Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01069 and RBAM_006270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_01069___ydjK.1.9828.seq
# -bsequence dna-align/RBAM_006270___ydjK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01069___ydjK-RBAM_006270___ydjK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01069___ydjK-RBAM_006270___ydjK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01069___ydjK
# 2: RBAM_006270___ydjK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1465
# Identity: 1040/1465 (71.0%)
# Similarity: 1040/1465 (71.0%)
# Gaps: 89/1465 ( 6.1%)
# Score: 3536.0
#
#
#=======================================
BSNT_01069___ 1 ATGAATAAACAAGGCAATCA-AATGTCATTTTTACGTACAATTATTTTAG 49
|||||||||.|..|||..|| .|| ||||||||..|.||.||.|||||||
RBAM_006270__ 1 ATGAATAAAAATAGCAGCCAGCAT-TCATTTTTGAGAACCATCATTTTAG 49
BSNT_01069___ 50 TCTCCACTTTCGGCGGGCTTCTTTTTGGCTATGATACCGGTGTGCTCAAT 99
|.||.||.|||||.||.||.|||||.|||||.|||||.|||||..|.|||
RBAM_006270__ 50 TATCGACGTTCGGGGGTCTACTTTTCGGCTACGATACAGGTGTAATTAAT 99
BSNT_01069___ 100 GGAGCTTTGCCGTATATGGGAGAGCCGGATCAGCTTAATCTCAATGCCTT 149
||.||..||||||.|||||..||..|.||.|||||||||||.|..||.||
RBAM_006270__ 100 GGGGCGCTGCCGTTTATGGCGGAAGCTGACCAGCTTAATCTTACCGCTTT 149
BSNT_01069___ 150 CACAGAGGGCCTTGTCACCAGTTCACTTCTTTTTGGAGCGGCACTGGGTG 199
.||.||.||..|.||..|.||.||.||.||.||.||.||.||..|.||.|
RBAM_006270__ 150 GACTGAAGGGATGGTGGCGAGCTCCCTGCTCTTGGGGGCTGCGATCGGAG 199
BSNT_01069___ 200 CTGTGTTTGGCGGCAGGATGTCTGATTTTAACGGCCGCCGCAAAAATATT 249
|.||.||.||.||.||..||||.||.|.|||||||.|.||.||||||||.
RBAM_006270__ 200 CAGTTTTCGGAGGGAGATTGTCGGACTATAACGGCAGACGTAAAAATATC 249
BSNT_01069___ 250 TTGTTCCTCGCTGTTATATTTTTTATTT----CAACGATTGGGTGTACGT 295
.|..||||.||.|| |||.||.||| |.|||.||||.|||||..
RBAM_006270__ 250 CTTATCCTTGCCGT----TTTGTTCTTTGCAGCGACGCTTGGATGTACAC 295
BSNT_01069___ 296 TTGCTCCAAATGTTACGGTCATGATTATTTCCCGTTTTGTGCTTGGTATT 345
|.||.||.||.||..|.||.|||.|.||.|||||||||.||||.||..||
RBAM_006270__ 296 TGGCGCCTAACGTATCTGTTATGGTCATCTCCCGTTTTCTGCTGGGGCTT 345
BSNT_01069___ 346 GCGGTCGGGGGTGCATCCGTAACGGTGCCTGCCTATTTAGCAGAGATGTC 395
||.||||||||.|||||||||||.||.||.||.|||||.||.||.|||||
RBAM_006270__ 346 GCCGTCGGGGGAGCATCCGTAACCGTTCCGGCGTATTTGGCTGAAATGTC 395
BSNT_01069___ 396 TCCTGTGGAAAGCAG-GGGACGGATGGTGACGCAGAACGAATTGATGATT 444
.||.|.|||||||.| |||| |.|||||.||.||.||.||||||||||||
RBAM_006270__ 396 GCCGGCGGAAAGCCGAGGGA-GAATGGTTACCCAAAATGAATTGATGATT 444
BSNT_01069___ 445 GTATCAGGACAGCTTTTGGCCTT----TGTTTTTAATGCGATCCTTGGCA 490
|||.||||.|||||..|.||||| || ||||||.|||.|.||
RBAM_006270__ 445 GTAACAGGCCAGCTGCTTGCCTTCACGTG----TAATGCTATCATCGG-- 488
BSNT_01069___ 491 CAACAATG-----GGAGAGAACTCCCATGTGTGGAGGTTTATGCTGGTCA 535
||||| ||.||.|.|||.||.|..|||.|.|.||||||.||.|
RBAM_006270__ 489 ---CAATGTGCTTGGTGATACCTCTCACGCCTGGCGCTATATGCTCGTTA 535
BSNT_01069___ 536 TTGCGTCACTTCCAGCCTTGTTCCTGTTTTTCGGCATGATCAGAATGCCC 585
|.||..|.|||||.||..|.|||.||||||||||.|||.|.|.|.|.||.
