Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03073 and RBAM_005970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03073___yoaA.1.9828.seq
# -bsequence dna-align/RBAM_005970___ynaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03073___yoaA-RBAM_005970___ynaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03073___yoaA-RBAM_005970___ynaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03073___yoaA
# 2: RBAM_005970___ynaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 676
# Identity: 297/676 (43.9%)
# Similarity: 297/676 (43.9%)
# Gaps: 290/676 (42.9%)
# Score: 480.5
#
#
#=======================================
BSNT_03073___ 1 ATGTTTCCTATATTAGAAACGGATCGGCTTACACTTAGGCAAATCACTGA 50
||| .||||.| ||||.||..||||.|.|.||.||..|.| |||
RBAM_005970__ 1 ATG-----AATATCA-AAACTGACAGGCTCATAATTCGGACATT---TGA 41
BSNT_03073___ 51 TCAGGATGCGGAAGCCATT-----------TTTGCTTGTTTCTCAAA--C 87
.| |||||| ||| |.|||.|....|||||| |
RBAM_005970__ 42 AC------CGGAAG--ATTGGCAGGATGTCTATGCGTACACCTCAAATCC 83
BSNT_03073___ 88 GATGAGGTGACACGCTATTATGGGCTTGAAAACATGGAATCTATAGAACA 137
|| ||| .||||.|||.||||..|.|
RBAM_005970__ 84 GA-----------------ATG---------TCATGAAATATATACCAGA 107
BSNT_03073___ 138 GG----CCATTT--CAATGA-----TT--CAAA--CGTTTGCTGCCCTCT 172
|| | ||| |.|.|| || .||| || ||.|||
RBAM_005970__ 108 GGGTGTC--TTTACCGAAGAAGATGTTAGGAAATTCG-TTACTG------ 148
BSNT_03073___ 173 ATCAAGAAAAAC-GCGGTATACGGTG--GGGA-------------ATTGA 206
||||| |||||..|| .|| |||| |||||
RBAM_005970__ 149 -------AAAACAGCGGTGAAC-ATGCCGGGAAGTTTCCCGTTTTATTGA 190
BSNT_03073___ 207 AAGACGGGACACTAAAGAAC--TGATCGG-AACAATAGGC----TTTCAC 249
|.||.| |.|.||| |.||.|| .|||.| || |||||
RBAM_005970__ 191 AGGATG-------AGAAAACGGTCATTGGCCACATT--GCTTTTTTTCA- 230
BSNT_03073___ 250 G--CTCTGGCCCAAAAGCATAGGCGCGCGGAGATCGGTTATGAAA----- 292
| .|.|||| .|.||||.| |||||||
RBAM_005970__ 231 GTATTTTGGC----GATCATACG---------------TATGAAATCGGC 261
BSNT_03073___ 293 --------TCATCCCGGAGCAT----TGGCGAAACGGATTTGCATCAGAA 330
||| |||||| || .||| ||.||||.|||.|||||.
RBAM_005970__ 262 TGGGTGTTTCA-CCCGGA--ATACCAGGGC--AAAGGATATGCTTCAGAG 306
BSNT_03073___ 331 GTCATTTCAAAGGTCGTATCTTACGGATTTTCTGC---CCTTGGACTG-- 375
| ||| .|| ||.|| |||
RBAM_005970__ 307 G----------------------CGG------CGCGCGCCGTG--CTGGC 326
BSNT_03073___ 376 --TCGCGTATTGGCGCAGTTGTATTTACCGCTAATGAAGCAT---CAAAT 420
|||.|| ||..| .||.||.|.|||| |..|.|.||| .|.||
RBAM_005970__ 327 ATTCGGGT-TTAAC-AAGATGAAATTAC----ACCGGATCATTGCGACAT 370
BSNT_03073___ 421 CGTCTGCTTCTAAAAATGGGTTTTCA-----------AAAA--------- 450
|||.||....|||.||||.||..|| ||||
RBAM_005970__ 371 -GTCAGCCGGAAAACATGGCTTCGCACCGGGTGATGGAAAAGATCGGGAT 419
BSNT_03073___ 451 -------GAAGGC-GTTTTAAGACAGTACATGTATCAAAATGGGATTCCA 492
|||||| .|||||| ||||| |.|||||.
RBAM_005970__ 420 GAGACGGGAAGGCTTTTTTAA---------------AAAAT-GCATTCCC 453
BSNT_03073___ 493 TATGATACA--AATG------TGTACTCTATTGTG-------AAACCAAG 527
.|||||| | |||| ||.|...||||.|| |.|..|||
RBAM_005970__ 454 CATGATA-ATGAATGGTGGGATGAATATTATTATGCCGTTTTAGAAGAAG 502
BSNT_03073___ 528 AGAATGA------------------- 534
||...||
RBAM_005970__ 503 AGTGGGAAGCCTCCAACCTGGAATAA 528
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