Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01054 and RBAM_006530

See Amino acid alignment / Visit BSNT_01054 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:43
# Commandline: needle
#    -asequence dna-align/BSNT_01054___gutR.1.9828.seq
#    -bsequence dna-align/RBAM_006530___gutR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01054___gutR-RBAM_006530___gutR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01054___gutR-RBAM_006530___gutR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01054___gutR
# 2: RBAM_006530___gutR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2509
# Identity:    2063/2509 (82.2%)
# Similarity:  2063/2509 (82.2%)
# Gaps:          38/2509 ( 1.5%)
# Score: 8562.0
# 
#
#=======================================

BSNT_01054___      1 ATGGCTGAACTTGAAAACCGAAAACAATTTGCACAACTGCTGGCACCTGG     50
                     ||||||||||||||.|||||.|.||||||||||.|||||||||||||||.
RBAM_006530__      1 ATGGCTGAACTTGAGAACCGGACACAATTTGCAGAACTGCTGGCACCTGC     50

BSNT_01054___     51 CGTCAAAACGCTAAAACTTCATCCTGATTATAAAGTCAGAAGGAAAAAGA    100
                     |||||||.||||.||||.||||||||||||||||||||||||||||||||
RBAM_006530__     51 CGTCAAATCGCTGAAACATCATCCTGATTATAAAGTCAGAAGGAAAAAGA    100

BSNT_01054___    101 ACGAAAAAACAGGACAGTCTTATATAGATAAAATCGCGCTCCAGCTGGGA    150
                     |||||||||||||||||||||||||||||.|||||||.||||...|.||.
RBAM_006530__    101 ACGAAAAAACAGGACAGTCTTATATAGATCAAATCGCACTCCGATTAGGC    150

BSNT_01054___    151 GTCTCCCCAAACACGATCAAAAGCTGGATCGGACAGATGGGGGCAAACTA    200
                     ||.|||.|.||||||||||||||||||||||||||||||||.||||||||
RBAM_006530__    151 GTTTCCTCTAACACGATCAAAAGCTGGATCGGACAGATGGGCGCAAACTA    200

BSNT_01054___    201 CATTCCCGGAAGAATTGAGGACGGAAAACTGTTCGGAATGATCTGGATCA    250
                     ||||||||||.|||||||.||||||||.||||||||.|||||||||||||
RBAM_006530__    201 CATTCCCGGACGAATTGACGACGGAAAGCTGTTCGGCATGATCTGGATCA    250

BSNT_01054___    251 TTCTCGAAAAGACCGACTTCGATATCGAGTGGTTGACCAACCTGCTGGAA    300
                     ||.|.||||||||||||.|.|||...||.|||.|||||..|||.||||||
RBAM_006530__    251 TTATAGAAAAGACCGACATGGATCCTGAATGGCTGACCGGCCTTCTGGAA    300

BSNT_01054___    301 ACCACCACCATCCCAGTCATCAAACCCGCATTGCCTGTATGGGCAGCGTC    350
                     |.||||||.||.||.||.|||||.||||||.||||.||.|||.|.|||||
RBAM_006530__    301 AACACCACGATTCCCGTTATCAAGCCCGCACTGCCCGTTTGGACGGCGTC    350

BSNT_01054___    351 TTGTTTGAAAAAAGCGAAAATACTGCGAAAAGACGGATTATTTGGGGCTC    400
                     ||||.|.||||||||.||||||||.||.||||||.|||.|||.||.||.|
RBAM_006530__    351 TTGTCTAAAAAAAGCAAAAATACTCCGGAAAGACAGATCATTCGGAGCGC    400

BSNT_01054___    401 CGAGTGAAGACGAAATTGAAAATGTAGTAAAACGGCTGTTTCATGACAGA    450
                     |||||||.|||||..|||||||.|.||||||.||||||||||||||||||
RBAM_006530__    401 CGAGTGATGACGATGTTGAAAAAGCAGTAAAGCGGCTGTTTCATGACAGA    450

