Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01037 and RBAM_006400
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01037___ydiF.1.9828.seq
# -bsequence dna-align/RBAM_006400___ydiF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01037___ydiF-RBAM_006400___ydiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01037___ydiF-RBAM_006400___ydiF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01037___ydiF
# 2: RBAM_006400___ydiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1966
# Identity: 1530/1966 (77.8%)
# Similarity: 1530/1966 (77.8%)
# Gaps: 74/1966 ( 3.8%)
# Score: 5919.5
#
#
#=======================================
BSNT_01037___ 1 ATGATGATCTTACAAATTAATCAGCTGTCCAAATCGTTTGGTGCTGATAC 50
||||||||||||||||||||||||||.||||||||.|||||.||||||.|
RBAM_006400__ 1 ATGATGATCTTACAAATTAATCAGCTATCCAAATCTTTTGGCGCTGATCC 50
BSNT_01037___ 51 TATTTTAAACAATATAAAGCTGGAAGTCAGAAATCGTGATCGCATCGCCA 100
|||||||||||||||||||||.|||||||||..|||.|||||||||||||
RBAM_006400__ 51 TATTTTAAACAATATAAAGCTTGAAGTCAGATCTCGGGATCGCATCGCCA 100
BSNT_01037___ 101 TTGTAGGAAGAAATGGCGCCGGAAAATCCACGCTCCTTAAAATTATCGCA 150
|.|||||.|||||.||.|||||.|||||.||.||||||||||||||||||
RBAM_006400__ 101 TAGTAGGCAGAAACGGAGCCGGCAAATCAACTCTCCTTAAAATTATCGCA 150
BSNT_01037___ 151 GGCCAGCTTTCGTATGAGAAGGGCGAAATTATTAAACCGAAAGATATT-A 199
||.||.|||||.|||||.|||||.|||.|.||.||||||||||| ||| |
RBAM_006400__ 151 GGTCACCTTTCATATGAAAAGGGTGAATTAATCAAACCGAAAGA-ATTAA 199
BSNT_01037___ 200 CAATGGGATATCTCGCCCAGCATACTGGCTTGGATTCTAAGCTTACCATA 249
|.|||||||||||.||||||||.||.||||||||.||..|||||||||||
RBAM_006400__ 200 CGATGGGATATCTTGCCCAGCACACAGGCTTGGAATCCCAGCTTACCATA 249
BSNT_01037___ 250 AAAGAAGAGCTGCTGACTGTTTTTGACCACTTAAAAGCAATGGAAAAGGA 299
||||||||.|||||||..||||||||..||.|.||||||||||||||.||
RBAM_006400__ 250 AAAGAAGAACTGCTGAGCGTTTTTGATTACCTGAAAGCAATGGAAAAAGA 299
BSNT_01037___ 300 AATGCGGGCTATGGAAGAAAAAATGGCGGCAGCTGCCCCGGGTGAATTAG 349
||||||..||||.||||||||.|||||..|.||.|||||.|..||..|.|
RBAM_006400__ 300 AATGCGCTCTATTGAAGAAAAGATGGCCACGGCCGCCCCCGCGGAGCTTG 349
BSNT_01037___ 350 A-AAGCATCATGAAAACCTACGACCGCCTTCAGCAGGAATTCAAAGATAA 398
| |.|| |.|||||||||||.|||.|.|||||||||||.|||||.|||||
RBAM_006400__ 350 AGACGC-TGATGAAAACCTATGACAGGCTTCAGCAGGATTTCAAGGATAA 398
