Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01054 and RBAM_006530
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_01054___gutR.1.9828.seq
# -bsequence dna-align/RBAM_006530___gutR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01054___gutR-RBAM_006530___gutR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01054___gutR-RBAM_006530___gutR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01054___gutR
# 2: RBAM_006530___gutR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2509
# Identity: 2063/2509 (82.2%)
# Similarity: 2063/2509 (82.2%)
# Gaps: 38/2509 ( 1.5%)
# Score: 8562.0
#
#
#=======================================
BSNT_01054___ 1 ATGGCTGAACTTGAAAACCGAAAACAATTTGCACAACTGCTGGCACCTGG 50
||||||||||||||.|||||.|.||||||||||.|||||||||||||||.
RBAM_006530__ 1 ATGGCTGAACTTGAGAACCGGACACAATTTGCAGAACTGCTGGCACCTGC 50
BSNT_01054___ 51 CGTCAAAACGCTAAAACTTCATCCTGATTATAAAGTCAGAAGGAAAAAGA 100
|||||||.||||.||||.||||||||||||||||||||||||||||||||
RBAM_006530__ 51 CGTCAAATCGCTGAAACATCATCCTGATTATAAAGTCAGAAGGAAAAAGA 100
BSNT_01054___ 101 ACGAAAAAACAGGACAGTCTTATATAGATAAAATCGCGCTCCAGCTGGGA 150
|||||||||||||||||||||||||||||.|||||||.||||...|.||.
RBAM_006530__ 101 ACGAAAAAACAGGACAGTCTTATATAGATCAAATCGCACTCCGATTAGGC 150
BSNT_01054___ 151 GTCTCCCCAAACACGATCAAAAGCTGGATCGGACAGATGGGGGCAAACTA 200
||.|||.|.||||||||||||||||||||||||||||||||.||||||||
RBAM_006530__ 151 GTTTCCTCTAACACGATCAAAAGCTGGATCGGACAGATGGGCGCAAACTA 200
BSNT_01054___ 201 CATTCCCGGAAGAATTGAGGACGGAAAACTGTTCGGAATGATCTGGATCA 250
||||||||||.|||||||.||||||||.||||||||.|||||||||||||
RBAM_006530__ 201 CATTCCCGGACGAATTGACGACGGAAAGCTGTTCGGCATGATCTGGATCA 250
BSNT_01054___ 251 TTCTCGAAAAGACCGACTTCGATATCGAGTGGTTGACCAACCTGCTGGAA 300
||.|.||||||||||||.|.|||...||.|||.|||||..|||.||||||
RBAM_006530__ 251 TTATAGAAAAGACCGACATGGATCCTGAATGGCTGACCGGCCTTCTGGAA 300
BSNT_01054___ 301 ACCACCACCATCCCAGTCATCAAACCCGCATTGCCTGTATGGGCAGCGTC 350
|.||||||.||.||.||.|||||.||||||.||||.||.|||.|.|||||
