Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01069 and RBAM_006270

See Amino acid alignment / Visit BSNT_01069 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:44
# Commandline: needle
#    -asequence dna-align/BSNT_01069___ydjK.1.9828.seq
#    -bsequence dna-align/RBAM_006270___ydjK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01069___ydjK-RBAM_006270___ydjK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01069___ydjK-RBAM_006270___ydjK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01069___ydjK
# 2: RBAM_006270___ydjK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1465
# Identity:    1040/1465 (71.0%)
# Similarity:  1040/1465 (71.0%)
# Gaps:          89/1465 ( 6.1%)
# Score: 3536.0
# 
#
#=======================================

BSNT_01069___      1 ATGAATAAACAAGGCAATCA-AATGTCATTTTTACGTACAATTATTTTAG     49
                     |||||||||.|..|||..|| .|| ||||||||..|.||.||.|||||||
RBAM_006270__      1 ATGAATAAAAATAGCAGCCAGCAT-TCATTTTTGAGAACCATCATTTTAG     49

BSNT_01069___     50 TCTCCACTTTCGGCGGGCTTCTTTTTGGCTATGATACCGGTGTGCTCAAT     99
                     |.||.||.|||||.||.||.|||||.|||||.|||||.|||||..|.|||
RBAM_006270__     50 TATCGACGTTCGGGGGTCTACTTTTCGGCTACGATACAGGTGTAATTAAT     99

BSNT_01069___    100 GGAGCTTTGCCGTATATGGGAGAGCCGGATCAGCTTAATCTCAATGCCTT    149
                     ||.||..||||||.|||||..||..|.||.|||||||||||.|..||.||
RBAM_006270__    100 GGGGCGCTGCCGTTTATGGCGGAAGCTGACCAGCTTAATCTTACCGCTTT    149

BSNT_01069___    150 CACAGAGGGCCTTGTCACCAGTTCACTTCTTTTTGGAGCGGCACTGGGTG    199
                     .||.||.||..|.||..|.||.||.||.||.||.||.||.||..|.||.|
RBAM_006270__    150 GACTGAAGGGATGGTGGCGAGCTCCCTGCTCTTGGGGGCTGCGATCGGAG    199

BSNT_01069___    200 CTGTGTTTGGCGGCAGGATGTCTGATTTTAACGGCCGCCGCAAAAATATT    249
                     |.||.||.||.||.||..||||.||.|.|||||||.|.||.||||||||.
RBAM_006270__    200 CAGTTTTCGGAGGGAGATTGTCGGACTATAACGGCAGACGTAAAAATATC    249

BSNT_01069___    250 TTGTTCCTCGCTGTTATATTTTTTATTT----CAACGATTGGGTGTACGT    295
                     .|..||||.||.||    |||.||.|||    |.|||.||||.|||||..
RBAM_006270__    250 CTTATCCTTGCCGT----TTTGTTCTTTGCAGCGACGCTTGGATGTACAC    295

BSNT_01069___    296 TTGCTCCAAATGTTACGGTCATGATTATTTCCCGTTTTGTGCTTGGTATT    345
                     |.||.||.||.||..|.||.|||.|.||.|||||||||.||||.||..||
RBAM_006270__    296 TGGCGCCTAACGTATCTGTTATGGTCATCTCCCGTTTTCTGCTGGGGCTT    345

BSNT_01069___    346 GCGGTCGGGGGTGCATCCGTAACGGTGCCTGCCTATTTAGCAGAGATGTC    395
                     ||.||||||||.|||||||||||.||.||.||.|||||.||.||.|||||
RBAM_006270__    346 GCCGTCGGGGGAGCATCCGTAACCGTTCCGGCGTATTTGGCTGAAATGTC    395

BSNT_01069___    396 TCCTGTGGAAAGCAG-GGGACGGATGGTGACGCAGAACGAATTGATGATT    444
                     .||.|.|||||||.| |||| |.|||||.||.||.||.||||||||||||
RBAM_006270__    396 GCCGGCGGAAAGCCGAGGGA-GAATGGTTACCCAAAATGAATTGATGATT    444

