Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00931 and RBAM_005920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_00931___ydfH.1.9828.seq
# -bsequence dna-align/RBAM_005920___ydfH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00931___ydfH-RBAM_005920___ydfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00931___ydfH-RBAM_005920___ydfH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00931___ydfH
# 2: RBAM_005920___ydfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1253
# Identity: 846/1253 (67.5%)
# Similarity: 846/1253 (67.5%)
# Gaps: 124/1253 ( 9.9%)
# Score: 2874.5
#
#
#=======================================
BSNT_00931___ 0 -------------------------------------------------- 0
RBAM_005920__ 1 TTGTTTGGTACAAAACATCAAGAAGACTATGTCTCCCGTGACAGACGTTC 50
BSNT_00931___ 1 -------ATGCTTGCACTCAGAGTGCCGGGCCTGGCTTTTATTCTTATGA 43
||||||||.||..|.|||||.||.|||||.||||||.|.|||.
RBAM_005920__ 51 ATTGCATATGCTTGCGCTTCGGGTGCCCGGTCTGGCGTTTATTTTAATGG 100
BSNT_00931___ 44 TCTAT-----AT-AGCCTCTATCGTGCTGCAATTTGTTTCTGGGGGCTGG 87
|.||| || ||.|||| .||||.|...|||.||...|||||
RBAM_005920__ 101 TATATGCCGCATCAGTCTCT------TTGCAGTACATTTATGAAAGCTGG 144
BSNT_00931___ 88 TCCATTTTATTGCT----TTATGCGTTTACCATATTAATCGCCATTTTTG 133
.|..||||.||||| ||| ||.||.|||||.||||.|||||||.
RBAM_005920__ 145 ACGGTTTTTTTGCTGCTGTTA----TTCACAATATTGATCGTCATTTTTA 190
BSNT_00931___ 134 CTTTGCTTCATTGGCACTCATATCGCTGGGTTAAGAAAAGAGTGATTCTG 183
|..||||.||.|||||.||..||||||||||.|||||||.|..|.||||.
RBAM_005920__ 191 CCGTGCTGCACTGGCATTCCCATCGCTGGGTGAAGAAAAAAACGTTTCTT 240
BSNT_00931___ 184 TATTTCGTGGTACAAGGTTTGATCACCTTTGCACTTGCTAATCTCATGAC 233
||||||.|..||||.||.||.||||..|.|.||...|||||..|.|||||
RBAM_005920__ 241 TATTTCATCATACAGGGATTTATCATATATACATCGGCTAACTTGATGAC 290
BSNT_00931___ 234 TGGCTTCTTTAT---ACTTGTCATTATCGGCCTTTATGCATTTTTAATTG 280
.|||..||.||| ..||||| .||||.||.|||||.||||||||.|
RBAM_005920__ 291 CGGCGGCTATATTGCGGTTGTC---GTCGGTCTCTATGCCTTTTTAATCG 337
BSNT_00931___ 281 GACAGATTTTAGGAATGGCAGACAGAAGAAGGACTTTTCTCATTCTTTAT 330
|.||||||.|.||||||||.||.|...|||..||..|.|||||.||.|||
RBAM_005920__ 338 GGCAGATTATCGGAATGGCGGATAAGGGAAAAACGCTGCTCATACTCTAT 387
BSNT_00931___ 331 CTATTGCTGCTGCTGGTCATAA---------ATTCGGCGTATCACCTTCA 371
||.||..|..|..||..||||| |...||.|.|||..|.|||
RBAM_005920__ 388 CTGTTCATTTTAATGTCCATAACAGCTTTGCACGAGGAGCATCCGCATCA 437
BSNT_00931___ 372 TAAAGGTGAAGTTTTGCATTTTATTGTTATTGCTGGGCCAATCATGATTG 421
| .|..|||.|||.||.|||||.||.|..||.||||||||.|
RBAM_005920__ 438 T---------CTGCTGCGTTTCATCGTTATCGCCGCTCCCATCATGATCG 478
BSNT_00931___ 422 TCATCATCACTTATGCCGCAACATTTTTTGCCCAAGTCGATGAAAAAATA 471
|.||.|||||.|||||.||.||||||||.||.|||||.||||||||||||
RBAM_005920__ 479 TGATTATCACGTATGCGGCCACATTTTTCGCGCAAGTTGATGAAAAAATA 528
BSNT_00931___ 472 AAAGCTCAATTGACTCTTGAAAGGCTGGAGCTGGCTCATCAGCAGGTAGA 521
|||.|.||..||||.|||||||...|.|||||.|||||.|.|||.||..|
RBAM_005920__ 529 AAAACACAGATGACGCTTGAAAAATTAGAGCTCGCTCACCGGCAAGTGAA 578
BSNT_00931___ 522 ACAGCTGACGCTGCAGAACGAAAGACAGCGGATGGCCCGAGATTTACACG 571
||||||||||||.|||||.|||||.|||||||||||..||||.||.||||
RBAM_005920__ 579 ACAGCTGACGCTTCAGAATGAAAGGCAGCGGATGGCGAGAGACTTGCACG 628
BSNT_00931___ 572 ATACGCTTGCTCAAGGTCTTGTCAGTTTAAATATGCAGCTGGATGCGATT 621
||||||||||.|||||..|.|||||.||..||||||||||.||.|||.|.