RBAM_006270__ 536 TCGCAGCCCTTCCGGCGGTATTCTTGTTTTTCGGTATGCTGAAAGTTCCT 585
BSNT_01069___ 586 GAGAGTCCCCGCTGGCTTGTTTCTAAAGGAAGAAAAGAAGATGCTTTGCG 635
||.|||||.||||||||.|||||||||||||||||||||||||||.|||.
RBAM_006270__ 586 GAAAGTCCGCGCTGGCTGGTTTCTAAAGGAAGAAAAGAAGATGCTCTGCA 635
BSNT_01069___ 636 TGTATT-----GAAAAAAATCAGGGATGA----AAAGCGGGCAGCAG-CT 675
.||..| | |||.|||.|||| ||||| |.|| ||
RBAM_006270__ 636 CGTTCTCCGGCG-----AATAAGGAATGAAGAGAAAGC-----GAAGTCT 675
BSNT_01069___ 676 GAGCT-GCAAGAAATTGAAT-TCGCTTTCAAAAAAGAAGATCAGCTTGAA 723
||||| || .||.||||||| |..||||| |.||.||||.|.||.|.||.
RBAM_006270__ 676 GAGCTCGC-TGAGATTGAATCTGCCTTTC-ATAAGGAAGCTGAGATGGAG 723
BSNT_01069___ 724 AAAGCGACGTTTAAAGATCTTTCGGTCCCATGGGTGCGCCGTATTGTGTT 773
.|.||..|.|||||.||||||.|.||.||.|||||||||||.||||||||
RBAM_006270__ 724 CAGGCCGCCTTTAAGGATCTTGCCGTTCCGTGGGTGCGCCGCATTGTGTT 773
BSNT_01069___ 774 TATTGGATTAGGGATTGCGATTGTACAGCAAATTACAGGTGTGAATTCGA 823
|||.||..|.||.||||||.|.||.|||||..|.||.||.||||||||.|
RBAM_006270__ 774 TATCGGGATCGGAATTGCGGTAGTGCAGCAGCTCACCGGCGTGAATTCAA 823
BSNT_01069___ 824 TAATGTATTATGGGACTGAAATTCTAAGAAATTCCGGTTTCCAAACGGAA 873
|.|||||||||||.|||.|||||.|||.|.||.||||||||.|.||..||
RBAM_006270__ 824 TTATGTATTATGGAACTCAAATTTTAAAAGATGCCGGTTTCGAGACAAAA 873
BSNT_01069___ 874 GCCGCTTTAATCGGAAATATTGCGAATGGCGTGATTTCGGTATTGGCAAC 923
|||||.||||||||.|||||.||.||.||.|||||||||||..|.||.||
RBAM_006270__ 874 GCCGCATTAATCGGCAATATCGCTAACGGTGTGATTTCGGTGCTCGCGAC 923
BSNT_01069___ 924 ATTCGTCGGAATCTGGCTGCTGGGAAGAGTGGGGCGCCGGCCGATGCTGA 973
.||.||.|||||.|||||.||.||.|.|||.||.|||||.||||||||||
RBAM_006270__ 924 TTTTGTAGGAATATGGCTTCTCGGCAAAGTCGGCCGCCGCCCGATGCTGA 973
BSNT_01069___ 974 TGACAGGCTTGATCGGTACGACAACAGCATTATTGC---TAATCGGGATA 1020
||||.||..|||||||.||| ||.||..|..||| |.|||||..|.
