Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00986 and RBAM_006110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_00986___ydhE.1.9828.seq
# -bsequence dna-align/RBAM_006110___ydhE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00986___ydhE-RBAM_006110___ydhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00986___ydhE-RBAM_006110___ydhE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00986___ydhE
# 2: RBAM_006110___ydhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1219
# Identity: 884/1219 (72.5%)
# Similarity: 884/1219 (72.5%)
# Gaps: 56/1219 ( 4.6%)
# Score: 3010.0
#
#
#=======================================
BSNT_00986___ 1 AT---GAAGACAGTAT--TGATTTTGAATTTTCCTGCGGAAGGCCATGTG 45
|| ||| ||| ||| ||||..|.||||||||.||.|||||.||.||.
RBAM_006110__ 1 ATGGCGAA-ACA-TATTCTGATGATCAATTTTCCCGCAGAAGGACACGTA 48
BSNT_00986___ 46 AATCCTACCTTAGGCATTACAAAAGCGTTTTCCGATAAGGGATATGATGT 95
||.||.||.||.||.||.|||||.||.||...|||...|||..||.|.||
RBAM_006110__ 49 AACCCGACATTGGGTATGACAAAGGCCTTCAGCGAACGGGGCGATCACGT 98
BSNT_00986___ 96 CCATTATATATCCACTGAAAAATATAAAAAACGATTAGAAGCAGCGGGAG 145
.||||||||.||.||.||||||||.||||...||.|.||||.||..||.|
RBAM_006110__ 99 TCATTATATCTCAACGGAAAAATACAAAAGCAGACTGGAAGGAGTAGGGG 148
BSNT_00986___ 146 CAACGGTCCATCTTCACCGGGATCTGCTGCGAACGACACCTATTCAT--- 192
|.|..||.|||||||||.|.||||||||..|||.||||||||||.||
RBAM_006110__ 149 CGAAAGTTCATCTTCACAGCGATCTGCTCAGAATGACACCTATTGATCCC 198
BSNT_00986___ 193 GTCGGTTCGCCCAATGGCATTCTTG-ATTTCGTGAAA-ATCCATATCAAA 240
|.|.||.||.|| |||||.|||| |||| |.||| .|.|||||||||
RBAM_006110__ 199 GGCAGTCCGTCC---GGCATACTTGCATTT--TTAAAGGTTCATATCAAA 243
BSNT_00986___ 241 ACGTCATTGGACATTTTACAGATTGT-CAAAGACTTATCTAAGAG--CAT 287
||||||.||||.||||||||.||||| ||..|.| |...|||| |||
RBAM_006110__ 244 ACGTCACTGGAGATTTTACATATTGTGCAGCGGC---TGGCAGAGGACAT 290
BSNT_00986___ 288 TCAATTTGATTTTGTTTATTATGATAAATTCGGCGCGGGGGAATTGGTAA 337
||||||.||....||.|||||||||||||||||.|||||.||..||||..
RBAM_006110__ 291 TCAATTCGACGCCGTCTATTATGATAAATTCGGTGCGGGAGAGCTGGTGC 340
BSNT_00986___ 338 GGGATTA-CTTAGATATTCCAGGAGTCTCTTCATCGGCGTCTTTCTTGTT 386
||||||| ||.| |.|||||.||..|||||||.||.||.||.|||.||||
RBAM_006110__ 341 GGGATTATCTCA-ACATTCCCGGCATCTCTTCTTCAGCATCCTTCCTGTT 389
BSNT_00986___ 387 TGGCGAGGAGCACCTGAAAATCCTGCCGCTGCATCCGGAGTCTGGAGCGC 436
....||.||.|..||||||||.||||||||.||||||||.||.||.|.||
RBAM_006110__ 390 CAATGAAGACCGTCTGAAAATACTGCCGCTCCATCCGGAATCGGGCGTGC 439
BSNT_00986___ 437 CGCTTGAATTGGATCA-AGAGTGCGAAGATCTTTTGGCAAAAATGAAAGA 485
||.||.|...||| || .||.||.|||||.||.|||||..|.||||||||
RBAM_006110__ 440 CGTTTCAGCCGGA-CAGGGAATGTGAAGAGCTGTTGGCCGAGATGAAAGA 488
BSNT_00986___ 486 AACGTACGGTGTTGCCCCGAAAAACCTGGTTCAATTCATGAACAATAAAG 535
.|..||||||||.|||||..|.|.|.||||||||||.||||||||.|.||
RBAM_006110__ 489 TAAATACGGTGTCGCCCCTGACAGCATGGTTCAATTTATGAACAACACAG 538
BSNT_00986___ 536 GGGAATTGAACGTAGTGTATACAAGCCGTTATTTTCAGCCAGAAAGTGAT 585
|.|||||||||||.||.|||||||||.|.|||||||||||.||||||||.
