Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01030 and RBAM_006350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01030___thiL.1.9828.seq
# -bsequence dna-align/RBAM_006350___thiL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01030___thiL-RBAM_006350___thiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01030___thiL-RBAM_006350___thiL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01030___thiL
# 2: RBAM_006350___thiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1041
# Identity: 713/1041 (68.5%)
# Similarity: 713/1041 (68.5%)
# Gaps: 126/1041 (12.1%)
# Score: 2361.5
#
#
#=======================================
BSNT_01030___ 1 ATGGATGAATTTGATTTGATACATAGCATTACTCCGCGGACCATTC---- 46
||||||||.|||||||||||.||.||.|||||.||| |||||
RBAM_006350__ 1 ATGGATGAGTTTGATTTGATTCACAGTATTACGCCG-----CATTCGCAT 45
BSNT_01030___ 47 -ACCATTCTTCCGTTGATGTAGGAATAGGGGATGATGCAGCGCTCTACAC 95
|.|||.|||||||.||||||||.||.||.|||||||..|||.|.||.||
RBAM_006350__ 46 TATCATCCTTCCGTCGATGTAGGGATCGGTGATGATGGTGCGGTTTATAC 95
BSNT_01030___ 96 TGCGAAACACGGC--GTTCAGGAAATTGTTTGTGTTGATACTATGGTAGA 143
.|| |.|||..| .|.|||.|||||||.||..|||||||.|||||.||
RBAM_006350__ 96 AGC--ATCACCCCATATGCAGCAAATTGTCTGCCTTGATACAATGGTGGA 143
BSNT_01030___ 144 AGACGTGCACTTCAAATTACACTATTCCTCACCTGAAGATATCGGGTATA 193
..|.||.||.||.||||||.|.||||||||.|||.|.||||||||.||||
RBAM_006350__ 144 GAATGTCCATTTTAAATTAGAGTATTCCTCTCCTCATGATATCGGTTATA 193
BSNT_01030___ 194 AGGCGTTAGCCGTTAATATAAGTGATATTGCCGCGATGGGAGGCATTCCG 243
|||||.|.||.|||||.||.|||||..|.||.||||||||||||||||||
RBAM_006350__ 194 AGGCGCTTGCTGTTAACATTAGTGACGTGGCGGCGATGGGAGGCATTCCG 243
BSNT_01030___ 244 AAATTTTATTTGGTATCACTTGCGGTACCTTC----------AAAATGGA 283
||.|||||||||||.||.||.|||||.||||| |||..|||
RBAM_006350__ 244 AAGTTTTATTTGGTGTCTCTAGCGGTTCCTTCTTGCTGGCAGAAAGCGGA 293
BSNT_01030___ 284 CGGCATCCGAAATCAAGGCGATGTATGAAGGAATGAATGAACTGGCGAAA 333
|| ||.||||.|||||||||||||||...||||||||||||
RBAM_006350__ 294 CG----------TCCAGGCAATGTATGAAGGAATGGCGGAACTGGCGAAA 333
BSNT_01030___ 334 CTATATCAGATGGATCTGATTGGCGGCGATACAGTTTCTACCGCT----G 379
||||||||.||||||.||||.||.||.|||||.||.| ||||| |
RBAM_006350__ 334 CTATATCAAATGGATTTGATCGGGGGAGATACCGTCT---CCGCTTCCGG 380
BSNT_01030___ 380 ACAAATTAGTCG---TTACAGTCACTGTGATCGGTGAAGTTGAAAAGGGA 426
.|| ||.|| ||||.||.|||||.|||||.||||||||.||||..