RBAM_006530__ 301 AACACCACGATTCCCGTTATCAAGCCCGCACTGCCCGTTTGGACGGCGTC 350
BSNT_01054___ 351 TTGTTTGAAAAAAGCGAAAATACTGCGAAAAGACGGATTATTTGGGGCTC 400
||||.|.||||||||.||||||||.||.||||||.|||.|||.||.||.|
RBAM_006530__ 351 TTGTCTAAAAAAAGCAAAAATACTCCGGAAAGACAGATCATTCGGAGCGC 400
BSNT_01054___ 401 CGAGTGAAGACGAAATTGAAAATGTAGTAAAACGGCTGTTTCATGACAGA 450
|||||||.|||||..|||||||.|.||||||.||||||||||||||||||
RBAM_006530__ 401 CGAGTGATGACGATGTTGAAAAAGCAGTAAAGCGGCTGTTTCATGACAGA 450
BSNT_01054___ 451 CCCGGCCATGAAACGAATGCGCTTAC-AGAACAGCCTATCACGCATAATT 499
||..||.|.||||||||||||||||| |||| |..|..||||||||||.|
RBAM_006530__ 451 CCAAGCTACGAAACGAATGCGCTTACAAGAA-ACTCCGTCACGCATAACT 499
BSNT_01054___ 500 TACCCTCACGCTGGTCCGGACGCTTTATCGGACGCAGCTTTGATATGGAA 549
||||.||||||.||.|||||..||||||||||||||.|||||||||||||
RBAM_006530__ 500 TACCGTCACGCCGGACCGGAAACTTTATCGGACGCAACTTTGATATGGAA 549
BSNT_01054___ 550 GCGATACGGCAATGGATGCTTTCTCCTTCACCAGTCTGTTTAATCACCGG 599
||.||.||||||||||||||.||.|..|||||.||||||||||||||.||
RBAM_006530__ 550 GCAATCCGGCAATGGATGCTGTCCCAGTCACCGGTCTGTTTAATCACAGG 599
BSNT_01054___ 600 CTGGGCTGGTATGGGTAAAACCACAGTCGCTCTTGAAGCCGCTTATTCC- 648
||||||.||.|||||.|||||.||..|||||||||||||.||.|| ||
RBAM_006530__ 600 CTGGGCCGGCATGGGGAAAACAACGATCGCTCTTGAAGCAGCCTA--CCT 647
BSNT_01054___ 649 -TGTGTCGACGATACTTCAGATTGGCTGGCGTTCAACAGTATCATTTGGG 697
||||.||.||.|.|..|||||||||.|||.||||||||.|||||.|||.
RBAM_006530__ 648 TTGTGCCGGCGGTTCACCAGATTGGCCGGCATTCAACAGCATCATCTGGA 697
BSNT_01054___ 698 TCAGCGCTGATTGGAAAGGATTGAGCTTTAGCGATTTTTTAAATACGATC 747
|||||||.||.|||||||||||||||||.||||||||||||||.||||||
RBAM_006530__ 698 TCAGCGCGGACTGGAAAGGATTGAGCTTCAGCGATTTTTTAAACACGATC 747
BSNT_01054___ 748 GCCTATCAGCTCGGACGCACAGAACAAATCGATAAATCAATCAATGAAAA 797
||||||||||||||||||.|||||||||||||.|||||.|||||.|||||
RBAM_006530__ 748 GCCTATCAGCTCGGACGCGCAGAACAAATCGACAAATCCATCAACGAAAA 797
BSNT_01054___ 798 ACGATTCGTCGTCCGCAATGCGTTAGCCAATTACACAAGAGAAAAACCGA 847
|||.||.||||||||||||||.||||||..|.|..|||..||||.|||..