RBAM_006110__ 539 GTGAATTGAACGTCGTCTATACAAGCAGATATTTTCAGCCCGAAAGTGAG 588
BSNT_00986___ 586 CGTTTCGGGGATGAATGTCTGTTTATCGGGCCAAGCTTTCCAAAGAGAGC 635
...|||||.|||||.|.|.|.||||||||.||.||.|||||.||||||
RBAM_006110__ 589 ACATTCGGAGATGAGTATTTATTTATCGGTCCGAGTTTTCCGAAGAGA-- 636
BSNT_00986___ 636 GGAAAAAACG----GATTTCCCGATTGA-ACAGCTAAAAGATGAGAGTGT 680
|||...|| ||.||||||||||| .|| |||||..||||.|..||
RBAM_006110__ 637 --AAAGGGCGCGTCGACTTCCCGATTGACTCA-CTAAAGAATGAAAAAGT 683
BSNT_00986___ 681 CATTTATATTTCAATGGGGACTGTACTGGATCATACAGAGGATTTCTTCA 730
|||||||||.||||||||.||.||.||.|...|.||.||.|..||.||||
RBAM_006110__ 684 CATTTATATCTCAATGGGAACGGTGCTCGGGGACACGGAAGCGTTTTTCA 733
BSNT_00986___ 731 ACCTTTGTATTGATGCATTTTCAGGCTTTAACGGAAAAGTCGTCATCGCT 780
|.||.||.||.||.||.||.||||..|||.|.||||||||.|||||.||.
RBAM_006110__ 734 ATCTGTGCATAGACGCGTTCTCAGATTTTGAAGGAAAAGTTGTCATTGCC 783
BSNT_00986___ 781 GCCGGAGAAAAAGCGGACCTGACCAAATTAAAGCAGGCGCCGGAAAACTT 830
|||||.||||||||.||.|||.|.|||.|.||.|||||||||||||||||
RBAM_006110__ 784 GCCGGGGAAAAAGCCGATCTGTCGAAAATCAAACAGGCGCCGGAAAACTT 833
BSNT_00986___ 831 TATCATTGCTCCGTATGTCCCTCAGCTGGAAGTGCTGGAGCAATCGGATG 880
||||||.||.|||||.||.||.|||||.||||||||||||||..|.||.|
RBAM_006110__ 834 TATCATCGCCCCGTACGTGCCGCAGCTTGAAGTGCTGGAGCAGGCCGACG 883
BSNT_00986___ 881 TTTTCATTACACACGGCGGAATGAACAGCGTAAACGAAGGCATTCATT-T 929
|.||..|.||.||.||||||||||||||.|||||.||||||||||||| |
RBAM_006110__ 884 TGTTTGTCACGCATGGCGGAATGAACAGTGTAAATGAAGGCATTCATTAT 933
BSNT_00986___ 930 CAGCGTGCCACTGGTTGTCATGCCTCATGACAAGGATCAGCCGATGGTGG 979
|| .|||||.|||||.||.||.||.||.||.||.||||||||||||||.|
RBAM_006110__ 934 CA-AGTGCCGCTGGTCGTTATCCCGCACGATAAAGATCAGCCGATGGTTG 982
BSNT_00986___ 980 CGCAGCGTCTCTCTGAACTCCATGCAGGCTAT---GT-CATCTCTAAAGA 1025
|||..||.||..|||||.|..||||||||||| || || .|||||
RBAM_006110__ 983 CGCGCCGCCTGACTGAATTGGATGCAGGCTATACCGTGCA----AAAAGA 1028
BSNT_00986___ 1026 TGAAGTCAATGCCCAAATATTAAAACAGGCCGTAGATGAGGTTTTGCGCA 1075
||||||.|..||..|||...||||.|..||||..||.||.||..|||..|
RBAM_006110__ 1029 TGAAGTGAGCGCTGAAAAGGTAAAGCTTGCCGCGGAAGAAGTGCTGCATA 1078
BSNT_00986___ 1076 ACGATCAGTATATGGCAGGCATTAAAAAAATCAATCAAAGCTTCAAAGAA 1125
|||...|.||.|....|||||||.||...||.|||.|||||||.||||||
RBAM_006110__ 1079 ACGGAAAATACAAACAAGGCATTCAAGCCATTAATGAAAGCTTTAAAGAA 1128
BSNT_00986___ 1126 TGTATGGACATGGAAGAAGTGATGGAGCGGATTGATGAGTTGATTCGCCA 1175
||||.|||||||.|.||.||..|||..|||||.||...|||.||| .|
RBAM_006110__ 1129 TGTACGGACATGAAGGATGTTCTGGCCCGGATCGACCGGTTTATT---GA 1175
BSNT_00986___ 1176 A-AAAAACA-----AATAA 1188
| ||||||| |||||
RBAM_006110__ 1176 ACAAAAACATGCTCAATAA 1194
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