BSNT_01037___ 399 AGGCGGCTATCAATATGAAGCGGATGTTAGATCTGTGCTGCATGGTCTCG 448
|||||||||||||||||||||||||||..|||||.|.||.||.||.||||
RBAM_006400__ 399 AGGCGGCTATCAATATGAAGCGGATGTCCGATCTATCCTTCACGGCCTCG 448
BSNT_01037___ 449 GCTTCAGCCATTTTGACGATTCTACAC----AGGTTCAAAGCCTCAGCGG 494
|||||.|..|.||||||||||| | |.||.||||||||.|||||
RBAM_006400__ 449 GCTTCGGAAAATTTGACGATTC----CGTGAAAGTGCAAAGCCTGAGCGG 494
BSNT_01037___ 495 AGGCCAGAAAACAAGACTGGCTTTAGGTAAGCTTCTGTTAACACAGCCTG 544
.||.|||||||||||.||.||..|.||.|||||.|||.|.||.|||||||
RBAM_006400__ 495 CGGTCAGAAAACAAGGCTTGCGCTCGGAAAGCTGCTGCTGACCCAGCCTG 544
BSNT_01037___ 545 ATTTGCTCATTCTCGATGAGCCGACAAACCATCTGGATATTGATACGCTT 594
||.||||.|||||.|||||.|||||.||||||||.||.||.|||||||||
RBAM_006400__ 545 ATCTGCTTATTCTGGATGAACCGACGAACCATCTCGACATCGATACGCTT 594
BSNT_01037___ 595 ACCTGGCTTGAGCATTTTTTGCAAGGCTATTCAGGCGCCATCCTCATCGT 644
||.|||||||||||||.|||.||.||.||||||||||||||.||.|||||
RBAM_006400__ 595 ACATGGCTTGAGCATTATTTACAGGGATATTCAGGCGCCATTCTGATCGT 644
BSNT_01037___ 645 ATCGCATGACCGCTACTTTTTGGACAAAGTAGTAAACCAGGTATACGAGG 694
.||.||.|||.|.||||||.|.||.|||||.||.|.|||.||.|||||||
RBAM_006400__ 645 CTCCCACGACAGATACTTTCTTGATAAAGTCGTCAGCCAAGTGTACGAGG 694
BSNT_01037___ 695 TATCAAGAGCAGAAAGCAAAAAGTATCACGGCAACTACAGCGCTTATCTC 744
|.|||.|..|||||||.|||||.||||.|||||||||||||||.|||.|.
RBAM_006400__ 695 TCTCACGGACAGAAAGTAAAAAATATCTCGGCAACTACAGCGCCTATTTA 744
BSNT_01037___ 745 GATCAAAAAGCCGCGCAGTATGAAAAAGATCTGAAAATGTATGAAAAGCA 794
||.||||||||.|.|||||||||.|||||.|||||..||||||||||.||
RBAM_006400__ 745 GAACAAAAAGCTGAGCAGTATGAGAAAGACCTGAAGCTGTATGAAAAACA 794
BSNT_01037___ 795 GCAGGACGAAATTGCAAAGCTGCAGGACTTCGTAGACCGAAATCTGGCGA 844
||||||||||||.||.|||||.||.||.||.||.|||||.||||||||.|
RBAM_006400__ 795 GCAGGACGAAATCGCCAAGCTTCAAGATTTTGTCGACCGCAATCTGGCCA 844
BSNT_01037___ 845 GAGCCTCTACCACCAAAAGGGCGCAAAGCCGCAGAAAGCAGCTGGAGCGA 894
||||.|||||.||.|||||.||.||||||.|.|||||.|||||.||.||.
RBAM_006400__ 845 GAGCTTCTACAACGAAAAGAGCCCAAAGCAGAAGAAAACAGCTTGAACGG 894
BSNT_01037___ 895 ATGGAAGTCATGTCAAAACCGCTTGGCGATGAAAAATCCGCAAACTTTCA 944
|||||.||||||.||||.|||||.||.|||||||||||.||...|||.|.
RBAM_006400__ 895 ATGGACGTCATGGCAAAGCCGCTCGGGGATGAAAAATCAGCCGCCTTCCG 944
BSNT_01037___ 945 TTTTGATATTACAAAACAGAGCGGAAATGAAGTCCTTCGTGTTCATGATC 994
||||||.||||||||||||||||||||.||.|||||.||.||.||.|||.