RBAM_006530__ 798 ACGGTTTGTCGTCCGCAATGCATTAGCCGCTCATTCAAATGAAACACCAG 847
BSNT_01054___ 848 TCCTGCTGATTGTTGACAGCATTGATACCGCAGAACGTGACATTCATGAA 897
|..|||||||.||||||.||||||||||.||.||||||.|||||||.|||
RBAM_006530__ 848 TATTGCTGATCGTTGACGGCATTGATACAGCGGAACGTAACATTCACGAA 897
BSNT_01054___ 898 TTTATCACCAGCCTTCCGCAAGGCGTGAAAGTTCTCCTCACAGCGCGGGA 947
|||||||.|.||||||||||||||||.|||||.|||||.||.||.|||||
RBAM_006530__ 898 TTTATCATCGGCCTTCCGCAAGGCGTAAAAGTCCTCCTTACGGCACGGGA 947
BSNT_01054___ 948 AAACGTAAAGCAAACCTATCGGGAAAGCTTCGGAGAAATGACAGCTATTC 997
|||||||||.||.||.||.|||||..||.||||.|||.||.|.||.||.|
RBAM_006530__ 948 AAACGTAAAACAGACATACCGGGACGGCCTCGGGGAACTGGCGGCCATCC 997
BSNT_01054___ 998 AGCTGAGCGGCCTTGAGCAAACAGATGCCTTGGATTTTTTTCAGCAAGAA 1047
|||||.||||||||||.||||||||||||.|.||.|||||.||.||||||
RBAM_006530__ 998 AGCTGGGCGGCCTTGAACAAACAGATGCCCTTGAATTTTTCCATCAAGAA 1047
BSNT_01054___ 1048 GTGCACCGATGCTTACAAACATGCAACATTCAAAATAAACGGGAAAAGCT 1097
||||||||.||..|.||||||||||||.|.|...|.||||||||||||||
RBAM_006530__ 1048 GTGCACCGCTGTCTGCAAACATGCAACCTCCCGCAAAAACGGGAAAAGCT 1097
BSNT_01054___ 1098 GGAGCAGCTGTTACATCTATCATCTGACCTGAAAAACGAATTCATTTCAG 1147
||||||||||||..|.||||||.|||||||.||.||.||||||.|.||.|
RBAM_006530__ 1098 GGAGCAGCTGTTGGAGCTATCACCTGACCTTAAGAATGAATTCGTCTCGG 1147
BSNT_01054___ 1148 CGACTGCCGGAAACCCGAAAGCCATGGCACTCAGCATTGCCTATATGTCA 1197
|..|.|||||.||||||||.|||||||||||.|||||.||.||.||||||
RBAM_006530__ 1148 CAGCCGCCGGCAACCCGAAGGCCATGGCACTGAGCATCGCTTACATGTCA 1197
BSNT_01054___ 1198 GACGATGACATCCCCGCTCAGCAGCTGATTCATGAGCTTGGAAAAGCAGG 1247
|||||.||.||||||||||..|||||.|||||.||.|||..|.|||||||
RBAM_006530__ 1198 GACGACGATATCCCCGCTCCCCAGCTCATTCAAGAACTTAAACAAGCAGG 1247
BSNT_01054___ 1248 CTATTCACTGCTGGAATTGTTTGAATTCCTCTTTGGCCGCACTTGGGATA 1297
|||.|||.|..|||||||||||||..|.||||||||||||||.|||||.|
RBAM_006530__ 1248 CTACTCATTATTGGAATTGTTTGAGGTTCTCTTTGGCCGCACATGGGACA 1297
BSNT_01054___ 1298 GATGCAATGAAGATACGCGAAAGCTATGGCAGACGCTTTGCTTTTTCAGC 1347
||||..|||||||.||.|||||.|||||||||||||||||||||||| ||
RBAM_006530__ 1298 GATGTCATGAAGACACACGAAAACTATGGCAGACGCTTTGCTTTTTC-GC 1346
BSNT_01054___ 1348 -AAGCCGCCTGATGAAAAAAGCCTGGCGGCAGCAGCCGGATTAGACGCCC 1396
|||||.|||||||||||||||.||||...|||.||||||||||||||||
RBAM_006530__ 1347 TAAGCCCCCTGATGAAAAAAGCTTGGCTCAAGCGGCCGGATTAGACGCCC 1396