BSNT_01054___    451 CCCGGCCATGAAACGAATGCGCTTAC-AGAACAGCCTATCACGCATAATT    499
                     ||..||.|.||||||||||||||||| |||| |..|..||||||||||.|
RBAM_006530__    451 CCAAGCTACGAAACGAATGCGCTTACAAGAA-ACTCCGTCACGCATAACT    499

BSNT_01054___    500 TACCCTCACGCTGGTCCGGACGCTTTATCGGACGCAGCTTTGATATGGAA    549
                     ||||.||||||.||.|||||..||||||||||||||.|||||||||||||
RBAM_006530__    500 TACCGTCACGCCGGACCGGAAACTTTATCGGACGCAACTTTGATATGGAA    549

BSNT_01054___    550 GCGATACGGCAATGGATGCTTTCTCCTTCACCAGTCTGTTTAATCACCGG    599
                     ||.||.||||||||||||||.||.|..|||||.||||||||||||||.||
RBAM_006530__    550 GCAATCCGGCAATGGATGCTGTCCCAGTCACCGGTCTGTTTAATCACAGG    599

BSNT_01054___    600 CTGGGCTGGTATGGGTAAAACCACAGTCGCTCTTGAAGCCGCTTATTCC-    648
                     ||||||.||.|||||.|||||.||..|||||||||||||.||.||  || 
RBAM_006530__    600 CTGGGCCGGCATGGGGAAAACAACGATCGCTCTTGAAGCAGCCTA--CCT    647

BSNT_01054___    649 -TGTGTCGACGATACTTCAGATTGGCTGGCGTTCAACAGTATCATTTGGG    697
                      ||||.||.||.|.|..|||||||||.|||.||||||||.|||||.|||.
RBAM_006530__    648 TTGTGCCGGCGGTTCACCAGATTGGCCGGCATTCAACAGCATCATCTGGA    697

BSNT_01054___    698 TCAGCGCTGATTGGAAAGGATTGAGCTTTAGCGATTTTTTAAATACGATC    747
                     |||||||.||.|||||||||||||||||.||||||||||||||.||||||
RBAM_006530__    698 TCAGCGCGGACTGGAAAGGATTGAGCTTCAGCGATTTTTTAAACACGATC    747

BSNT_01054___    748 GCCTATCAGCTCGGACGCACAGAACAAATCGATAAATCAATCAATGAAAA    797
                     ||||||||||||||||||.|||||||||||||.|||||.|||||.|||||
RBAM_006530__    748 GCCTATCAGCTCGGACGCGCAGAACAAATCGACAAATCCATCAACGAAAA    797

BSNT_01054___    798 ACGATTCGTCGTCCGCAATGCGTTAGCCAATTACACAAGAGAAAAACCGA    847
                     |||.||.||||||||||||||.||||||..|.|..|||..||||.|||..
RBAM_006530__    798 ACGGTTTGTCGTCCGCAATGCATTAGCCGCTCATTCAAATGAAACACCAG    847

BSNT_01054___    848 TCCTGCTGATTGTTGACAGCATTGATACCGCAGAACGTGACATTCATGAA    897
                     |..|||||||.||||||.||||||||||.||.||||||.|||||||.|||
RBAM_006530__    848 TATTGCTGATCGTTGACGGCATTGATACAGCGGAACGTAACATTCACGAA    897

BSNT_01054___    898 TTTATCACCAGCCTTCCGCAAGGCGTGAAAGTTCTCCTCACAGCGCGGGA    947
                     |||||||.|.||||||||||||||||.|||||.|||||.||.||.|||||
RBAM_006530__    898 TTTATCATCGGCCTTCCGCAAGGCGTAAAAGTCCTCCTTACGGCACGGGA    947

