Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00986 and RBAM_006110

See Amino acid alignment / Visit BSNT_00986 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_00986___ydhE.1.9828.seq
#    -bsequence dna-align/RBAM_006110___ydhE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00986___ydhE-RBAM_006110___ydhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00986___ydhE-RBAM_006110___ydhE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00986___ydhE
# 2: RBAM_006110___ydhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1219
# Identity:     884/1219 (72.5%)
# Similarity:   884/1219 (72.5%)
# Gaps:          56/1219 ( 4.6%)
# Score: 3010.0
# 
#
#=======================================

BSNT_00986___      1 AT---GAAGACAGTAT--TGATTTTGAATTTTCCTGCGGAAGGCCATGTG     45
                     ||   ||| ||| |||  ||||..|.||||||||.||.|||||.||.||.
RBAM_006110__      1 ATGGCGAA-ACA-TATTCTGATGATCAATTTTCCCGCAGAAGGACACGTA     48

BSNT_00986___     46 AATCCTACCTTAGGCATTACAAAAGCGTTTTCCGATAAGGGATATGATGT     95
                     ||.||.||.||.||.||.|||||.||.||...|||...|||..||.|.||
RBAM_006110__     49 AACCCGACATTGGGTATGACAAAGGCCTTCAGCGAACGGGGCGATCACGT     98

BSNT_00986___     96 CCATTATATATCCACTGAAAAATATAAAAAACGATTAGAAGCAGCGGGAG    145
                     .||||||||.||.||.||||||||.||||...||.|.||||.||..||.|
RBAM_006110__     99 TCATTATATCTCAACGGAAAAATACAAAAGCAGACTGGAAGGAGTAGGGG    148

BSNT_00986___    146 CAACGGTCCATCTTCACCGGGATCTGCTGCGAACGACACCTATTCAT---    192
                     |.|..||.|||||||||.|.||||||||..|||.||||||||||.||   
RBAM_006110__    149 CGAAAGTTCATCTTCACAGCGATCTGCTCAGAATGACACCTATTGATCCC    198

BSNT_00986___    193 GTCGGTTCGCCCAATGGCATTCTTG-ATTTCGTGAAA-ATCCATATCAAA    240
                     |.|.||.||.||   |||||.|||| ||||  |.||| .|.|||||||||
RBAM_006110__    199 GGCAGTCCGTCC---GGCATACTTGCATTT--TTAAAGGTTCATATCAAA    243

BSNT_00986___    241 ACGTCATTGGACATTTTACAGATTGT-CAAAGACTTATCTAAGAG--CAT    287
                     ||||||.||||.||||||||.||||| ||..|.|   |...||||  |||
RBAM_006110__    244 ACGTCACTGGAGATTTTACATATTGTGCAGCGGC---TGGCAGAGGACAT    290

BSNT_00986___    288 TCAATTTGATTTTGTTTATTATGATAAATTCGGCGCGGGGGAATTGGTAA    337
                     ||||||.||....||.|||||||||||||||||.|||||.||..||||..
RBAM_006110__    291 TCAATTCGACGCCGTCTATTATGATAAATTCGGTGCGGGAGAGCTGGTGC    340

BSNT_00986___    338 GGGATTA-CTTAGATATTCCAGGAGTCTCTTCATCGGCGTCTTTCTTGTT    386
                     ||||||| ||.| |.|||||.||..|||||||.||.||.||.|||.||||
RBAM_006110__    341 GGGATTATCTCA-ACATTCCCGGCATCTCTTCTTCAGCATCCTTCCTGTT    389

BSNT_00986___    387 TGGCGAGGAGCACCTGAAAATCCTGCCGCTGCATCCGGAGTCTGGAGCGC    436
                     ....||.||.|..||||||||.||||||||.||||||||.||.||.|.||
RBAM_006110__    390 CAATGAAGACCGTCTGAAAATACTGCCGCTCCATCCGGAATCGGGCGTGC    439

BSNT_00986___    437 CGCTTGAATTGGATCA-AGAGTGCGAAGATCTTTTGGCAAAAATGAAAGA    485
                     ||.||.|...||| || .||.||.|||||.||.|||||..|.||||||||
RBAM_006110__    440 CGTTTCAGCCGGA-CAGGGAATGTGAAGAGCTGTTGGCCGAGATGAAAGA    488

BSNT_00986___    486 AACGTACGGTGTTGCCCCGAAAAACCTGGTTCAATTCATGAACAATAAAG    535
                     .|..||||||||.|||||..|.|.|.||||||||||.||||||||.|.||
RBAM_006110__    489 TAAATACGGTGTCGCCCCTGACAGCATGGTTCAATTTATGAACAACACAG    538

BSNT_00986___    536 GGGAATTGAACGTAGTGTATACAAGCCGTTATTTTCAGCCAGAAAGTGAT    585
                     |.|||||||||||.||.|||||||||.|.|||||||||||.||||||||.
RBAM_006110__    539 GTGAATTGAACGTCGTCTATACAAGCAGATATTTTCAGCCCGAAAGTGAG    588