RBAM_006270__ 974 TGACGGGGCTGATCGGAACG---ACTGCGGTGCTGCTTTTGATCGGAGTT 1020
BSNT_01069___ 1021 TTCTCACTTGTACTTGAAGGATCACCGGCACTTCCGTATGTAGTCCTGTC 1070
.|.||..|.||.||..|||||||.||.||.|||||.|||||.||.||.||
RBAM_006270__ 1021 CTGTCTGTCGTGCTGAAAGGATCGCCTGCTCTTCCTTATGTGGTTCTTTC 1070
BSNT_01069___ 1071 ATTAACGGTCACATTTCTTGCTTTTCAGCAGGGCGCCATTTCACCAGTGA 1120
||||||.|||||.||.|||||.|||||||||||.||..|.||.||.||||
RBAM_006270__ 1071 ATTAACAGTCACTTTCCTTGCGTTTCAGCAGGGGGCTGTCTCTCCGGTGA 1120
BSNT_01069___ 1121 CTTGGCTGATGCTATCTGAAATTTTCCCGCTTCGCCTTCGCGGACTGGGA 1170
|.|||||||||||.|||||.||.|||||||||||..|.||.|||||.||.
RBAM_006270__ 1121 CCTGGCTGATGCTGTCTGAGATATTCCCGCTTCGATTGCGGGGACTTGGT 1170
BSNT_01069___ 1171 ATGGGTGTCACGGTATTCTGTCTGTGGATGGTGAATTTTGCAGTCAGTTT 1220
|||||.|||||.||.|||||.||.|||||.|||||.||....||..||||
RBAM_006270__ 1171 ATGGGGGTCACTGTCTTCTGCCTCTGGATCGTGAACTTCCTTGTTGGTTT 1220
BSNT_01069___ 1221 CACGTTTCCGATATTGCTGGCAGCTATCGGCCTGTCCACAACGTTCTTTA 1270
|||.||||||.|..||||.|||...|||||..||||..||||.|||||.|
RBAM_006270__ 1221 CACTTTTCCGGTCCTGCTCGCAAACATCGGATTGTCTGCAACCTTCTTCA 1270
BSNT_01069___ 1271 TCTTCGT--TGGATTAGGAATTTGC-TCTGTCTTGTTTGTGAAGAGGTTT 1317
|.||.|| || |||||.| |.|| ||.||..|.||||||||.|||||.
RBAM_006270__ 1271 TTTTTGTCCTG--TTAGGGA-TAGCGTCCGTTATATTTGTGAAAAGGTTC 1317
BSNT_01069___ 1318 TTGCCGGAAACGAAAGGGCTTTCGCTTGAGCAGCTGGAGGAAAACTTCCG 1367
.|.||||||||||||||.||.|||||.||.|||||.||..||||||||||
RBAM_006270__ 1318 CTTCCGGAAACGAAAGGTCTGTCGCTCGAACAGCTTGAACAAAACTTCCG 1367
BSNT_01069___ 1368 CGCTTATGATCACGGCGGGGCAAAGAAGGATTC----TGGGGCTGAA--- 1410
..||||||| |||.|..|| || |.|.||.|||
RBAM_006270__ 1368 TACTTATGA------------AAAAACAGA-TCGTAATAGCGCAGAAGCC 1404
BSNT_01069___ 1411 ---GTGATTGGATAA 1422
||||..||.|||
RBAM_006270__ 1405 AAGGTGAGCGGGTAA 1419
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