BSNT_01054___    948 AAACGTAAAGCAAACCTATCGGGAAAGCTTCGGAGAAATGACAGCTATTC    997
                     |||||||||.||.||.||.|||||..||.||||.|||.||.|.||.||.|
RBAM_006530__    948 AAACGTAAAACAGACATACCGGGACGGCCTCGGGGAACTGGCGGCCATCC    997

BSNT_01054___    998 AGCTGAGCGGCCTTGAGCAAACAGATGCCTTGGATTTTTTTCAGCAAGAA   1047
                     |||||.||||||||||.||||||||||||.|.||.|||||.||.||||||
RBAM_006530__    998 AGCTGGGCGGCCTTGAACAAACAGATGCCCTTGAATTTTTCCATCAAGAA   1047

BSNT_01054___   1048 GTGCACCGATGCTTACAAACATGCAACATTCAAAATAAACGGGAAAAGCT   1097
                     ||||||||.||..|.||||||||||||.|.|...|.||||||||||||||
RBAM_006530__   1048 GTGCACCGCTGTCTGCAAACATGCAACCTCCCGCAAAAACGGGAAAAGCT   1097

BSNT_01054___   1098 GGAGCAGCTGTTACATCTATCATCTGACCTGAAAAACGAATTCATTTCAG   1147
                     ||||||||||||..|.||||||.|||||||.||.||.||||||.|.||.|
RBAM_006530__   1098 GGAGCAGCTGTTGGAGCTATCACCTGACCTTAAGAATGAATTCGTCTCGG   1147

BSNT_01054___   1148 CGACTGCCGGAAACCCGAAAGCCATGGCACTCAGCATTGCCTATATGTCA   1197
                     |..|.|||||.||||||||.|||||||||||.|||||.||.||.||||||
RBAM_006530__   1148 CAGCCGCCGGCAACCCGAAGGCCATGGCACTGAGCATCGCTTACATGTCA   1197

BSNT_01054___   1198 GACGATGACATCCCCGCTCAGCAGCTGATTCATGAGCTTGGAAAAGCAGG   1247
                     |||||.||.||||||||||..|||||.|||||.||.|||..|.|||||||
RBAM_006530__   1198 GACGACGATATCCCCGCTCCCCAGCTCATTCAAGAACTTAAACAAGCAGG   1247

BSNT_01054___   1248 CTATTCACTGCTGGAATTGTTTGAATTCCTCTTTGGCCGCACTTGGGATA   1297
                     |||.|||.|..|||||||||||||..|.||||||||||||||.|||||.|
RBAM_006530__   1248 CTACTCATTATTGGAATTGTTTGAGGTTCTCTTTGGCCGCACATGGGACA   1297

BSNT_01054___   1298 GATGCAATGAAGATACGCGAAAGCTATGGCAGACGCTTTGCTTTTTCAGC   1347
                     ||||..|||||||.||.|||||.|||||||||||||||||||||||| ||
RBAM_006530__   1298 GATGTCATGAAGACACACGAAAACTATGGCAGACGCTTTGCTTTTTC-GC   1346

BSNT_01054___   1348 -AAGCCGCCTGATGAAAAAAGCCTGGCGGCAGCAGCCGGATTAGACGCCC   1396
                      |||||.|||||||||||||||.||||...|||.||||||||||||||||
RBAM_006530__   1347 TAAGCCCCCTGATGAAAAAAGCTTGGCTCAAGCGGCCGGATTAGACGCCC   1396

BSNT_01054___   1397 GCCGTTTTCATTACGCTATGGAGCAAATGCGGTCATATGCGCTGATTCAG   1446
                     |.||.|||||||||||.||.||||||||||||||||||||..|.||.|||
RBAM_006530__   1397 GGCGGTTTCATTACGCGATTGAGCAAATGCGGTCATATGCTTTAATACAG   1446

BSNT_01054___   1447 CCGGAACGAAGCCAAGGCAGGACACAATACTTAGCGCACCAAACCGTTGT   1496
                     ||||||||||||..|||.||.|..|||||...|||.||.|||||||||||
RBAM_006530__   1447 CCGGAACGAAGCGCAGGTAGTATTCAATATGCAGCCCATCAAACCGTTGT   1496