BSNT_01054___ 1397 GCCGTTTTCATTACGCTATGGAGCAAATGCGGTCATATGCGCTGATTCAG 1446
|.||.|||||||||||.||.||||||||||||||||||||..|.||.|||
RBAM_006530__ 1397 GGCGGTTTCATTACGCGATTGAGCAAATGCGGTCATATGCTTTAATACAG 1446
BSNT_01054___ 1447 CCGGAACGAAGCCAAGGCAGGACACAATACTTAGCGCACCAAACCGTTGT 1496
||||||||||||..|||.||.|..|||||...|||.||.|||||||||||
RBAM_006530__ 1447 CCGGAACGAAGCGCAGGTAGTATTCAATATGCAGCCCATCAAACCGTTGT 1496
BSNT_01054___ 1497 CGCTTACGGAGAACAGCACTTGTCCGAACAGCACGAATATGAAAAAGAAG 1546
|||||||||||||||||||||.||||||.|.|||||||..|.||||||||
RBAM_006530__ 1497 CGCTTACGGAGAACAGCACTTATCCGAAAATCACGAATTAGCAAAAGAAG 1546
BSNT_01054___ 1547 CCCGCAATCGCTGGGCGCACTATTATATTGATTATGCCGAAACCCATTTA 1596
||||||..|||||||||||.|||||||||||||||||.||||||||||||
RBAM_006530__ 1547 CCCGCAGCCGCTGGGCGCATTATTATATTGATTATGCGGAAACCCATTTA 1596
BSNT_01054___ 1597 AAGCGGGAACAGCCCAACTCTATCTATTGGAGCTACCTGCTGGGACGGAA 1646
||.|||||||.||||||.|||.||||||||||||||.|||||||||||||
RBAM_006530__ 1597 AAACGGGAACGGCCCAATTCTGTCTATTGGAGCTACTTGCTGGGACGGAA 1646
BSNT_01054___ 1647 CTTAGATCAAATGAAACAAGAATGGCCAAACATCTTAAAGGTCATCCAAT 1696
.|||||.|||||||||.|.||||||||.||||||.||||.||||||.|||
RBAM_006530__ 1647 TTTAGAGCAAATGAAAAAGGAATGGCCGAACATCCTAAAAGTCATCGAAT 1696
BSNT_01054___ 1697 GGGCAAGTGAAACCGATCAAAAAGAAATCCTAATCGAACTCATCACCCGC 1746
||.|..|.|||||||..|||.|.||.|||||.||..|||||||||.||||
RBAM_006530__ 1697 GGTCGGGCGAAACCGGACAACATGACATCCTGATTAAACTCATCATCCGC 1746
BSNT_01054___ 1747 ATCAGCCATTTTCTAAGCAGAATCAACCTGCCCCTGCGAATCGAATACGG 1796
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_006530__ 1747 ATCAGCCATTTTCTAAGCAGAATCAACCTGCCCCTGCGAATCGAATACGG 1796
BSNT_01054___ 1797 GCGCAAAGCCGCCGACGCCGCCCATCACTTAGGCCAACACACACGAGAAG 1846
....|||||||||||.|||||||.|||.|.||||.|||||||.||.||||
RBAM_006530__ 1797 ATTAAAAGCCGCCGATGCCGCCCGTCAATCAGGCGAACACACGCGGGAAG 1846
BSNT_01054___ 1847 CGTACTTCCGAATCGACACCTCAGGCTGGGCATTGATGGAAGTCAATGAT 1896
|.|||||.||.||||||||..||||||||||..|||||||||||||.|||
RBAM_006530__ 1847 CTTACTTTCGGATCGACACGGCAGGCTGGGCGCTGATGGAAGTCAACGAT 1896
BSNT_01054___ 1897 TTAGACGGAGCGCTTCA-GCAAATAGAAGCCGGCCTGAAGATTCTGGAAC 1945
|.|||||||||.| ||| ||||||||||||||||||||||||.||.||||
RBAM_006530__ 1897 TCAGACGGAGCTC-TCAGGCAAATAGAAGCCGGCCTGAAGATACTCGAAC 1945
BSNT_01054___ 1946 AATCCGACGCTCACGATGCCCATGATCTAAAGGTTTGGGGACACGCACTC 1995
||||.|.|||.|..|||..|.|.||..|.||.||.||||||..|||.||.
