Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02045 and RBAM_006570

See Amino acid alignment / Visit BSNT_02045 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence dna-align/BSNT_02045___yjdJ.1.9828.seq
#    -bsequence dna-align/RBAM_006570___yjdJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02045___yjdJ-RBAM_006570___yjdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02045___yjdJ-RBAM_006570___yjdJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02045___yjdJ
# 2: RBAM_006570___yjdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 356
# Identity:     223/356 (62.6%)
# Similarity:   223/356 (62.6%)
# Gaps:          64/356 (18.0%)
# Score: 609.5
# 
#
#=======================================

BSNT_02045___      1 GTGAAGGGA-ATATTT---TTAGTTGTTCA--GCTTGGATTTTCT-ATTA     43
                     .||||   | ||.|||   ||| ||||.||  ||  |..|||||| .||.
RBAM_006570__      1 ATGAA---ACATGTTTTTCTTA-TTGTGCAATGC--GCGTTTTCTGTTTT     44

BSNT_02045___     44 TGGTATTTCTGTTTTTAGCTGCTGTTAATTGGTATCAAGGAAGCGAGCTT     93
                     |.|| |||||.|.|.|.||.|||||.|||||||||||.||.||.||||||
RBAM_006570__     45 TTGT-TTTCTTTGTCTTGCCGCTGTCAATTGGTATCAGGGGAGTGAGCTT     93

BSNT_02045___     94 GTTTCAGA-TCGATTTGATTGGAACTATACTGCTAAACTCTCAAAACTGC    142
                     |||||.|| ||| |||||||||||..||||.||.|||.|.|||||.||..
RBAM_006570__     94 GTTTCTGATTCG-TTTGATTGGAATGATACGGCGAAATTTTCAAAGCTTT    142

BSNT_02045___    143 TAAATGGAATTGATGCCGTCAGCAGCCCCAAACAAATTTCACAGCTTGAT    192
                     |.|||||.|..|||.|..|.|..||.||..||||.|||||.|||||||||
RBAM_006570__    143 TGAATGGGACGGATACGATTACAAGTCCTGAACAGATTTCGCAGCTTGAT    192

BSNT_02045___    193 TTTTTCATCTACTCCGCTAAATACTACCCTGTTA-TGAGTGCGTTAATGA    241
                     ||.||..|.||..|.||.|||.|.||.|| |||| ||||.|.|||.||||
RBAM_006570__    193 TTCTTTGTGTATGCTGCGAAACATTATCC-GTTAGTGAGCGGGTTGATGA    241

BSNT_02045___    242 TCATCTCCTTCTTATATGTTCTGGCCGCTCTTTTTTT---ACT-TATATA    287
                     ||  ...|||.||||.|.||          ||||.||   ||| |||.|.
RBAM_006570__    242 TC--GGGCTTTTTATTTATT----------TTTTGTTCTCACTGTATCTG    279

BSNT_02045___    288 CTCAGTCAAATGCAATAAGCAAGAGATT---------CATTTGGACTGCT    328
                     .|| ||.|||   |||          ||         ||..|||   |||
RBAM_006570__    280 GTC-GTGAAA---AAT----------TTCCGCCGGCACAAATGG---GCT    312

BSNT_02045___    329 GA----    330
                     ||    
RBAM_006570__    313 GAATGA    318


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