Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00934 and RBAM_005940
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_00934___ydfJ.1.9828.seq
# -bsequence dna-align/RBAM_005940___ydfJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00934___ydfJ-RBAM_005940___ydfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00934___ydfJ-RBAM_005940___ydfJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00934___ydfJ
# 2: RBAM_005940___ydfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2201
# Identity: 1567/2201 (71.2%)
# Similarity: 1567/2201 (71.2%)
# Gaps: 181/2201 ( 8.2%)
# Score: 5777.5
#
#
#=======================================
BSNT_00934___ 0 -------------------------------------------------- 0
RBAM_005940__ 1 ATGTCTGGTTTTTTATATAAATTAGGGGGATGGTCTGCCCGCAATCGATT 50
BSNT_00934___ 0 -------------------------------------------------- 0
RBAM_005940__ 51 AAAAATGATCAGTGCGTGGCTCGTGATACTGATCGCTTCGGTTGTGATCG 100
BSNT_00934___ 1 --------TTGAAACCAAGTTTTTCTGAGGATATGTCCATACCTGACACA 42
||.|||||...||||||||||||||||||.||.||.||||||
RBAM_005940__ 101 CCATCTCGTTAAAACCTGCTTTTTCTGAGGATATGTCAATTCCCGACACA 150
BSNT_00934___ 43 CCTTCGGAAAAAGCGATGGATGTGATTCAAAAAGAATTTCCTCACGGTCC 92
|||||.|||||.|||||||||.|.|||||||||||||||.|..|.|||||
RBAM_005940__ 151 CCTTCTGAAAAGGCGATGGATATCATTCAAAAAGAATTTTCAAAGGGTCC 200
BSNT_00934___ 93 TGATAAAGGGAGCATACGGGTTATTTTCGGTGCTGGTGATGGGGAGAAAC 142
.||||||||.||||||||||||||||||||.||||..||.|||.|||||.
RBAM_005940__ 201 CGATAAAGGAAGCATACGGGTTATTTTCGGAGCTGAAGACGGGAAGAAAT 250
BSNT_00934___ 143 TTACTGGGAAGCCAGCAAAAAAAGCAATAGAAGATACGCTCAAAGAA-AT 191
|.||....||.||.|.||||.||||..|.|||||.|| .|.|||||| ||
RBAM_005940__ 251 TGACGTCAAAACCGGAAAAACAAGCGGTTGAAGAGAC-ATTAAAGAAGAT 299
BSNT_00934___ 192 CAGTAAA--GATGATTCTGTTGACTCGATTGCAAGTCCTTTTGTGACAGG 239
|| ||| |||.||||.||.|..|||||||||||||||||||.||||||
RBAM_005940__ 300 CA--AAACCGATCATTCAGTCGCTTCGATTGCAAGTCCTTTTGAGACAGG 347
BSNT_00934___ 240 GACAATCGCGAAAGATGGCACAGTTGCCTATGCTGATATCAAGTATAAAT 289
.||.||..|.|||||.||..||||.||.|||||.|||.|...|||.|||.
RBAM_005940__ 348 AACCATTTCTAAAGACGGATCAGTGGCGTATGCCGATGTGTCGTACAAAA 397
BSNT_00934___ 290 CATCAGCAGATGATATAAAGGATTATTCTATCAAACACTTAAAAGACAGT 339
.|.|.||.|||||.||.|.||||...|||.|...|||..|.|||.|||||
RBAM_005940__ 398 AAGCGGCGGATGACATTACGGATGCGTCTGTTTCACATATGAAACACAGT 447
BSNT_00934___ 340 TTGAAACTG------GTTGATGATGAAGGATTGCAAACTGAGCTAAGCGG 383
||| |..|..||..|.||..||||.||.|||||.|||||
RBAM_005940__ 448 ------CTGTCCGCCGCCGGAGACAAGGGCCTGCAGACGGAGCTCAGCGG 491
BSNT_00934___ 384 AGATGTACCGGGAGCCGAGATGGAGATAGGCAGTGTCTCTGAAATTGTCG 433
.|||||.|||||.||||...|.||.||.|||.||||.|||||||||||||
RBAM_005940__ 492 CGATGTGCCGGGGGCCGGTGTTGAAATCGGCGGTGTATCTGAAATTGTCG 541
BSNT_00934___ 434 GCATTATCTTGGCTTTTGTCGTTTTAGCCATTACATTGGGTTCTTTATTA 483
||.||.|..||||.||.||||||.|.||||||||.||.|||||.|||.|.
