Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00908 and RBAM_005860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_00908___ydeL.1.9828.seq
# -bsequence dna-align/RBAM_005860___ydeL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00908___ydeL-RBAM_005860___ydeL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00908___ydeL-RBAM_005860___ydeL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00908___ydeL
# 2: RBAM_005860___ydeL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1421
# Identity: 1107/1421 (77.9%)
# Similarity: 1107/1421 (77.9%)
# Gaps: 55/1421 ( 3.9%)
# Score: 4313.0
#
#
#=======================================
BSNT_00908___ 1 GTGCAAATGGATATCACGCCTTTTTTGAATAGAAATCTGGATAGTCCGCT 50
||||||||||||||.|||||.||||||.|||||||||.||||||
RBAM_005860__ 1 ------ATGGATATCACGCCATTTTTAAATAGAGATCTGGATATTCCGCT 44
BSNT_00908___ 51 TTATCAGCAGCTTTATCGGTATTTTAAAGAAAACATGCATCGGGGCCGTA 100
|||||||||||||||||||.|||||||.|||||.|||||||.||||||||
RBAM_005860__ 45 TTATCAGCAGCTTTATCGGCATTTTAAGGAAAATATGCATCAGGGCCGTA 94
BSNT_00908___ 101 TTCAAAAAGGAATGAAGCTTCCTTCAAAAAGACTCTTGGCGAATCAGCTT 150
|||..||||||.|||||||||||||||||||.||.|||.|.|.|||||||
RBAM_005860__ 95 TTCCTAAAGGACTGAAGCTTCCTTCAAAAAGGCTTTTGTCAAGTCAGCTT 144
BSNT_00908___ 151 TCCATCAGCCAAACGACTGTAGAACGTGCCTATGAACAGCTCGCTGCTGA 200
||||||||.||.||||||||.||.|||||||||||||||||.||.||.||
RBAM_005860__ 145 TCCATCAGTCAGACGACTGTGGAGCGTGCCTATGAACAGCTTGCCGCCGA 194
BSNT_00908___ 201 GGGCTATATTGTGAGCAAGCCAAGAAGCGGGTGGTTTGCTGATTATCATG 250
.|||||||||||.||||||||.||||||||.||||||||.|||| |||
RBAM_005860__ 195 AGGCTATATTGTCAGCAAGCCGAGAAGCGGATGGTTTGCCGATT---ATG 241
BSNT_00908___ 251 ATTCTGA-----TTTTGCTAATGATAGAATGCCAAGCACAACACCCATTC 295
|.||.|| |.| |||..|.||.|||..||.|..|.||..|||
RBAM_005860__ 242 ACTCGGACGCCGTCT-----ATGTGAAAAAGCCGGGCGCTTCGCCTGTTC 286
BSNT_00908___ 296 -AACAA----GAAGCAGAAGAAAATAAA----CAATGGATTGATTTTCAT 336
||||| |||| |||| | |||||||||||||||||.
RBAM_005860__ 287 AAACAAAGGCGAAG--GAAG-------ACCGCCAATGGATTGATTTTCAC 327
BSNT_00908___ 337 TATGGGAATGTAGATTCTTCTTACTTCCCTTTTTCCGCATGGCGAAAAAG 386
||.||.|.|||.|||.|..||.|.||.||||||||.||||||||.|||||
RBAM_005860__ 328 TACGGCACTGTGGATGCCGCTCATTTTCCTTTTTCGGCATGGCGCAAAAG 377
BSNT_00908___ 387 CATGGT--CAATAGCTTAGACCAATATGGACACGAGCTTTATCGGCCAGG 434
|||||| || ||||||||.|||||.||.||.|||||.||||||.|.||
RBAM_005860__ 378 CATGGTTGCA--AGCTTAGATCAATACGGGCATGAGCTGTATCGGTCCGG 425
BSNT_00908___ 435 ACATGTTTTAGGAGAGTTTGAGCTGAGAACACTCATTGCAGAGTACCTGT 484
..|||.|||.||.|||.||||.||||||||.||||||.|.||||||.|.|
RBAM_005860__ 426 GGATGATTTGGGCGAGCTTGAACTGAGAACGCTCATTTCGGAGTACTTAT 475
BSNT_00908___ 485 ATCAATCTCGGGGTGTTCATTGCGGCCCTGAACAAGTGATTATAGGTGCC 534
||||.||.||.||.||..|||||.|.||||||||||||||..|.||.|||
RBAM_005860__ 476 ATCAGTCGCGCGGGGTGAATTGCCGTCCTGAACAAGTGATAGTCGGCGCC 525
BSNT_00908___ 535 GGGAACCCTATTCTGCTGCAAATCTTGTGCCAAGTTTTTGAGCCGAATAT 584
|||||||||..|||..|||||||..|||||.||.|.|||||..|.|||.|
RBAM_005860__ 526 GGGAACCCTGCTCTTTTGCAAATGCTGTGCAAAATATTTGAATCAAATCT 575
BSNT_00908___ 585 TTCTATAGGGTATGAGGATCCTGGTTATCCAAGAGCACGCAAAATTTTTG 634
.||.||.||.|||||.|||||.||||||||.|||||..|..|.||||||.
