Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01032 and RBAM_006370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01032___ydiC.1.9828.seq
# -bsequence dna-align/RBAM_006370___ydiC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01032___ydiC-RBAM_006370___ydiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01032___ydiC-RBAM_006370___ydiC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01032___ydiC
# 2: RBAM_006370___ydiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity: 511/705 (72.5%)
# Similarity: 511/705 (72.5%)
# Gaps: 30/705 ( 4.3%)
# Score: 1827.0
#
#
#=======================================
BSNT_01032___ 1 ATGACAATATTAGCAATTGATACATCAAATTATACATTGGGCATTGCGCT 50
|||||||||.|.|||||||||||.||||||||.||.|||||....|||||
RBAM_006370__ 1 ATGACAATACTGGCAATTGATACGTCAAATTACACGTTGGGTGCCGCGCT 50
BSNT_01032___ 51 GCTTCGAGAAGACACTGTTATAGCAGAATACATTACATATTTGAAAAAGA 100
..||||.||..|.||.||.||.||.||.||.|||||||||||.|||||||
RBAM_006370__ 51 CGTTCGTGACAAAACGGTGATGGCGGAGTATATTACATATTTAAAAAAGA 100
BSNT_01032___ 101 ACCACTCTGTAAGAGCGATGCCTGCTGTTCATTCATTGCTGAATGATTGT 150
|.||.||.||..|.||.|||||||||||..|||||||||||||.|||||.
RBAM_006370__ 101 ATCATTCCGTGCGGGCCATGCCTGCTGTCAATTCATTGCTGAAGGATTGC 150
BSNT_01032___ 151 GATATGGCACCGCAGGACCTTTCTAAAATTGTCGTTGCAAAAGGCCCAGG 200
|...|..||||||||||||||.|.|||||.|..||.||.|||||.||.||
RBAM_006370__ 151 GGCCTAACACCGCAGGACCTTACGAAAATAGCGGTGGCGAAAGGACCGGG 200
BSNT_01032___ 201 TTCATACACAGGAGTAAGAATAGGTGTGACGTTGGCCAAAACACTTGCCT 250
.||.||||||||.||.|||||.|||||||||.||||.||||||.|.||.|
RBAM_006370__ 201 ATCGTACACAGGTGTCAGAATCGGTGTGACGCTGGCAAAAACATTGGCAT 250
BSNT_01032___ 251 GGTCTTTAGACATTCCAATAAGT----GCTGTATCAAGTCTTGAGACGCT 296
||||..|..|..|||| .|| |||||.||.||.||.|||..|||
RBAM_006370__ 251 GGTCGCTGAAGCTTCC----GGTTTCAGCTGTCTCGAGCCTGGAGGTGCT 296
BSNT_01032___ 297 TGCGGCAAATGGCCGGCATTTTGACGGTCTGATCAGCCCAATCTTTGATG 346
.|||||.||.||.|||||.|||.|.||.||||||.||||..|.|||||||
RBAM_006370__ 297 GGCGGCTAACGGACGGCACTTTCAAGGACTGATCTGCCCGTTATTTGATG 346
BSNT_01032___ 347 CTAGACGGGGACAGGTGTACACAGGTCTGTATCAATATAAAAATGGGCTT 396
|..|.||.||||||||.||.||.||.||.|||.|||||.|..|.||.|..
RBAM_006370__ 347 CCCGGCGCGGACAGGTATATACGGGACTTTATGAATATCAGGACGGCCGA 396
BSNT_01032___ 397 TTAGAGCAA---GTTGTTCCAGATCAAAATGTGATGCTGGCAGATTGGCT 443
||| ||| |||.||||||||||.|||||..|..||.|.||||||||
RBAM_006370__ 397 TTA---CAATCCGTTCTTCCAGATCAGAATGTCCTTTTGACTGATTGGCT 443
BSNT_01032___ 444 GGAGATGCTAAAAGAAAAGGGGCGTCCTGTTTTGTTTTTAGGTCACGACA 493
.|..|||||.||||||||.|.|..|||.|||||.||||||||.|||||.|
RBAM_006370__ 444 CGGCATGCTGAAAGAAAAAGCGTCTCCGGTTTTATTTTTAGGACACGATA 493
BSNT_01032___ 494 CTTCTATTCACAAGCAGATGATAAA--------GGATGTTCTTAGAACAA 535
|..|.|||| ||||..|| |.|||...|.|.|.|..
RBAM_006370__ 494 CAGCCATTC--------ATGAAGAAACCATTCTGCATGAATTGACATCTC 535
BSNT_01032___ 536 AAGGATTCATTGGAACTGCTGCCCAGCATAACCCGCGTCCTTCAGAATTG 585
|||.|.|.||||||||.|||||.||||||||.|||||.||.|||||..||
RBAM_006370__ 536 AAGCAGTGATTGGAACGGCTGCACAGCATAATCCGCGGCCGTCAGAGCTG 585
BSNT_01032___ 586 GCTTTTCTCGGGAAGGAAAAGGAAGCAGCTGATGTTCATGGGCTTGTCCC 635
||.|||.|.||...||||||.||||.|||.|||||.||..|.|||||.||
RBAM_006370__ 586 GCGTTTTTAGGCTTGGAAAAAGAAGAAGCGGATGTCCACAGCCTTGTTCC 635
BSNT_01032___ 636 GGATTACTTGCGGCTGGCAGAAGCTGAAGCGAAATGGATTGAAAGTCAAA 685
||||||.|||||.||||||||.|||||||||||||||||.|||..|||||
RBAM_006370__ 636 GGATTATTTGCGTCTGGCAGAGGCTGAAGCGAAATGGATGGAATCTCAAA 685
BSNT_01032___ 686 AGTAG 690
|.|||
RBAM_006370__ 686 AATAG 690
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