BSNT_00986___    586 CGTTTCGGGGATGAATGTCTGTTTATCGGGCCAAGCTTTCCAAAGAGAGC    635
                     ...|||||.|||||.|.|.|.||||||||.||.||.|||||.||||||  
RBAM_006110__    589 ACATTCGGAGATGAGTATTTATTTATCGGTCCGAGTTTTCCGAAGAGA--    636

BSNT_00986___    636 GGAAAAAACG----GATTTCCCGATTGA-ACAGCTAAAAGATGAGAGTGT    680
                       |||...||    ||.||||||||||| .|| |||||..||||.|..||
RBAM_006110__    637 --AAAGGGCGCGTCGACTTCCCGATTGACTCA-CTAAAGAATGAAAAAGT    683

BSNT_00986___    681 CATTTATATTTCAATGGGGACTGTACTGGATCATACAGAGGATTTCTTCA    730
                     |||||||||.||||||||.||.||.||.|...|.||.||.|..||.||||
RBAM_006110__    684 CATTTATATCTCAATGGGAACGGTGCTCGGGGACACGGAAGCGTTTTTCA    733

BSNT_00986___    731 ACCTTTGTATTGATGCATTTTCAGGCTTTAACGGAAAAGTCGTCATCGCT    780
                     |.||.||.||.||.||.||.||||..|||.|.||||||||.|||||.||.
RBAM_006110__    734 ATCTGTGCATAGACGCGTTCTCAGATTTTGAAGGAAAAGTTGTCATTGCC    783

BSNT_00986___    781 GCCGGAGAAAAAGCGGACCTGACCAAATTAAAGCAGGCGCCGGAAAACTT    830
                     |||||.||||||||.||.|||.|.|||.|.||.|||||||||||||||||
RBAM_006110__    784 GCCGGGGAAAAAGCCGATCTGTCGAAAATCAAACAGGCGCCGGAAAACTT    833

BSNT_00986___    831 TATCATTGCTCCGTATGTCCCTCAGCTGGAAGTGCTGGAGCAATCGGATG    880
                     ||||||.||.|||||.||.||.|||||.||||||||||||||..|.||.|
RBAM_006110__    834 TATCATCGCCCCGTACGTGCCGCAGCTTGAAGTGCTGGAGCAGGCCGACG    883

BSNT_00986___    881 TTTTCATTACACACGGCGGAATGAACAGCGTAAACGAAGGCATTCATT-T    929
                     |.||..|.||.||.||||||||||||||.|||||.||||||||||||| |
RBAM_006110__    884 TGTTTGTCACGCATGGCGGAATGAACAGTGTAAATGAAGGCATTCATTAT    933

BSNT_00986___    930 CAGCGTGCCACTGGTTGTCATGCCTCATGACAAGGATCAGCCGATGGTGG    979
                     || .|||||.|||||.||.||.||.||.||.||.||||||||||||||.|
RBAM_006110__    934 CA-AGTGCCGCTGGTCGTTATCCCGCACGATAAAGATCAGCCGATGGTTG    982

BSNT_00986___    980 CGCAGCGTCTCTCTGAACTCCATGCAGGCTAT---GT-CATCTCTAAAGA   1025
                     |||..||.||..|||||.|..|||||||||||   || ||    .|||||
RBAM_006110__    983 CGCGCCGCCTGACTGAATTGGATGCAGGCTATACCGTGCA----AAAAGA   1028

BSNT_00986___   1026 TGAAGTCAATGCCCAAATATTAAAACAGGCCGTAGATGAGGTTTTGCGCA   1075
                     ||||||.|..||..|||...||||.|..||||..||.||.||..|||..|
RBAM_006110__   1029 TGAAGTGAGCGCTGAAAAGGTAAAGCTTGCCGCGGAAGAAGTGCTGCATA   1078

BSNT_00986___   1076 ACGATCAGTATATGGCAGGCATTAAAAAAATCAATCAAAGCTTCAAAGAA   1125
                     |||...|.||.|....|||||||.||...||.|||.|||||||.||||||
RBAM_006110__   1079 ACGGAAAATACAAACAAGGCATTCAAGCCATTAATGAAAGCTTTAAAGAA   1128

BSNT_00986___   1126 TGTATGGACATGGAAGAAGTGATGGAGCGGATTGATGAGTTGATTCGCCA   1175
                     ||||.|||||||.|.||.||..|||..|||||.||...|||.|||   .|
RBAM_006110__   1129 TGTACGGACATGAAGGATGTTCTGGCCCGGATCGACCGGTTTATT---GA   1175

BSNT_00986___   1176 A-AAAAACA-----AATAA   1188
                     | |||||||     |||||
RBAM_006110__   1176 ACAAAAACATGCTCAATAA   1194


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