RBAM_006530__ 1946 AATCAGGCGCGCCGGATCACGACGACTTGAAAGTATGGGGAACCGCCCTG 1995
BSNT_01054___ 1996 AAAGCAAGGCTGTTTTTAAAAGCCGGGCAACAGGAAAAAGC-AAAGACCA 2044
.||.|.||||||.|.||||||..|||..|||.||||||||| ..|| |.|
RBAM_006530__ 1996 CAATCGAGGCTGCTGTTAAAAATCGGAGAACCGGAAAAAGCGGCAG-CAA 2044
BSNT_01054___ 2045 TTTTAAACGCAATCGAAAATCAACCGATTTCCCCTACCATTCAACACAGA 2094
|..|..|||.||||.||.||||.||..|.|||||.|..||.|..|||||.
RBAM_006530__ 2045 TGCTGGACGGAATCAAAGATCAGCCCGTCTCCCCCATTATCCGGCACAGG 2094
BSNT_01054___ 2095 GTTCTATTGGTTCGCGGTGACTTAAGCTTTGCGAGAGGTCATCATGAAGA 2144
|||||..||||.|||||.|||.|.||.||.||..|...|||..|.|||||
RBAM_006530__ 2095 GTTCTTCTGGTCCGCGGCGACCTGAGTTTCGCCCGCTCTCACTACGAAGA 2144
BSNT_01054___ 2145 AGCCATTCA-ATTATACGAAGCGGCAAATGAAATCAGCTCCACGTACGGC 2193
||||| ||| ||||||||||||||||||...||.||||.||.|.||||||
RBAM_006530__ 2145 AGCCA-TCACATTATACGAAGCGGCAAACACAACCAGCGCCGCATACGGC 2193
BSNT_01054___ 2194 GGCGAAAAAACGATAGAAGCCTATTTCAATCTGGGTGTCGCTTACGTGAA 2243
|||||||||||||||||||||||||||||.||.||..|.|||||||||||
RBAM_006530__ 2194 GGCGAAAAAACGATAGAAGCCTATTTCAACCTCGGCATGGCTTACGTGAA 2243
BSNT_01054___ 2244 ATGTGGTCAATTTGAGAAAGCGGAAGAAGCCTTTGAGCAAATGCTCTATG 2293
.||||.||||.|.||.|||||||||.||||||||||.|||||||||||||
RBAM_006530__ 2244 GTGTGATCAACTCGAAAAAGCGGAAAAAGCCTTTGAACAAATGCTCTATG 2293
BSNT_01054___ 2294 ACAAACATAACGCCAATCAGGTTGAATTGATCTATTATGATTATGGGATG 2343
|||||||||||||||||||.|||||.|||||||||||..||||.||.|||
RBAM_006530__ 2294 ACAAACATAACGCCAATCAAGTTGAGTTGATCTATTACTATTACGGAATG 2343
BSNT_01054___ 2344 GCGCAGTTGTTATATCGTAAAGGAGAGAAAACGAAGGCGAGTGAAGCTAA 2393
||.|||.|.||.|||||||||||||||||||||||.||||..|||.|.||
RBAM_006530__ 2344 GCACAGCTCTTGTATCGTAAAGGAGAGAAAACGAAAGCGATGGAATCGAA 2393
BSNT_01054___ 2394 TCAGAGGGCGATTCGTTTGATTGATTCGTGGGAGCCTGCGATTGGGATTC 2443
|||||..|||||.|||||||||||||||||||||||||.|||||||||||
RBAM_006530__ 2394 TCAGAAAGCGATGCGTTTGATTGATTCGTGGGAGCCTGGGATTGGGATTC 2443
BSNT_01054___ 2444 GTGGGGAGGTGGAACAACTGGATATGGTGATTAAAGGAAACCGTGAAATT 2493
|.||.||||||||.|||.|||||||..|.|||.||
RBAM_006530__ 2444 GGGGTGAGGTGGAGCAAATGGATATTCTCATTTAA--------------- 2478
BSNT_01054___ 2494 ACATTATAG 2502
RBAM_006530__ 2478 --------- 2478
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