RBAM_005940__ 542 GCGTTGTGCTGGCATTCGTCGTTCTGGCCATTACGTTTGGTTCATTAGTC 591
BSNT_00934___ 484 ATAGCAGGTTTGCCGATTTTAACTGCACTGATTGGTTTAGGTGTAAGTAT 533
||.||.||..|.||||||.|.||.||.||||||||.|||||||||||.||
RBAM_005940__ 592 ATCGCGGGGCTTCCGATTGTCACGGCCCTGATTGGGTTAGGTGTAAGCAT 641
BSNT_00934___ 534 TGGACTGGTTTTGATTGGGACACAAGTATTT--GATATTGCTTCCGTCAG 581
.|..|||...||.|||||||||||..|.||| |||| ||.||.|||||
RBAM_005940__ 642 CGCGCTGACGTTAATTGGGACACAGTTCTTTACGATA--GCCTCGGTCAG 689
BSNT_00934___ 582 TCTTTCATTAGCCGGAATGATTGGCCTTGCTGTTGGTATTGATTATGCTT 631
|||.||||||.||||||||||.||.||.||.||.||.|||||||||||..
RBAM_005940__ 690 TCTCTCATTATCCGGAATGATCGGACTGGCCGTCGGAATTGATTATGCGC 739
BSNT_00934___ 632 TATTTATTTTTACGAAACACCGCCAGTTTTTAGGCGAAGGCATACAAAAG 681
|.|||||.||||||||.||.||.||||||||.||||||||..|||||||.
RBAM_005940__ 740 TGTTTATCTTTACGAAGCATCGTCAGTTTTTGGGCGAAGGTGTACAAAAA 789
BSNT_00934___ 682 AATGAATCAATTGCGAGAGCCGTGGGAACAGCGGGAAGCGCAGTCGTTTT 731
||||||||.||.||||.|||||.||||||.||.||.|||||.||||||||
RBAM_005940__ 790 AATGAATCGATCGCGAAAGCCGCGGGAACGGCAGGCAGCGCCGTCGTTTT 839
BSNT_00934___ 732 TGCCGGACTTACTGTTATCGTTGCACTTTGCGGATTAACTGTCGTTAACA 781
|||.|||||.||.||.|||||.||.|||||||||||.|||||.||...||
RBAM_005940__ 840 TGCGGGACTGACCGTGATCGTCGCGCTTTGCGGATTGACTGTTGTCGGCA 889
BSNT_00934___ 782 TTCCTTTTATGTCTGCGATGGGGCTGACAGCAGGGCTTAGTGTACTGATG 831
|||||||.||||||||.||||||.||||.||.|..||.|||||.||||||
RBAM_005940__ 890 TTCCTTTCATGTCTGCCATGGGGTTGACTGCGGCACTCAGTGTGCTGATG 939
BSNT_00934___ 832 GCTGTTTTGGCTTCCATCACACTTGTGCCTGCGGTCTTATCGATTGCAGG 881
|||||.|||||.||..|.||.||.|||||||||||.||.||.||.||.||
RBAM_005940__ 940 GCTGTATTGGCATCAGTAACGCTGGTGCCTGCGGTGTTGTCAATCGCGGG 989
BSNT_00934___ 882 GAAGCGGATGATTCCGAAATCAAACAAGAAAATAGAAAAACAAAGCACTG 931
.||.||||||||||||||||||.|||||||.|.||||||..|||||.|.|
RBAM_005940__ 990 AAAACGGATGATTCCGAAATCATACAAGAAGAAAGAAAAGAAAAGCGCCG 1039
BSNT_00934___ 932 AAACAAATGTCTGGGGACGCTTTGTCACCAAAAATCCTATCATTCTAAGT 981
..||.||||.||||||.|||||.||.||.||.||.|||||..|..||||.