RBAM_006400__ 945 TTTTGACATTACAAAACAGAGCGGAAACGACGTCCTGCGCGTACAGGATG 994
BSNT_01037___ 995 TCACAATCAGCTATGAAAACCAGCCGCCGCTTTTAACAGAAGTGTCATTC 1044
|..|.|||||||||||...||||||.|||||.||.|.|.|..||.|.|||
RBAM_006400__ 995 TTTCTATCAGCTATGACGGCCAGCCTCCGCTCTTGAAAAACCTGACCTTC 1044
BSNT_01037___ 1045 ATGC-TCACAAGAGGAGAAAGCGCAGCGCTTGTCGGCCCTAACGGAATTG 1093
.|| |.||||||||.||||||||.||.||.|||||.||.||||||||.|
RBAM_006400__ 1045 -GGCATTACAAGAGGCGAAAGCGCCGCCCTCGTCGGACCGAACGGAATCG 1093
BSNT_01037___ 1094 GTAAATCGACATTGCTGAAAAC----ATTAATAGACAC---CCTAAAACC 1136
|.|||||.||.||||||||||| ||.||||.|..| ||..||.||
RBAM_006400__ 1094 GCAAATCAACCTTGCTGAAAACGATTATGAATACAATCAGTCCGGAATCC 1143
BSNT_01037___ 1137 AGATCAAGGAACGATCTCATACGGCTCAAATGTCAGTGTCGGCTATTATG 1186
|||.|||||.|.|||||.||.|||||||...||||||||||.|
RBAM_006400__ 1144 -------GGATCGATCACGTACGGTTCCAATGTCACAATCGGCTATTACG 1186
BSNT_01037___ 1187 ATCAGGAACAGGCAGAGCTGACTTCCTCTAAACGTGTCCTTGATGAGCTG 1236
|||||||.|||||.||.|||||.||.||.|||||.||.||.||.||||||
RBAM_006400__ 1187 ATCAGGAGCAGGCTGAACTGACCTCGTCCAAACGCGTGCTGGACGAGCTG 1236
BSNT_01037___ 1237 TGGGACGAGTACCCCGGGC-TCCCAGAAAAAGAAATCAGAACGTGTCTCG 1285
|||||.||.|| .||||.| |.||.||||||||.|||||.||.||.||||
RBAM_006400__ 1237 TGGGATGAATA-TCCGGACATGCCGGAAAAAGAGATCAGGACATGCCTCG 1285
BSNT_01037___ 1286 GAAATTTCTTATTCTCCGGAGATGATGTGCTGAAACCAGTTCATTCACTG 1335
|.||.|||.|.|||..||||||.|||||.||||||||.||.|.|||.||.
