Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05209 and RBAM_006210

See Amino acid alignment / Visit BSNT_05209 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05209___yvdS.1.9828.seq
#    -bsequence dna-align/RBAM_006210___yvdS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05209___yvdS-RBAM_006210___yvdS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05209___yvdS-RBAM_006210___yvdS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05209___yvdS
# 2: RBAM_006210___yvdS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity:     252/336 (75.0%)
# Similarity:   252/336 (75.0%)
# Gaps:           6/336 ( 1.8%)
# Score: 935.5
# 
#
#=======================================

BSNT_05209___      1 TTGAATTGGGTTCTTGTTTTTATTGCAGGGCTTTTAGAGGTTGTTTGGGC     50
                     .||.|||||.|.|||||.||.||.||.||.||.|||||.||.||||||||
RBAM_006210__      1 ATGTATTGGCTGCTTGTATTGATAGCCGGACTGTTAGAAGTAGTTTGGGC     50

BSNT_05209___     51 CTCTTCCCTCAAACATGCCGATTCGCTTTTGGATTGGATCATCATTTTTA    100
                     .||..||||.||.|||||.||||||||.||.||||||||....|||||..
RBAM_006210__     51 GTCCGCCCTGAAGCATGCGGATTCGCTCTTTGATTGGATTGGTATTTTCC    100

BSNT_05209___    101 TCTTAATCGCGGTCAGCTTTATCCTGTTGATCCGCTCTTATCAAAAAATC    150
                     |..|.||.||.|||||||||.|..||.||||||||||||||.|||||||.
RBAM_006210__    101 TTCTGATTGCCGTCAGCTTTCTGATGCTGATCCGCTCTTATAAAAAAATT    150

BSNT_05209___    151 CCGATGGCCGCGGCGTACACTGTGTTTGTGGGAATCGGAACCGTCGGAAC    200
                     ||||||||.||.||.||.||.||.|||||.|||||.||.||||||||.||
RBAM_006210__    151 CCGATGGCTGCCGCATATACCGTTTTTGTCGGAATAGGCACCGTCGGCAC    200

BSNT_05209___    201 ATATCTGACTGGAATTGTTCTGGGCGAATCCTTCTCAGCAGCCCAAATGT    250
                     ||||.|.||.||..|..||.|.||||||||.||.|||...|..|||||.|
RBAM_006210__    201 ATATGTAACGGGCGTCATTTTAGGCGAATCGTTTTCAATCGGGCAAATAT    250

BSNT_05209___    251 TCTTTTTAGCTTTATTGCTGGCTGGCATTTTAGGAATGAAATTATTTACG    300
                     |||||||.|||||..||.||.|.|||||||||||||||||..||||||||
RBAM_006210__    251 TCTTTTTGGCTTTGCTGTTGTCCGGCATTTTAGGAATGAAGGTATTTACG    300

BSNT_05209___    301 AAAGAAAGCAAATCTCAACCGGGAGGTGAACAATAA    336
                     |||||||      ||.||.|..|.||||||||.|||
RBAM_006210__    301 AAAGAAA------CTGAAACAAGGGGTGAACATTAA    330


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