Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02069 and RBAM_006120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02069___yjiA.1.9828.seq
# -bsequence dna-align/RBAM_006120___yjiA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02069___yjiA-RBAM_006120___yjiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02069___yjiA-RBAM_006120___yjiA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02069___yjiA
# 2: RBAM_006120___yjiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 317
# Identity: 168/317 (53.0%)
# Similarity: 168/317 (53.0%)
# Gaps: 100/317 (31.5%)
# Score: 404.0
#
#
#=======================================
BSNT_02069___ 1 GTGGCAGCA-CAGACTGATTA-----CAAAAAACAAGTTGTCGGAATCCT 44
.||.||||| ||| || | |||||| ||.|.||
RBAM_006120__ 1 ATGTCAGCAGCAG---GA--AATCGGCAAAAA-----TTTTGGG------ 34
BSNT_02069___ 45 ACTTTCA--------CTT------GCATTCGTACTCTTTGTGTTCTCTTT 80
||| ||| |..||||...|.||.||.||||||||
RBAM_006120__ 35 ----TCATGGCGATGCTTATAGCGGTCTTCGCCGTGTTCGTTTTCTCTTT 80
BSNT_02069___ 81 TTCTGAGAGACA-TGAAAAACCGCTTGTTGAGGGAAAAAAACAGGAAAAC 129
||||||||..|| |.|.||| |.|||
RBAM_006120__ 81 TTCTGAGAATCATTCACAAA-------------------------AGAAC 105
BSNT_02069___ 130 TGGCATACTGTCGTCGACAAAGCCTCCGTCAAAAT-TTATGGCAGCCGAT 178
|||||.||.|..||.|||.|.||.||.||.||..| ||..|.||||.|||
RBAM_006120__ 106 TGGCACACAGCGGTTGACCAGGCGTCAGTGAATGTCTTCGGCCAGCAGAT 155
BSNT_02069___ 179 -TAGTTGAAGAAAA--------CAAATTAAAGCAAAAACTCG--GCCATA 217
| |||||.||.| ||| |||.||||| ||
RBAM_006120__ 156 CT--TTGAAAAAGACCGTCTGGCAA--------AAACACTCGACGC---- 191
BSNT_02069___ 218 AAC---AAGCCGATTCTATTTTGACCCTTCTGAAACTCGCCAACGAAAAA 264
|| |.||.||.|||.|||||||.|||.|||||||.||.||.|.|.|
RBAM_006120__ 192 -ACGTGAGGCAGAATCTCTTTTGACTCTTGTGAAACTTGCAAATGCAGA- 239
BSNT_02069___ 265 CACATTACAT--TATAA 279
||||.|||| |.|||
RBAM_006120__ 240 -ACATCACATCATCTAA 255
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