BSNT_01069___    445 GTATCAGGACAGCTTTTGGCCTT----TGTTTTTAATGCGATCCTTGGCA    490
                     |||.||||.|||||..|.|||||    ||    ||||||.|||.|.||  
RBAM_006270__    445 GTAACAGGCCAGCTGCTTGCCTTCACGTG----TAATGCTATCATCGG--    488

BSNT_01069___    491 CAACAATG-----GGAGAGAACTCCCATGTGTGGAGGTTTATGCTGGTCA    535
                        |||||     ||.||.|.|||.||.|..|||.|.|.||||||.||.|
RBAM_006270__    489 ---CAATGTGCTTGGTGATACCTCTCACGCCTGGCGCTATATGCTCGTTA    535

BSNT_01069___    536 TTGCGTCACTTCCAGCCTTGTTCCTGTTTTTCGGCATGATCAGAATGCCC    585
                     |.||..|.|||||.||..|.|||.||||||||||.|||.|.|.|.|.||.
RBAM_006270__    536 TCGCAGCCCTTCCGGCGGTATTCTTGTTTTTCGGTATGCTGAAAGTTCCT    585

BSNT_01069___    586 GAGAGTCCCCGCTGGCTTGTTTCTAAAGGAAGAAAAGAAGATGCTTTGCG    635
                     ||.|||||.||||||||.|||||||||||||||||||||||||||.|||.
RBAM_006270__    586 GAAAGTCCGCGCTGGCTGGTTTCTAAAGGAAGAAAAGAAGATGCTCTGCA    635

BSNT_01069___    636 TGTATT-----GAAAAAAATCAGGGATGA----AAAGCGGGCAGCAG-CT    675
                     .||..|     |     |||.|||.||||    |||||     |.|| ||
RBAM_006270__    636 CGTTCTCCGGCG-----AATAAGGAATGAAGAGAAAGC-----GAAGTCT    675

BSNT_01069___    676 GAGCT-GCAAGAAATTGAAT-TCGCTTTCAAAAAAGAAGATCAGCTTGAA    723
                     ||||| || .||.||||||| |..||||| |.||.||||.|.||.|.||.
RBAM_006270__    676 GAGCTCGC-TGAGATTGAATCTGCCTTTC-ATAAGGAAGCTGAGATGGAG    723

BSNT_01069___    724 AAAGCGACGTTTAAAGATCTTTCGGTCCCATGGGTGCGCCGTATTGTGTT    773
                     .|.||..|.|||||.||||||.|.||.||.|||||||||||.||||||||
RBAM_006270__    724 CAGGCCGCCTTTAAGGATCTTGCCGTTCCGTGGGTGCGCCGCATTGTGTT    773

BSNT_01069___    774 TATTGGATTAGGGATTGCGATTGTACAGCAAATTACAGGTGTGAATTCGA    823
                     |||.||..|.||.||||||.|.||.|||||..|.||.||.||||||||.|
RBAM_006270__    774 TATCGGGATCGGAATTGCGGTAGTGCAGCAGCTCACCGGCGTGAATTCAA    823

BSNT_01069___    824 TAATGTATTATGGGACTGAAATTCTAAGAAATTCCGGTTTCCAAACGGAA    873
                     |.|||||||||||.|||.|||||.|||.|.||.||||||||.|.||..||
RBAM_006270__    824 TTATGTATTATGGAACTCAAATTTTAAAAGATGCCGGTTTCGAGACAAAA    873

BSNT_01069___    874 GCCGCTTTAATCGGAAATATTGCGAATGGCGTGATTTCGGTATTGGCAAC    923
                     |||||.||||||||.|||||.||.||.||.|||||||||||..|.||.||
RBAM_006270__    874 GCCGCATTAATCGGCAATATCGCTAACGGTGTGATTTCGGTGCTCGCGAC    923