RBAM_006350__ 381 TCA----AGCCGTAATTACCGTTACTGTCATCGGAGAAGTTGAGAAGGAT 426
BSNT_01030___ 427 CGTGCCTGTTTGCGCAGTCT-GGCAAGACC--GAATGATGTTGTGTTTGT 473
.|.||.|||.||||.|| || ||||||||| || ||||||||||||||
RBAM_006350__ 427 TGCGCTTGTCTGCGAAG-CTCGGCAAGACCCGGA--GATGTTGTGTTTGT 473
BSNT_01030___ 474 AACCGGTGAAATCGGTTCTTCTGCAGCAGGGCTTTCTTTATTGCTGGAAG 523
.||.||.||.||||||||.||.||||||||.||.|||.|.||..|||.||
RBAM_006350__ 474 TACGGGGGATATCGGTTCGTCCGCAGCAGGACTGTCTCTTTTATTGGGAG 523
BSNT_01030___ 524 AGACTAATCCTCAAAACTCATCTG---TGGAAACG---GATTACTTTATC 567
|.|| |.||| |.|||| |..|.||| |||||.||||||
RBAM_006350__ 524 AAAC-ACTCC--------CTTCTGCTTTTCATACGACTGATTATTTTATC 564
BSNT_01030___ 568 CACAGGCATAAACGGCCTGAGCCAAGAG-TAAGCGTCGGCAGATTATGCT 616
|..|..|||||||||||.|..||.|||| |.|| ||||||.|.||.||||
RBAM_006350__ 565 CGAAAACATAAACGGCCCGTTCCGAGAGTTCAG-GTCGGCCGCTTCTGCT 613
BSNT_01030___ 617 CGATTT----TTAAACGGGCAGCTTTAAATGATGTTAGTGACGGATTGGC 662
| | ||.|.||.||.|||.|.||||||.|.||||||||||||||
RBAM_006350__ 614 C----TCAGCTTCAGCGCGCGGCTCTTAATGATATCAGTGACGGATTGGC 659
BSNT_01030___ 663 TAGTGAACTGAACGAGATTGCAGAAGCCAGCTGTGTTTCAATTGAAATTG 712
||||||.|||.|.||.||.||.|..||.||.|..|||.|.||.|||||||
RBAM_006350__ 660 TAGTGAGCTGCATGAAATAGCTGGGGCAAGTTCAGTTACGATAGAAATTG 709
BSNT_01030___ 713 ATGAAAGCA--TGCTTCCAATTCATTCTGATTTGCCTAAGCTTCATCCTA 760
|.||| || |.||.||..|.|||.|.|||||||||.||....||.||.
RBAM_006350__ 710 AAGAA--CAACTTCTGCCGGTGCATCCGGATTTGCCTGAGGCAAATTCTG 757
BSNT_01030___ 761 ACTGGAAAGAATGGGCTTTGTTTGGCGGTGAGGATTTTGAGCTGACAGGG 810
|.||||||.||||||..||.||.||||||||.||||||||..||...||.
RBAM_006350__ 758 AGTGGAAAAAATGGGTGTTATTCGGCGGTGAAGATTTTGAATTGGTTGGA 807
BSNT_01030___ 811 ACGGTTTCAAAAGAGGAGTGGGAAGTGTTGAAGCAGCAGTGC------GC 854
||||||||..|..|.|||| |||..|.|| ||| .|
RBAM_006350__ 808 ACGGTTTCTCAGCAAGAGT-GGATTTCTT----------TGCTAGATTAC 846
BSNT_01030___ 855 AGCACGTCAA------CTTCCCATTACAAAGATTG--GCCATGTC---AG 893
.|||| |||| .||||.|||.|.|||||.| ||..|.|| |.
RBAM_006350__ 847 TGCAC-TCAATCGGGCATTCCGATTGCGAAGATAGGAGCGGTATCTGAAC 895
BSNT_01030___ 894 GGAA-AAAACAAAATCTAAAGTGATCCT---AAAAACA--GATCAAACAT 937
|||| .||.| |.|||.||.| |.|..|| |||||.|.|.
RBAM_006350__ 896 GGAAGGAAGC--------ATGTGTTCTTTTGACAGCCAATGATCAGAGAC 937
BSNT_01030___ 938 CAATGATCTTAGAGAAAAAGGGATATAATCATTTTAAATAA 978
.|||..||.|.||||||||.|||||.|||||||||||||||
RBAM_006350__ 938 AAATCGTCCTTGAGAAAAAAGGATACAATCATTTTAAATAA 978
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