Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_01045 and RBAM_006460

See Amino acid alignment / Visit BSNT_01045 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:43
# Commandline: needle
#    -asequence dna-align/BSNT_01045___ydiL.1.9828.seq
#    -bsequence dna-align/RBAM_006460___ydiL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01045___ydiL-RBAM_006460___ydiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01045___ydiL-RBAM_006460___ydiL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01045___ydiL
# 2: RBAM_006460___ydiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 766
# Identity:     548/766 (71.5%)
# Similarity:   548/766 (71.5%)
# Gaps:          62/766 ( 8.1%)
# Score: 1885.5
# 
#
#=======================================

BSNT_01045___      1 TTGAGAAAACAGTATTGGTTTATTATTTTGACATATATCATCATGCAGTT     50
                     |||||||||||||||||||.|||.||||||||||||.|.|||||||||.|
RBAM_006460__      1 TTGAGAAAACAGTATTGGTATATCATTTTGACATATGTTATCATGCAGCT     50

BSNT_01045___     51 TTCCGCATTAATCGCGATTCCCTTGTTATTTAAATTCGGTTATGCCGGAG    100
                     |||||||||.||||..|||||.||..|.|..||||||||.|||||.||.|
RBAM_006460__     51 TTCCGCATTGATCGGCATTCCTTTAATGTACAAATTCGGCTATGCGGGCG    100

BSNT_01045___    101 GACAGCCTACAGATGAAAAT------ATGTTGCATGCACAAGG--ATTAT    142
                     |.||.|||||..|||..|||      |||      ||.||.||  .||||
RBAM_006460__    101 GGCACCCTACGAATGCGAATCTCACCATG------GCTCAGGGGATTTAT    144

BSNT_01045___    143 GGTCCGTTATCAGC---TTTATC-GCCTGTCTCGTTGTTGTTCTGCTCAT    188
                       |||||..|.|||   |||||| |||||    .||.|.|||||..|.||
RBAM_006460__    145 --TCCGTCGTAAGCTTTTTTATCTGCCTG----ATTATCGTTCTCTTGAT    188

BSNT_01045___    189 TCTGAGAACCGTTCCGAAAGAAACGCTGCGAAACGGACAGAAGGACTCAA    238
                     |.|||||||||..|||||..|.||..|..|||||||..||||.|..||..
RBAM_006460__    189 TTTGAGAACCGCGCCGAAGCAGACATTAAGAAACGGGAAGAAAGCATCCG    238

BSNT_01045___    239 TCGGACTTTCTATCCTTTGGGCGATAGCCGGTTTTTTCATTGCCC----T    284
                     .|||..|.||..|.||.||||||.|.||.||..|    ||.||.|    |
RBAM_006460__    239 CCGGCATGTCCGTTCTCTGGGCGGTCGCGGGAAT----ATGGCTCGCTTT    284

BSNT_01045___    285 TTTCTCTCAAGGAATAGCAGGCTCTATTGAATATTATGTTTTT------G    328
                     .||.|||||.|||||.||.||....|||||..|.|||||.|||      |
RBAM_006460__    285 ATTTTCTCAGGGAATCGCCGGGATGATTGAGCAGTATGTCTTTCATGTGG    334

BSNT_01045___    329 GCATCGGAAGAGAATCAGAAAATACACAAGCGATTCT--GGATGTCATTC    376
                     |||.|||      .||.|||||.||..||||.|||||  |.|  |.|||.
RBAM_006460__    335 GCAGCGG------TTCCGAAAACACGAAAGCCATTCTCAGCA--TTATTA    376

BSNT_01045___    377 AGGCAGTCCCGCTCATGATTATCGTTTCTTCCATCGTCGGGCCTATATTA    426
                     |.||..|.|||||||||||||||||||||||.|||||||||||.||..|.
RBAM_006460__    377 AAGCCATGCCGCTCATGATTATCGTTTCTTCTATCGTCGGGCCGATTCTT    426

BSNT_01045___    427 GAAGAAATCATCTTCAGAAAAATCATTTTCGGCGCGCTGTACGAAAAAAC    476
                     |||||||||||.|||.|.||.|||||||||||.|...|.||.||||||||
RBAM_006460__    427 GAAGAAATCATTTTCCGGAAGATCATTTTCGGTGTATTATATGAAAAAAC    476

BSNT_01045___    477 GAATTTCTTTTTCGCAGGACTGATCAGCTCGGTTATCTTCGGTATTGTTC    526
                     ||||||||||.||||.|||||||||||.||.||.||.|||||.|||||.|
RBAM_006460__    477 GAATTTCTTTATCGCCGGACTGATCAGTTCCGTCATTTTCGGCATTGTGC    526

BSNT_01045___    527 ACGCTGATTTGAAGCATCTCCTTCTATATACAGCAATGGGCTTTACCTTT    576
                     |....||..|.|.|||.||.||.||.|||||.||.|||||||||||||||
RBAM_006460__    527 ATCAAGACCTCACGCACCTGCTGCTGTATACGGCCATGGGCTTTACCTTT    576

BSNT_01045___    577 GCCTTTTTATATGCG-AGAACAAAACGGA-TATGGGTGCCGATTTTCGCC    624
                     ||.||.||.||||.| || ||.||||||| ||| .||||||||.||||||
RBAM_006460__    577 GCGTTCTTGTATGTGCAG-ACGAAACGGATTAT-TGTGCCGATATTCGCC    624

BSNT_01045___    625 CATTTAATGATGAATA-CATTCGTCGTCATCATGCAGCTTGAGCCTGTTC    673
                     |||.|.|||||||||| |||| |||||..||||||||||.|..||.|..|
RBAM_006460__    625 CATGTCATGATGAATACCATT-GTCGTGGTCATGCAGCTCGGCCCCGCCC    673

BSNT_01045___    674 GTAATTACCTTGAACAGCA----GAGCACACAAATGCAATTGATTATTGG    719
                     ..||.||..||||||||||    |||    |||||||||||.||||||||
RBAM_006460__    674 AAAAATATATTGAACAGCATAGTGAG----CAAATGCAATTAATTATTGG    719

BSNT_01045___    720 AGGATTATTTTTATGA    735
                     ||||||.|||.|||||
RBAM_006460__    720 AGGATTGTTTGTATGA    735


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01045 and RBAM_006460

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