BSNT_01069___    924 ATTCGTCGGAATCTGGCTGCTGGGAAGAGTGGGGCGCCGGCCGATGCTGA    973
                     .||.||.|||||.|||||.||.||.|.|||.||.|||||.||||||||||
RBAM_006270__    924 TTTTGTAGGAATATGGCTTCTCGGCAAAGTCGGCCGCCGCCCGATGCTGA    973

BSNT_01069___    974 TGACAGGCTTGATCGGTACGACAACAGCATTATTGC---TAATCGGGATA   1020
                     ||||.||..|||||||.|||   ||.||..|..|||   |.|||||..|.
RBAM_006270__    974 TGACGGGGCTGATCGGAACG---ACTGCGGTGCTGCTTTTGATCGGAGTT   1020

BSNT_01069___   1021 TTCTCACTTGTACTTGAAGGATCACCGGCACTTCCGTATGTAGTCCTGTC   1070
                     .|.||..|.||.||..|||||||.||.||.|||||.|||||.||.||.||
RBAM_006270__   1021 CTGTCTGTCGTGCTGAAAGGATCGCCTGCTCTTCCTTATGTGGTTCTTTC   1070

BSNT_01069___   1071 ATTAACGGTCACATTTCTTGCTTTTCAGCAGGGCGCCATTTCACCAGTGA   1120
                     ||||||.|||||.||.|||||.|||||||||||.||..|.||.||.||||
RBAM_006270__   1071 ATTAACAGTCACTTTCCTTGCGTTTCAGCAGGGGGCTGTCTCTCCGGTGA   1120

BSNT_01069___   1121 CTTGGCTGATGCTATCTGAAATTTTCCCGCTTCGCCTTCGCGGACTGGGA   1170
                     |.|||||||||||.|||||.||.|||||||||||..|.||.|||||.||.
RBAM_006270__   1121 CCTGGCTGATGCTGTCTGAGATATTCCCGCTTCGATTGCGGGGACTTGGT   1170

BSNT_01069___   1171 ATGGGTGTCACGGTATTCTGTCTGTGGATGGTGAATTTTGCAGTCAGTTT   1220
                     |||||.|||||.||.|||||.||.|||||.|||||.||....||..||||
RBAM_006270__   1171 ATGGGGGTCACTGTCTTCTGCCTCTGGATCGTGAACTTCCTTGTTGGTTT   1220

BSNT_01069___   1221 CACGTTTCCGATATTGCTGGCAGCTATCGGCCTGTCCACAACGTTCTTTA   1270
                     |||.||||||.|..||||.|||...|||||..||||..||||.|||||.|
RBAM_006270__   1221 CACTTTTCCGGTCCTGCTCGCAAACATCGGATTGTCTGCAACCTTCTTCA   1270

BSNT_01069___   1271 TCTTCGT--TGGATTAGGAATTTGC-TCTGTCTTGTTTGTGAAGAGGTTT   1317
                     |.||.||  ||  |||||.| |.|| ||.||..|.||||||||.|||||.
RBAM_006270__   1271 TTTTTGTCCTG--TTAGGGA-TAGCGTCCGTTATATTTGTGAAAAGGTTC   1317

BSNT_01069___   1318 TTGCCGGAAACGAAAGGGCTTTCGCTTGAGCAGCTGGAGGAAAACTTCCG   1367
                     .|.||||||||||||||.||.|||||.||.|||||.||..||||||||||
RBAM_006270__   1318 CTTCCGGAAACGAAAGGTCTGTCGCTCGAACAGCTTGAACAAAACTTCCG   1367

BSNT_01069___   1368 CGCTTATGATCACGGCGGGGCAAAGAAGGATTC----TGGGGCTGAA---   1410
                     ..|||||||            |||.|..|| ||    |.|.||.|||   
RBAM_006270__   1368 TACTTATGA------------AAAAACAGA-TCGTAATAGCGCAGAAGCC   1404

BSNT_01069___   1411 ---GTGATTGGATAA   1422
                        ||||..||.|||
RBAM_006270__   1405 AAGGTGAGCGGGTAA   1419


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