RBAM_006400__ 1286 GCAACTTCCTGTTCAGCGGAGACGATGTCCTGAAACCTGTCCGTTCTCTA 1335
BSNT_01037___ 1336 AGCGGAGGCGAAAAAGCAAGATTGGCTCTAGCTAAGCTGATGCTTCAAAA 1385
|||||.||.||.|||||||||.|.||.||.||.|||||||||||.|||||
RBAM_006400__ 1336 AGCGGCGGTGAGAAAGCAAGAGTCGCGCTTGCCAAGCTGATGCTGCAAAA 1385
BSNT_01037___ 1386 AGCCAACTTTCTCATCCTTGATGAACCGACTAACCATCTGGATTTAGACA 1435
|||.||||||||||||||||||||||||||.|||||.||.|||.|.||||
RBAM_006400__ 1386 AGCAAACTTTCTCATCCTTGATGAACCGACAAACCACCTTGATCTGGACA 1435
BSNT_01037___ 1436 GCAAAGAAGTTCTCGAAAACGCGCTGATTGATTATCCAGGCACACTGTTA 1485
|.||||||||.||.||||||||.|||||.||.||.||.||.|||||||||
RBAM_006400__ 1436 GTAAAGAAGTGCTGGAAAACGCCCTGATCGACTACCCGGGAACACTGTTA 1485
BSNT_01037___ 1486 TTTGTCTCACATGACAGATATTTTATTAACAGAATCGCCACAAGAGTATT 1535
|||||.||.||||||.|.||.|||||||||||.|||||||||||.||..|
RBAM_006400__ 1486 TTTGTATCGCATGACCGCTACTTTATTAACAGGATCGCCACAAGGGTGCT 1535
BSNT_01037___ 1536 GGAGCTTTCT-----TCAAGCCATATAGAGGAGTATCTGGGAGATTACGA 1580
||||||.||| |||.|| |||.||.|||.||||.||.||.||
RBAM_006400__ 1536 GGAGCTGTCTCCGGATCATGC-----AGAAGAATATTTGGGTGACTATGA 1580
BSNT_01037___ 1581 TTATTATACAGAGAAAAAAACAGAGCAGCTTGAA-TTGGAGAAAATAAAT 1629
.|||||.||.|||||||||.|..|||||||.||| |||.|| ||||.||.
RBAM_006400__ 1581 CTATTACACCGAGAAAAAAGCCCAGCAGCTGGAACTTGAAG-AAATGAAG 1629
BSNT_01037___ 1630 CAGCAAGAAGAAACTGAAAAAA------------CGCCAGCTACTGTGAA 1667
|.|||.|| ||||.| ||||.|| |..||.||
RBAM_006400__ 1630 CGGCAGGA--------AAAAGAGCAGGCTCAGCCCGCCGGC-AAGGTCAA 1670
BSNT_01037___ 1668 GTCTGACTCCAAACGTTCCTACGAGGAAGAAAAAGAATGGAAAAAGAAAG 1717
....||..|.|||.|..|.|||||||||||||||||||||||.|||||||
RBAM_006400__ 1671 ACAGGATACGAAAAGAACTTACGAGGAAGAAAAAGAATGGAAGAAGAAAG 1720
BSNT_01037___ 1718 AGCGCCAACGACTCCGTCGGATTGAAGAAATTGAAACCACCGT-TCAAAC 1766
|.||.||.||.||..|.||.|||||||||||||||||..|||| || |.|
RBAM_006400__ 1721 AACGGCAGCGCCTGAGACGCATTGAAGAAATTGAAACGGCCGTCTC-ATC 1769
BSNT_01037___ 1767 CATTGAGGAGAACATCAGCCGCAATGATGAATTGCTATGTGACCCTGAAG 1816
|...||.|||||.||||||..||||||.||..||||.||.||||||||.|
RBAM_006400__ 1770 CGCCGAAGAGAAAATCAGCGCCAATGAGGAGCTGCTGTGCGACCCTGACG 1819
BSNT_01037___ 1817 TCTATCAGGATCATGAAAAAGTACAAGCTATCCATGCAGACAATGAGAAG 1866
|.|||||||||||||||||.|||||..|.||.||.||.||.||| ||||
RBAM_006400__ 1820 TGTATCAGGATCATGAAAAGGTACAGACCATTCACGCGGAGAAT--GAAG 1867
BSNT_01037___ 1867 CTC--AATCAGGAGCTGGA-ATCTCTTTTGTCCGAATGGGAAGAACTATC 1913
||| |||||.|||||.|| |.|| |.||..|.||||||||.|||||.||
RBAM_006400__ 1868 CTCTGAATCAAGAGCTCGAGAACT-TATTAGCAGAATGGGAGGAACTCTC 1916
BSNT_01037___ 1914 CACAGAAGAAGATTAA 1929
|..|||||||.|.
RBAM_006400__ 1917 CTTAGAAGAATAG--- 1929
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