RBAM_005920__ 629 ATACGCTTGCCCAAGGATTGGTCAGCTTGCATATGCAGCTTGAAGCGGTG 678
BSNT_00931___ 622 CATGTTCATCTCGCCAAAGGCAACACAGAGAGAGCGAAGGAAATCATACA 671
|||||||||||..|.||.||.|||||.||.||||||||.||.||||| ||
RBAM_005920__ 679 CATGTTCATCTTTCAAAGGGTAACACTGACAGAGCGAAAGACATCAT-CA 727
BSNT_00931___ 672 -ACAATCGATGAAAAGAGTGAAAAGCACATTAGCTGATGCACGTTCAGCT 720
.||.||.|||.|.||||||||..|||||||.||||||||.||.||.||.
RBAM_005920__ 728 GCCAGTCAATGGACAGAGTGAAGGGCACATTGGCTGATGCGCGCTCGGCC 777
BSNT_00931___ 721 ATTGACGATCTCCGCAGAAAATCAGAAGAAATCGGTGTT-TTAAAAGAAA 769
||||||.|.||.|||||.|.|||||||||.||||| ||| ||||||||||
RBAM_005920__ 778 ATTGACAACCTTCGCAGCACATCAGAAGAGATCGG-GTTCTTAAAAGAAA 826
BSNT_00931___ 770 GAATTACCTCGCTAATGGATCATTTTATAG-AGTCGACAGGCATGGCTTG 818
|.||.||....|.|||..|.|||||||.|| ||.|..|.||| ||.||||
RBAM_005920__ 827 GCATCACTGAACAAATCAACCATTTTACAGAAGCCTCCGGGC-TGTCTTG 875
BSNT_00931___ 819 TTTATTAGATTACAGATTGCATCAGGTGCTGGATGTGCGTACAGCTGAAA 868
|||.|||||||||||..|||||||.|||||.||.||.|.|||.||.||.|
RBAM_005920__ 876 TTTTTTAGATTACAGCGTGCATCATGTGCTTGACGTTCATACGGCGGAGA 925
BSNT_00931___ 869 ACTGTTATTACATCATTGGAGAATGCATGACGAATGCGGCAAAGCATGCT 918
|.||..|||||||.||.||||||.||.||||.||.||.||.||||||||.
RBAM_005920__ 926 ATTGCCATTACATGATCGGAGAAGGCCTGACAAACGCCGCCAAGCATGCA 975
BSNT_00931___ 919 GAGGCGAAAACAA--TCTGGATATCCATTTGGGATGATGAAAAGGGAAGG 966
||.|| |||.|| |||||.|||||.|| .|.||.|||.|||||...
RBAM_005920__ 976 GAAGC--AAAGAATGTCTGGGTATCCGTT---CAGGAAGAAGAGGGACAA 1020
BSNT_00931___ 967 CTCCATTTAACAGTTAAGGATAACGGCAAGGGATTTAATGTTGAAAAAGG 1016
.|||...||||.||.||.|||.||||.||.||.|||.|||..|.||.||.
RBAM_005920__ 1021 ATCCGCATAACCGTCAAAGATGACGGGAAAGGCTTTGATGCCGGAACAGA 1070
BSNT_00931___ 1017 AAAGAAAAAGAGAGGACATTATGGGCTTCTTGGCATACAAGAACGCGTCA 1066
||.||.|||.||.||||||||.|||||.|||||.||||||||||||||
RBAM_005920__ 1071 AATGAGAAAAAGCGGACATTACGGGCTGCTTGGGATACAAGAACGCGT-- 1118
BSNT_00931___ 1067 GGGCAATA-----AATGGCCAATTCAATATCAAGAGTGCAAAATTGAAAG 1111
||||| ||.|||...|||..|||.|..||.||.|.||.....|
RBAM_005920__ 1119 ---CAATATGATGAACGGCACTTTCCGTATAACAAGCGCCAGATCAGCGG 1165
BSNT_00931___ 1112 GAACACAAATTGAGATCACTGTACCAATTCAGGGAGAGATGCAAGATGAA 1161
||||.|||||||||||||...||||||||||.||||||..|.||.|||.|
RBAM_005920__ 1166 GAACTCAAATTGAGATCATCATACCAATTCAAGGAGAGGCGGAACATGTA 1215
BSNT_00931___ 1162 TAA 1164
|||
RBAM_005920__ 1216 TAA 1218
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