Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01008 and RBAM_006170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_01008___ydhQ.1.9828.seq
# -bsequence dna-align/RBAM_006170___ydhQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01008___ydhQ-RBAM_006170___ydhQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01008___ydhQ-RBAM_006170___ydhQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01008___ydhQ
# 2: RBAM_006170___ydhQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 726
# Identity: 535/726 (73.7%)
# Similarity: 535/726 (73.7%)
# Gaps: 21/726 ( 2.9%)
# Score: 1910.0
#
#
#=======================================
BSNT_01008___ 1 ATGAATAAATACGAAATTATTGCAAATGAAATGAGAAATAGAATTAAAAA 50
||||||||.|||||||..||.||.||.|||||||||||.||.|||||||.
RBAM_006170__ 1 ATGAATAAGTACGAAAAAATCGCCAACGAAATGAGAAAGAGGATTAAAAG 50
BSNT_01008___ 51 TAACGTATATCCGATCGATCAGCCCATTCCTGATGAAGTATCTCTTGCAA 100
.|..||||||...||.||||||||.||.||.||||||....|.||.||..
RBAM_006170__ 51 CAGTGTATATGACATAGATCAGCCGATCCCGGATGAAAAGACGCTCGCTG 100
BSNT_01008___ 101 AAGAATTTAACTCAAGCCGCATGACGATGAAGAGAGC-CTTGGATA-ATT 148
..||.||....|..|||||.||||||||||||.|.|| ||| |||| |.|
RBAM_006170__ 101 CGGAGTTCGGGTGCAGCCGGATGACGATGAAGCGGGCGCTT-GATACACT 149
BSNT_01008___ 149 TAGTTGCCGAGGGTCTGCTGTTTAGAAAACGCGGCCATGGCACGTTTATT 198
| |..||.||.||..||||.||.||||||.|.||.||.|||||||||||.
RBAM_006170__ 150 T-GCGGCTGAAGGGATGCTTTTCAGAAAAAGAGGGCACGGCACGTTTATC 198
BSNT_01008___ 199 ATTCAATCTGCAATACAGGATGACCATGTACATGTAGTCAGCAATGAGAT 248
||||||||.||.||.||||||||.||.||.||.|||||||||||.||.||
RBAM_006170__ 199 ATTCAATCAGCCATGCAGGATGAGCACGTTCACGTAGTCAGCAACGAAAT 248
BSNT_01008___ 249 TCTCGGATTGACCAACTTGCTGAAAGATAAAAAAATCCAAAGCAAGGTCA 298
||||||..|||.|||.|||.|.||||..||.||.|||.|.||||||||||
RBAM_006170__ 249 TCTCGGCCTGAGCAATTTGTTAAAAGGAAAGAATATCAAGAGCAAGGTCA 298
BSNT_01008___ 299 TTCAGTTTAAAGTGCAATTTCCCACTGAGGAAGTGGCCGCCCATTTGTCT 348
|.|.||||.|||||||.|||||..|..|.||.||.|||||.||||||.|.
RBAM_006170__ 299 TCCGGTTTGAAGTGCAGTTTCCGTCCCAAGATGTCGCCGCACATTTGGCC 348
BSNT_01008___ 349 ATTGATCAGAAAACACCGGTTTATTATGTCGTTCGGCTGCGAATTGTAGA 398
||.|||.|.||.||.||.||.||||||||.||..||||..|||||||.||
RBAM_006170__ 349 ATCGATGAAAAGACTCCCGTCTATTATGTAGTAAGGCTCAGAATTGTTGA 398
BSNT_01008___ 399 AGGTGAACCCTATGTATTAGAAAAAACATATATGCCGAC--TCATTTAAT 446
|||.|||||.||.||..|.||||||||.||.||||||.| .|.|| ||
RBAM_006170__ 399 AGGCGAACCGTACGTTCTTGAAAAAACGTACATGCCGGCGAGCCTT--AT 446
BSNT_01008___ 447 ACCGGGCATTAATGACGATGTCCTTCATGATTCGATCTACAATCATATTA 496
|||.||||||||||||||.||.||..|..||||.||||||.|||||||||
RBAM_006170__ 447 ACCCGGCATTAATGACGAGGTGCTCAACCATTCCATCTACGATCATATTA 496
BSNT_01008___ 497 C-----AAATGTGCTGCAGCTCAAAATCGCCGGAACGCATCGGAAAATCA 541
| || ||.||||||||||||||.||..|.||..|.|||||||
RBAM_006170__ 497 CGCGGGAA-----CTCCAGCTCAAAATCGCAGGCTCACACAGAAAAATCA 541
BSNT_01008___ 542 GAGCCTGCAAATCTGATCATATTGACCAGCAGCATCTGGGCTGCAAACAG 591
||||.|||||.||.|||.||||.||.|||||..||||.||||||...|.|
RBAM_006170__ 542 GAGCGTGCAAGTCGGATGATATGGATCAGCAATATCTCGGCTGCCGGCCG 591
BSNT_01008___ 592 GATGATCCAATTCTTGAAGTGGAACATGTGGGCTTCTTAGATACCGGGAT 641
|||||.||.||.||||||||.||.|||||.|||||.||.||.|.|||.|.
RBAM_006170__ 592 GATGACCCGATACTTGAAGTCGAGCATGTAGGCTTTTTGGACAACGGCAC 641
BSNT_01008___ 642 TCCATTTGAATATTCCTTTTCACGTCATCGGCATGACAAGTTTGTTGTGA 691
|||.|||||||||||.|||||.||.||.||.||||||||||||||.||||
RBAM_006170__ 642 TCCCTTTGAATATTCATTTTCCCGCCACCGTCATGACAAGTTTGTCGTGA 691
BSNT_01008___ 692 CTTCTGTAAACATACGGCGCTGA--- 714
|.||.||.||.|||...||.|.|
RBAM_006170__ 692 CCTCAGTCAATATAAAACGTTCATAA 717
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