAGC---CTGATAAAGATAA    698

BSNT_01064___    702 CGGCAGCGATGGCGGTGTTACGAAAGGCGGCACGTCATACAGTGGAAGCC    751
                     .|.||..||.|||||.||.||||..|||||||||...|||||.||||||.
RBAM_006600__    699 TGACAATGACGGCGGAGTCACGAGGGGCGGCACGAGTTACAGCGGAAGCA    748

BSNT_01064___    752 GGGGCAGTTTTTAA    765
                     .|||.|||||||||
RBAM_006600__    749 AGGGTAGTTTTTAA    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01064 and RBAM_006600

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
