Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00932 and RBAM_005930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_00932___ydfI.1.9828.seq
# -bsequence dna-align/RBAM_005930___ydfI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00932___ydfI-RBAM_005930___ydfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00932___ydfI-RBAM_005930___ydfI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00932___ydfI
# 2: RBAM_005930___ydfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 647
# Identity: 497/647 (76.8%)
# Similarity: 497/647 (76.8%)
# Gaps: 16/647 ( 2.5%)
# Score: 1895.5
#
#
#=======================================
BSNT_00932___ 1 ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCT 50
|||.||||.||.|||||.|..|||||||||||||||||.||.||||||||
RBAM_005930__ 1 ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCT 50
BSNT_00932___ 51 GAAGCTTTTAATTGAAACGAATGATCAATACACCATTATAGGAGAGGCGG 100
|||||||||.||.|||||.|||||.||.||||||||.|..||||||||||
RBAM_005930__ 51 GAAGCTTTTGATAGAAACAAATGACCATTACACCATAACGGGAGAGGCGG 100
BSNT_00932___ 101 AAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATC 150
||||.||.|||..|||.|||||.||.|||||.|||.||.|.||.|||.||
RBAM_005930__ 101 AAAACGGGAAAACCGCCGTCCGCCTCGCAGAGGAACTAAAGCCCGATGTC 150
BSNT_00932___ 151 ATTCTGATGGATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAA 200
|||||.||||||.||||.||||||||.|||||||||.|.||.||||||||
RBAM_005930__ 151 ATTCTCATGGATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAA 200
BSNT_00932___ 201 ACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTGACTACATATA 250
|||.||||||||..|....|||...||.||.|||||||||||.||.||||
RBAM_005930__ 201 ACAGATAAAAGAGCATTCTGATGTGCCGATTATTATTTTGACGACCTATA 250
BSNT_00932___ 251 ATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATAT 300
||||||||||..|.|||||.|||||.|||||||.|||.|||||.||.|||
RBAM_005930__ 251 ATGAAGATCATCTGATGATAGAAGGCATTGAATCAGGCGCGAACGGTTAT 300
BSNT_00932___ 301 CTGTTAAAGGATACGAGTTCAGAAACCCTTTTTCACACAATGGATGCAGC 350
|||.|.||.||.||.||.|||||||||.|.|||||.||.||||||||.||
RBAM_005930__ 301 CTGCTGAAAGACACAAGCTCAGAAACCTTATTTCATACGATGGATGCGGC 350
BSNT_00932___ 351 GATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG 400
|.||||.|||.|.|||||..|||||||.||.|||.|....|||.|.|..|
RBAM_005930__ 351 GGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG 400
BSNT_00932___ 401 AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACG 450
||||..||.|.||.||| |.|||.|| ||.|||.||.|||||||||
RBAM_005930__ 401 AAATGAAAATGGAACGG--GCAAATGC----CAATGAAACACAGCTGACG 444
BSNT_00932___ 451 GAAAAGGAAGTCATTGTTCTAAAAGCAATTGCTAAAGGTCTTAAAAGCAA 500
||.||||||.||||.||||||.||||..||||..||||.|.|||||||||
RBAM_005930__ 445 GACAAGGAAATCATAGTTCTAGAAGCCGTTGCGCAAGGACATAAAAGCAA 494
BSNT_00932___ 501 AGCGATTGCCTTTGATTT-GGACGTCTCTGAGCGAACAGTAAAGTCCAGA 549
||||||.|||||.||||| ||| .||||.|||||.||.|||||..|.|||
RBAM_005930__ 495 AGCGATCGCCTTCGATTTAGGA-ATCTCAGAGCGGACGGTAAAAGCGAGA 543
BSNT_00932___ 550 TTAACGTCCATTTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGT 599
|||||.||.|||||.||.|||||||||||..||||..|.||.||.||.||
RBAM_005930__ 544 TTAACATCGATTTATAACAAATTAGGCGCTGATTCGCGGACGGAAGCCGT 593
BSNT_00932___ 600 AACGATTGCCATGCAAAAAGGTATTCTGA----CAATAGACAACTAA 642
.||.|||||||||||||||||.||||||| .||||.|.||
RBAM_005930__ 594 CACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA---- 636
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