Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03867 and RBAM_006040

See Amino acid alignment / Visit BSNT_03867 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_03867___bltD.1.9828.seq
#    -bsequence dna-align/RBAM_006040___bltD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03867___bltD-RBAM_006040___bltD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03867___bltD-RBAM_006040___bltD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03867___bltD
# 2: RBAM_006040___bltD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 470
# Identity:     326/470 (69.4%)
# Similarity:   326/470 (69.4%)
# Gaps:          22/470 ( 4.7%)
# Score: 1036.0
# 
#
#=======================================

BSNT_03867___      1 ATGAGTATAAACATAAAAGCAGTAACTGATGATAATCGTGCTGCAATTCT     50
                     ||||..||..|.||.|.|.||||.||.||.||.||.|||||.|..||.||
RBAM_006040__      1 ATGACGATTGAAATCAGAACAGTCACGGAAGAAAACCGTGCCGATATACT     50

BSNT_03867___     51 TGATCTGCATGT------CAGCCAGAATCAATTATCATATATTGAATC--     92
                     .|..||.|||||      .|||||||.|      ||||.|||||||.|  
RBAM_006040__     51 GGCGCTTCATGTAAGGGAAAGCCAGACT------TCATTTATTGAAACCG     94

BSNT_03867___     93 TACAAAAGTATGTTTAGAGGATGCAAAAGAATGTCACTATTATAAACCTG    142
                     |..||.||  ||.|||.|.|||||..|.||.||.|...|||||.|.||.|
RBAM_006040__     95 TGGAAGAG--TGCTTACAAGATGCTGAGGATTGCCGGCATTATCAGCCGG    142

BSNT_03867___    143 TCGGGCTTTACTATGAA-GGAGATCTAGTCGGTTTTGCAATGTATGGATT    191
                     .|||.||||| |.|.|| ||.||..|.|||||.|||||.|||||.||||.
RBAM_006040__    143 CCGGTCTTTA-TGTTAACGGGGAATTGGTCGGCTTTGCTATGTACGGATG    191

BSNT_03867___    192 GTTTCCCGAGTATGATGAAGATAATAAAAACGGACGAGTCTGGCTTGACC    241
                     ||||||.||.||||||||.||.|||.|||||||..||||.||||||||||
RBAM_006040__    192 GTTTCCGGAATATGATGAGGAAAATGAAAACGGCAGAGTATGGCTTGACC    241

BSNT_03867___    242 GATTTTTTATTGACAAACACTACCAGGGAAAAGGATTAGGGAAGAAAATG    291
                     |.|||||||||||..|||.|||.||||||...|||||.||.|||....||
RBAM_006040__    242 GTTTTTTTATTGATGAACGCTATCAGGGACGGGGATTGGGCAAGCTGTTG    291

BSNT_03867___    292 CTTAAAGCCCTCATTCAGCACCTTGCT-GAGCTATATAAATGCAAGA-GA    339
                     |||.|.|||||.||.|..||.||.|.| || .|||||.|.||| ||| |.
RBAM_006040__    292 CTTGATGCCCTTATCCGCCATCTCGTTCGA-ATATATGATTGC-AGACGG    339

BSNT_03867___    340 ATTTATTTAAGTATATTTGAAAATAATATTCATGCTATACGCCTTTATCA    389
                     |||||||||||..|.||||||.||||..|.||.||..|.||.||||||||
RBAM_006040__    340 ATTTATTTAAGCCTGTTTGAAGATAACGTCCACGCATTGCGGCTTTATCA    389

BSNT_03867___    390 AAGGTTTGGTTTTCAATTTAATGGTGAACTCGACTTTAATGGTGAGAAGG    439
                     ||..||.||.||...|||.|||||.||.||.||||..||.||.||.||.|
RBAM_006040__    390 AAAATTCGGCTTCTTATTCAATGGAGAGCTGGACTCAAACGGGGAAAAAG    439

BSNT_03867___    440 TAATGGTAAAAGAGCTATAG    459
                     |.|||||.||||||||.||.
RBAM_006040__    440 TGATGGTGAAAGAGCTGTAA    459


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