RBAM_005940__ 1040 GCACGAATGGCTGGGGGCGCTTCGTTACAAAGAAGCCTATTCTGTTAAGC 1089
BSNT_00934___ 982 GTATGCAGCATTCTGATTTTGATCGTCATTAGTATCCCATCTATGCATTT 1031
.|.|.||||||..|..||||...||||||.|||.|.||..|.||||||||
RBAM_005940__ 1090 ATTTTCAGCATCATTCTTTTAGCCGTCATCAGTCTGCCGGCCATGCATTT 1139
BSNT_00934___ 1032 GGAACTGGGCTTGCCTGATGCTGGGATGAAAGCTAAGGATAATCCGGATC 1081
.||.|||||..||||||||||.||.||||||||.||.||.|..|||||||
RBAM_005940__ 1140 AGAGCTGGGGCTGCCTGATGCGGGAATGAAAGCGAAAGACAGCCCGGATC 1189
BSNT_00934___ 1082 GCCGGGCATATG-CCTTGCTTG-CCGAAGGCTTTGGAGAAGGATTTAATG 1129
||||.||.|||| .||| ||| |..||||.||.||.|||||.|||||.|
RBAM_005940__ 1190 GCCGCGCCTATGATCTT--TTGTCTAAAGGATTCGGCGAAGGCTTTAACG 1237
BSNT_00934___ 1130 GCCAATTAACAATCGTAGCGGATGCCACAAATGCTACA----GAAAATAA 1175
||.|.||.|||||.||.||.||||| .|||.|...|| |||.|.||
RBAM_005940__ 1238 GCAAGTTGACAATTGTTGCCGATGC--AAAAGGGGTCAAGGGGAACAAAA 1285
BSNT_00934___ 1176 GGCGGAGGC-TTTCGCAGATGCAGTGAAAGAAATAAAGGGCTTAGACCAT 1224
| .||.|| |||| .||..||.|||||||||||.||||.|||..||.||
RBAM_005940__ 1286 G--TGAAGCATTTC-AAGGCGCCGTGAAAGAAATGAAGGACTTGCACAAT 1332
BSNT_00934___ 1225 GTAGCAAGTGTCACCCCTGCAATGCCTAATAAAGAAGGGAACTTTGCCAT 1274
||.||.||.|||||.|||||.|||||.||..||.|||||.|||.||||||
RBAM_005940__ 1333 GTGGCGAGCGTCACACCTGCCATGCCGAACGAAAAAGGGGACTATGCCAT 1382
BSNT_00934___ 1275 CATTACGGTCGTTCCAGAAACAGGTCCAAATGATGTCACAACGAAAGATT 1324
||||||||..||.||.|||||.||.||.||||||....||||||||||.|
RBAM_005940__ 1383 CATTACGGCAGTGCCTGAAACCGGGCCGAATGATAAGGCAACGAAAGAGT 1432
BSNT_00934___ 1325 TGGTACACGATGTACGCAGTTTATCAGATAAAAACGGAGTAGAT----TT 1370
|.||.||.|||.||||.|....||||||.|||||||| .|| .|
RBAM_005940__ 1433 TAGTGCAGGATATACGGAAACGATCAGACAAAAACGG----CATCCGCCT 1478
BSNT_00934___ 1371 GCTTGTTACTGGATCGACTGCAGTGAATATTGACATTTCAGATCGCCTCA 1420
|||.||.||.||.||.||.||.|||||.|||||.||||||||.||..|.|
RBAM_005940__ 1479 GCTCGTCACCGGGTCAACCGCGGTGAACATTGATATTTCAGACCGGTTAA 1528
BSNT_00934___ 1421 ATGATGCGATACCGGTGTTTGCTGTACTTATTGTGGGCTTTGCGTTTGTA 1470
|.|||||.||.||||..||.||..|.||.|||||.||.||||||||||||
RBAM_005940__ 1529 ACGATGCCATTCCGGAATTCGCCATTCTCATTGTCGGGTTTGCGTTTGTA 1578
BSNT_00934___ 1471 TTGCTGACCATCGTTTTCCGTTCGCTGCTTGTGCCGCTTGTTGCTGTTGC 1520
|||||||||.|.||||||||.|||||.||.||||||||||..|||||.|.