BSNT_01054___   1497 CGCTTACGGAGAACAGCACTTGTCCGAACAGCACGAATATGAAAAAGAAG   1546
                     |||||||||||||||||||||.||||||.|.|||||||..|.||||||||
RBAM_006530__   1497 CGCTTACGGAGAACAGCACTTATCCGAAAATCACGAATTAGCAAAAGAAG   1546

BSNT_01054___   1547 CCCGCAATCGCTGGGCGCACTATTATATTGATTATGCCGAAACCCATTTA   1596
                     ||||||..|||||||||||.|||||||||||||||||.||||||||||||
RBAM_006530__   1547 CCCGCAGCCGCTGGGCGCATTATTATATTGATTATGCGGAAACCCATTTA   1596

BSNT_01054___   1597 AAGCGGGAACAGCCCAACTCTATCTATTGGAGCTACCTGCTGGGACGGAA   1646
                     ||.|||||||.||||||.|||.||||||||||||||.|||||||||||||
RBAM_006530__   1597 AAACGGGAACGGCCCAATTCTGTCTATTGGAGCTACTTGCTGGGACGGAA   1646

BSNT_01054___   1647 CTTAGATCAAATGAAACAAGAATGGCCAAACATCTTAAAGGTCATCCAAT   1696
                     .|||||.|||||||||.|.||||||||.||||||.||||.||||||.|||
RBAM_006530__   1647 TTTAGAGCAAATGAAAAAGGAATGGCCGAACATCCTAAAAGTCATCGAAT   1696

BSNT_01054___   1697 GGGCAAGTGAAACCGATCAAAAAGAAATCCTAATCGAACTCATCACCCGC   1746
                     ||.|..|.|||||||..|||.|.||.|||||.||..|||||||||.||||
RBAM_006530__   1697 GGTCGGGCGAAACCGGACAACATGACATCCTGATTAAACTCATCATCCGC   1746

BSNT_01054___   1747 ATCAGCCATTTTCTAAGCAGAATCAACCTGCCCCTGCGAATCGAATACGG   1796
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_006530__   1747 ATCAGCCATTTTCTAAGCAGAATCAACCTGCCCCTGCGAATCGAATACGG   1796

BSNT_01054___   1797 GCGCAAAGCCGCCGACGCCGCCCATCACTTAGGCCAACACACACGAGAAG   1846
                     ....|||||||||||.|||||||.|||.|.||||.|||||||.||.||||
RBAM_006530__   1797 ATTAAAAGCCGCCGATGCCGCCCGTCAATCAGGCGAACACACGCGGGAAG   1846

BSNT_01054___   1847 CGTACTTCCGAATCGACACCTCAGGCTGGGCATTGATGGAAGTCAATGAT   1896
                     |.|||||.||.||||||||..||||||||||..|||||||||||||.|||
RBAM_006530__   1847 CTTACTTTCGGATCGACACGGCAGGCTGGGCGCTGATGGAAGTCAACGAT   1896

BSNT_01054___   1897 TTAGACGGAGCGCTTCA-GCAAATAGAAGCCGGCCTGAAGATTCTGGAAC   1945
                     |.|||||||||.| ||| ||||||||||||||||||||||||.||.||||
RBAM_006530__   1897 TCAGACGGAGCTC-TCAGGCAAATAGAAGCCGGCCTGAAGATACTCGAAC   1945

BSNT_01054___   1946 AATCCGACGCTCACGATGCCCATGATCTAAAGGTTTGGGGACACGCACTC   1995
                     ||||.|.|||.|..|||..|.|.||..|.||.||.||||||..|||.||.
RBAM_006530__   1946 AATCAGGCGCGCCGGATCACGACGACTTGAAAGTATGGGGAACCGCCCTG   1995

