Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01061 and RBAM_006580
See
Amino acid alignment /
Visit
BSNT_01061 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_01061.1.9828.seq
# -bsequence dna-align/RBAM_006580___pspA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01061-RBAM_006580___pspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01061-RBAM_006580___pspA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01061
# 2: RBAM_006580___pspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 698
# Identity: 244/698 (35.0%)
# Similarity: 244/698 (35.0%)
# Gaps: 385/698 (55.2%)
# Score: 851.0
#
#
#=======================================
BSNT_01061 0 -------------------------------------------------- 0
RBAM_006580__ 1 ATGAGTATTTTAGGAAGATTTAAAGACATCATGTCAAGCAATATCAATGC 50
BSNT_01061 0 -------------------------------------------------- 0
RBAM_006580__ 51 GCTGCTGGATAAAGCTGAAAACCCTGAAAAAATGGTTGATCAATATTTGC 100
BSNT_01061 0 -------------------------------------------------- 0
RBAM_006580__ 101 GGAATCTGAACAGTGATTTAGGAAAAGTGAAAGCGGAGACGGCTTCTGTC 150
BSNT_01061 0 -------------------------------------------------- 0
RBAM_006580__ 151 ATGGCTGAGGAACAGCGGGCGAAAAGAACGTTAACAGAATGCCAGGCTGA 200
BSNT_01061 0 -------------------------------------------------- 0
RBAM_006580__ 201 TGCCGAAAAGATGGAAAGTTATGCGATGAAAGCGTTGCAGGCCGGCAATG 250
BSNT_01061 0 -------------------------------------------------- 0
RBAM_006580__ 251 AAGCCGATGCGCGGACATTTTTGGAAAGGAAAGCGGCTGTTGAATCAAGA 300
BSNT_01061 0 -------------------------------------------------- 0
RBAM_006580__ 301 CTGACTGAGCTGCAGACGGCTTATCAGCTCGCTTCTTCCAACGCCTCTCA 350
BSNT_01061 1 ----------ATGCATGACAAATTGGTATCTGACATTGGAGAGCTGGAAG 40
|||||||||||..|.||..||||.||.||||||||.||..
RBAM_006580__ 351 AATGCGCAAAATGCATGACAAGCTTGTCGCTGATATCGGAGAGCTTGAGT 400
BSNT_01061 41 CACGTAAAAATATGATCAAGGCGAAGTGGGCAGTAGCGAAAACGCAAGAA 90
|.||...||||...|||||.|||||||||.|.||.||.||||||||.||.
RBAM_006580__ 401 CGCGCCGAAATGCCATCAAAGCGAAGTGGTCTGTGGCAAAAACGCAGGAG 450
BSNT_01061 91 AGAATGAACAAACTGGACGCTTCTGTTTCAAGTACAAGCCAATCAATGTC 140
||||||||||||.|||...|.|||||.||||.|.|..|||||||.|||.|
RBAM_006580__ 451 AGAATGAACAAATTGGGGTCCTCTGTGTCAAATGCGGGCCAATCGATGAC 500
BSNT_01061 141 TGCATTCGGCCGAATGGAGGACAAAGTAAATAAGGCACTTGATCAGGCCA 190
.||.||||||.|||||||.|||||.||.||..|.||.||||||||.||||
RBAM_006580__ 501 AGCTTTCGGCAGAATGGAAGACAAGGTCAACCAAGCGCTTGATCATGCCA 550
BSNT_01061 191 ATGCAATGGCTGAACTGAACAGCG-CTCCGCAGGATGATATGGCTGATCT 239
||||.||||||||.|||||| ||| |||||.|.||.|||||.|..|||||
RBAM_006580__ 551 ATGCGATGGCTGAGCTGAAC-GCGTCTCCGAAAGACGATATTGACGATCT 599
BSNT_01061 240 GACTGCAAAGTATGACACTGGCGGTTCAAGCCAG-ATTGATGATGAACTT 288
|||.||.||.||||||| || ..||||..||| .|.|||||||||.|.
RBAM_006580__ 600 GACGGCTAAATATGACA---GC-AATCAAAGCAGTGTCGATGATGAATTG 645
BSNT_01061 289 GCGGCG-TTAAAAGC-GAAAATGATGCTCGATAAGTAA---------- 324
|||||| || |||| |||||||.|..|| |||||
RBAM_006580__ 646 GCGGCGCTT--AAGCAGAAAATGCTTTTC----AGTAAAGATCAATAG 687
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.