RBAM_005940__ 1579 TTGCTGACCGTTGTTTTCCGCTCGCTTCTCGTGCCGCTTGCCGCTGTCGT 1628
BSNT_00934___ 1521 AGGTTTCATGTTGACGATGACAGCCACTCTTGGGATTTGTGTATTTGTCT 1570
.||.||..||.||||||||||.||.||.||.||..|.|..|||||.|||.
RBAM_005940__ 1629 CGGCTTTTTGCTGACGATGACTGCTACACTCGGCTTATCGGTATTCGTCC 1678
BSNT_00934___ 1571 TGCAAGACGGGAATCTCATCGACTTTTTCAAAATACCTGAAAAAGGGCCG 1620
||||.||.||.|||.|||.||.|||..|||..||.||.||||||||.|||
RBAM_005940__ 1679 TGCAGGATGGAAATTTCACCGGCTTGCTCAGCATTCCGGAAAAAGGTCCG 1728
BSNT_00934___ 1621 ATACTCGCGTTCCTGCCGATTTTATCGATTGGGATTCTGTTCGGGTTAGC 1670
||.|||||.||||||||.|||||..||||.||.|||||.|||||..|.||
RBAM_005940__ 1729 ATTCTCGCCTTCCTGCCTATTTTGGCGATCGGTATTCTTTTCGGACTGGC 1778
BSNT_00934___ 1671 CATGGATTATCAAGTATTCCTTGTCAGCAGAATGCGTGAAGAATATGTAA 1720
.|||||||||||||||||||||||||||||||||.|.|||||||||||.|
RBAM_005940__ 1779 GATGGATTATCAAGTATTCCTTGTCAGCAGAATGAGAGAAGAATATGTCA 1828
BSNT_00934___ 1721 AAACAAAGAATCCAGTACAAGCCATTCAGGCTGGATTAAAACACAGTGGT 1770
|||||||.|||||.||||||||||||||.||.|||||.|||||.||.||.
RBAM_005940__ 1829 AAACAAAAAATCCGGTACAAGCCATTCATGCCGGATTGAAACATAGCGGA 1878
BSNT_00934___ 1771 CCTGTTGTTACAGCAGCCGGCTTGATCATGATCTTCGTTTTTGCAGGATT 1820
|||||.||.|||||.||.||..||||||||||.|||||.|||||.|||||
RBAM_005940__ 1879 CCTGTCGTAACAGCGGCGGGACTGATCATGATTTTCGTCTTTGCGGGATT 1928
BSNT_00934___ 1821 TATCTTTGCAGGCGAAGCTTCTATTAAAGCCAACGGATTAGCACTTTCCT 1870
.||||||||.||.||||||.|.||.|||.|||..||.||.|||.|..|||
RBAM_005940__ 1929 CATCTTTGCGGGAGAAGCTACGATCAAATCCATGGGCTTGGCAATGACCT 1978
BSNT_00934___ 1871 TTGGTGTGCTCTTTGATGCCTTTATTGTAAGAATGACACTGATTCCAAGT 1920
|.||||||||.||||||||.||.||||||||||||||..|.|||||.|||
RBAM_005940__ 1979 TCGGTGTGCTTTTTGATGCGTTCATTGTAAGAATGACCATTATTCCGAGT 2028
BSNT_00934___ 1921 GTCATGAAGCTGATGGGGAATGCAGCCTGGTATTTGCCGAAATGGTTAGA 1970
|||||||||||||||||..||||.||||||||.||||||||.|||.|.||
RBAM_005940__ 2029 GTCATGAAGCTGATGGGACATGCGGCCTGGTACTTGCCGAAGTGGCTGGA 2078
BSNT_00934___ 1971 CAAGATTATTCCGAACGTGGATATAGAAGGGCATCAACTGACA-AAGGAA 2019
.||.||.|||||||||||||||||.|||||.|||.|.|||||| ||||.|
RBAM_005940__ 2079 TAAAATCATTCCGAACGTGGATATCGAAGGCCATAAGCTGACACAAGGCA 2128
BSNT_00934___ 2020 ATACAGCC--AGAAATAGATCATGAACAA-AAGAAACAAATCAGTGTGTA 2066
|.||| || ||||| |..|||.|| ||
RBAM_005940__ 2129 AAACA-CCGGAGAAA-----CCGGAAGAATAA------------------ 2154
BSNT_00934___ 2067 A 2067
RBAM_005940__ 2154 - 2154
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