BSNT_01054___   1996 AAAGCAAGGCTGTTTTTAAAAGCCGGGCAACAGGAAAAAGC-AAAGACCA   2044
                     .||.|.||||||.|.||||||..|||..|||.||||||||| ..|| |.|
RBAM_006530__   1996 CAATCGAGGCTGCTGTTAAAAATCGGAGAACCGGAAAAAGCGGCAG-CAA   2044

BSNT_01054___   2045 TTTTAAACGCAATCGAAAATCAACCGATTTCCCCTACCATTCAACACAGA   2094
                     |..|..|||.||||.||.||||.||..|.|||||.|..||.|..|||||.
RBAM_006530__   2045 TGCTGGACGGAATCAAAGATCAGCCCGTCTCCCCCATTATCCGGCACAGG   2094

BSNT_01054___   2095 GTTCTATTGGTTCGCGGTGACTTAAGCTTTGCGAGAGGTCATCATGAAGA   2144
                     |||||..||||.|||||.|||.|.||.||.||..|...|||..|.|||||
RBAM_006530__   2095 GTTCTTCTGGTCCGCGGCGACCTGAGTTTCGCCCGCTCTCACTACGAAGA   2144

BSNT_01054___   2145 AGCCATTCA-ATTATACGAAGCGGCAAATGAAATCAGCTCCACGTACGGC   2193
                     ||||| ||| ||||||||||||||||||...||.||||.||.|.||||||
RBAM_006530__   2145 AGCCA-TCACATTATACGAAGCGGCAAACACAACCAGCGCCGCATACGGC   2193

BSNT_01054___   2194 GGCGAAAAAACGATAGAAGCCTATTTCAATCTGGGTGTCGCTTACGTGAA   2243
                     |||||||||||||||||||||||||||||.||.||..|.|||||||||||
RBAM_006530__   2194 GGCGAAAAAACGATAGAAGCCTATTTCAACCTCGGCATGGCTTACGTGAA   2243

BSNT_01054___   2244 ATGTGGTCAATTTGAGAAAGCGGAAGAAGCCTTTGAGCAAATGCTCTATG   2293
                     .||||.||||.|.||.|||||||||.||||||||||.|||||||||||||
RBAM_006530__   2244 GTGTGATCAACTCGAAAAAGCGGAAAAAGCCTTTGAACAAATGCTCTATG   2293

BSNT_01054___   2294 ACAAACATAACGCCAATCAGGTTGAATTGATCTATTATGATTATGGGATG   2343
                     |||||||||||||||||||.|||||.|||||||||||..||||.||.|||
RBAM_006530__   2294 ACAAACATAACGCCAATCAAGTTGAGTTGATCTATTACTATTACGGAATG   2343

BSNT_01054___   2344 GCGCAGTTGTTATATCGTAAAGGAGAGAAAACGAAGGCGAGTGAAGCTAA   2393
                     ||.|||.|.||.|||||||||||||||||||||||.||||..|||.|.||
RBAM_006530__   2344 GCACAGCTCTTGTATCGTAAAGGAGAGAAAACGAAAGCGATGGAATCGAA   2393

BSNT_01054___   2394 TCAGAGGGCGATTCGTTTGATTGATTCGTGGGAGCCTGCGATTGGGATTC   2443
                     |||||..|||||.|||||||||||||||||||||||||.|||||||||||
RBAM_006530__   2394 TCAGAAAGCGATGCGTTTGATTGATTCGTGGGAGCCTGGGATTGGGATTC   2443

BSNT_01054___   2444 GTGGGGAGGTGGAACAACTGGATATGGTGATTAAAGGAAACCGTGAAATT   2493
                     |.||.||||||||.|||.|||||||..|.|||.||               
RBAM_006530__   2444 GGGGTGAGGTGGAGCAAATGGATATTCTCATTTAA---------------   2478

BSNT_01054___   2494 ACATTATAG   2502
                              
RBAM_006530__   2478 ---------   2478


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