Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00983 and RBAM_006100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_00983___ydhC.1.9828.seq
# -bsequence dna-align/RBAM_006100___ydhC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00983___ydhC-RBAM_006100___ydhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00983___ydhC-RBAM_006100___ydhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00983___ydhC
# 2: RBAM_006100___ydhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 713
# Identity: 492/713 (69.0%)
# Similarity: 492/713 (69.0%)
# Gaps: 64/713 ( 9.0%)
# Score: 1575.0
#
#
#=======================================
BSNT_00983___ 1 ATGGACGATTTTAAATTAGATAAGCCGACTCCC-TACTACCTGCAATTTT 49
|||||..||||||||||||||||||| |.|||| ||.||.||||||||||
RBAM_006100__ 1 ATGGATAATTTTAAATTAGATAAGCC-AATCCCGTATTATCTGCAATTTT 49
BSNT_00983___ 50 ATAACCAGCTAAAAAAAATGATCTTCAACGGGACTTTTAAGCCTGGGGAA 99
||..|||..|.|||||||||||.||..||||||.||||||.||.||.|||
RBAM_006100__ 50 ATTCCCAATTGAAAAAAATGATATTTGACGGGATTTTTAAACCGGGTGAA 99
BSNT_00983___ 100 CGGATAAATGAAACACAGCTGGCGAAAAGCTTT-GGCGTCAGCCGCTCTC 148
|||.|.|||||.||.|||||||| .||.|.||| ||.||||||||.||.|
RBAM_006100__ 100 CGGCTGAATGAGACTCAGCTGGC-CAAGGATTTCGGAGTCAGCCGGTCGC 148
BSNT_00983___ 149 CGATAAGGGAAGCCATGCGATTGCTTGAGAAAGATGGTTTGTTAAAAGCG 198
||.|.||.|||||||||||..|.|||||.||.||.||..|..|.|..||.
RBAM_006100__ 149 CGGTCAGAGAAGCCATGCGGCTCCTTGAAAAGGACGGGCTTCTGACGGCA 198
BSNT_00983___ 199 GATGACCGAAATGGGTTT-TCGATCACGTCGTTAACGGCAAAAGATGTAG 247
||.||.|||||.||.||| || ||....|||||..|.|..||.|||||.|
RBAM_006100__ 199 GACGATCGAAACGGCTTTGTC-ATTTATTCGTTGTCCGTTAAGGATGTTG 247
BSNT_00983___ 248 ATGAGATTTATAAAATCAGAAT-TCCGCTGGAGCAGCTGGCAGTCGAATT 296
|.|||||||||||||||||||| ||...||.|.|| |||||.||||||.|
RBAM_006100__ 248 AAGAGATTTATAAAATCAGAATGTCACTTGAATCA-CTGGCGGTCGAACT 296
BSNT_00983___ 297 AGTCATAGACGAAGCGGACGAAGAAGAG-----CTGACCATACTCGAAAA 341
.||.||.||.|||||||..| |||| .||||| |..|.|||||
RBAM_006100__ 297 GGTTATCGATGAAGCGGCTG----AGAGTGAAATTGACC-TCATTGAAAA 341
BSNT_00983___ 342 ACAGCTTGAAGAAACAGAGAAAGCCATTCGCAA------CGGCACGGAAG 385
||||||....||.||.||..||||||| ||| ||.|| |||
RBAM_006100__ 342 ACAGCTGCGGGAGACGGAAGAAGCCAT---CAATAAAGGCGTCA---AAG 385
BSNT_00983___ 386 ATACGGAAATCATTCGTTTAAACCAAAAATTTCATGAGCTGCTGGTTGAT 435
|.||.||.||.|||...||||||.|....||||||..|||.||.||.|||
RBAM_006100__ 386 AGACTGAGATTATTTCCTTAAACGAGTCGTTTCATCGGCTCCTTGTGGAT 435
BSNT_00983___ 436 TTCAGCCATAACAGACATTTGAAAAATTTGCTTGAGCATGTAAATGACCT 485
|||||||..|||||.|...||...|...|||||||||||||.||||..||
RBAM_006100__ 436 TTCAGCCGCAACAGCCGGCTGGCCATGCTGCTTGAGCATGTCAATGTGCT 485
BSNT_00983___ 486 GATTCATTTTTGCAGAATTCTTAATTATACCGGCGACCACCGCGCAGAAA 535
||||||||||||||||.|||||||||.||..||.||..||||.||.|||.
RBAM_006100__ 486 GATTCATTTTTGCAGAGTTCTTAATTTTAAAGGAGATGACCGTGCGGAAG 535
BSNT_00983___ 536 CGATACTGCGTGAGCACCGCAGGATATTTGAAGAAGTGAAAAAG-----A 580
..||.||||.|||||||||.|...|.|||||||||.|.|||||| .
RBAM_006100__ 536 TTATTCTGCATGAGCACCGGAAAGTCTTTGAAGAAATAAAAAAGGGCGAC 585
BSNT_00983___ 581 AAAACAAAGAAGCAGCCAAACAACATGTGCTGGCTCATTTCAATCATGAC 630
|||||||| ||||...|||.||.||..||..|||.||||.|||||
RBAM_006100__ 586 AAAACAAA-----AGCCGTGCAATATATGACGGAGCATCTCAAGCATGA- 629
BSNT_00983___ 631 TG-TGAGCATTTGAA--GCATGTGCT------TGAAGAAGGTAAAGA-GA 670
|| .||.|||.|||| || ||||| .|||||| |.||| ||
RBAM_006100__ 630 TGAAGAACATCTGAAAGGC--GTGCTGAGAGCGGAAGAA---ACAGACGA 674
BSNT_00983___ 671 AT--TGA------ 675
|| |.|
RBAM_006100__ 675 ATCATCACGATAG 687
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