RBAM_005860__ 576 ATCCATCGGATATGAAGATCCGGGTTATCCGAGAGCGAGGGAGATTTTTA 625
BSNT_00908___ 635 AAGCCAATCGCATGAATATTGTTCCGATACCAGTCGATGAGGAAGGAATC 684
|||||||||.||||||.||..||||||||||.||||||||.||||||.||
RBAM_005860__ 626 AAGCCAATCACATGAAGATCATTCCGATACCCGTCGATGATGAAGGAGTC 675
BSNT_00908___ 685 TGTATACAGAAGGTCAAAGAACAGCAGCCAAACCTTGTATATGTCACACC 734
|||||.|.||||.|.||.|||.|||.|||....||||||||||||||.||
RBAM_005860__ 676 TGTATCCGGAAGCTGAATGAAGAGCGGCCGCGTCTTGTATATGTCACGCC 725
BSNT_00908___ 735 TTCCCATCAATTTACGCTGGGAACCATAATGACAATAAACAGAAGAATTC 784
|||.||||||||||||.|.|||||.||.|||.|..||||||||||.||||
RBAM_005860__ 726 TTCTCATCAATTTACGTTAGGAACGATTATGCCGGTAAACAGAAGGATTC 775
BSNT_00908___ 785 AGCTGCTCAAATGGGC--AGCCGAAAATCAATCCTTTATCATAGAGGATG 832
|||||||.|||||||| || |||.|||||||.||.||.|||||.||||
RBAM_005860__ 776 AGCTGCTGAAATGGGCGAAG--GAACATCAATCGTTCATTATAGAAGATG 823
BSNT_00908___ 833 ATTATGACGGGGAATTTAGGTACACAGGACAGCCGGTTCCTTCTCTGCAA 882
||||||||||.|||||..|.|||||.||.||||||.|.||.||..||||.
RBAM_005860__ 824 ATTATGACGGTGAATTCCGATACACCGGCCAGCCGATCCCATCATTGCAG 873
BSNT_00908___ 883 GGGCTTGATCAGCATAACCGTGTCATTTATATGGGCACTTTTTCTAAGTC 932
|||||||||||||||.|||||||||||||||||||.||.|||||..|.||
RBAM_005860__ 874 GGGCTTGATCAGCATCACCGTGTCATTTATATGGGGACGTTTTCCCAATC 923
BSNT_00908___ 933 TCTTTTGCCCTCGCTGCGTATCAGCTATATGATTCTTCCTTCACCTCTT- 981
|||..|.||.||||||||.||||||||||||||||||||||..||.|||
RBAM_005860__ 924 TCTGCTTCCTTCGCTGCGCATCAGCTATATGATTCTTCCTTTGCCGCTTA 973
BSNT_00908___ 982 TTAAAAAAGG--GGCATGACATCACGTCATTATATAAGCAGACAGTGTCC 1029
||.||||||| || ||.|||.|.||.||||||||.|||||.||.|||
RBAM_005860__ 974 TTGAAAAAGGCAGG---GAAATCGCTTCTTTATATAAACAGACCGTCTCC 1020
BSNT_00908___ 1030 TGCCACAGTCAGCTAACCCTAGCTGAATTTATAAAAAATGGAGAGTGGCA 1079
||||||||||||||.||.||.|||.|||||||.||||..|||||||||||
RBAM_005860__ 1021 TGCCACAGTCAGCTGACGCTGGCTCAATTTATCAAAAGCGGAGAGTGGCA 1070
BSNT_00908___ 1080 AAAACACATCAACAGAATGAGAAAGCTTTACCGCAAAAAAAGAGCCATTG 1129
.|||||.||.|||||||||||||||||.|||||.|||||||||||..|..
RBAM_005860__ 1071 GAAACATATTAACAGAATGAGAAAGCTGTACCGGAAAAAAAGAGCGGTAT 1120
BSNT_00908___ 1130 TATTAGAGGCAGTGCAAAGGGAATTAGGAGAGCATGTCAGAATTCGCGGA 1179
||||||||||.||||...|.||..|.|||.|..|.|||||.|||||||||
RBAM_005860__ 1121 TATTAGAGGCCGTGCGGCGCGAGCTGGGACAATACGTCAGGATTCGCGGA 1170
BSNT_00908___ 1180 GAAAACTCTGGGCTTCGTATCTTACTTGACGTTTATTTGCCATTTGGTGA 1229
|||||.||.||.||.||.||.||||||||||||.|..||||.||..||||
RBAM_005860__ 1171 GAAAATTCCGGACTGCGGATTTTACTTGACGTTCAGCTGCCTTTCAGTGA 1220
BSNT_00908___ 1230 AAAAGAGTTAATTGAGAAGGCGAAAAAACATGGAGTGAAAATTTATCCTG 1279
|||||||.|.|||||.||||||.|..||||.||.||.|||||.|||||.|
RBAM_005860__ 1221 AAAAGAGCTGATTGAAAAGGCGGAGGAACAAGGCGTCAAAATCTATCCCG 1270
BSNT_00908___ 1280 TTTCTCTTTCTTATCAACATCA--TCCTCCCACAAAAACGGTCTCGCTCG 1327
|.||||||.|.||||||.|.|| || ||...||||||.||.||.||||
RBAM_005860__ 1271 TGTCTCTTACCTATCAAAAACAGGTC--CCTGAAAAAACAGTTTCCCTCG 1318
BSNT_00908___ 1328 GGTTTGCAGGGGTTTCTGAATCCGACATAAGAGAAGGCATAAAAAAACTG 1377
|.||.||.||||||||||||.||||.|||..|||||||||||||||||||
RBAM_005860__ 1319 GTTTCGCGGGGGTTTCTGAAACCGATATACAAGAAGGCATAAAAAAACTG 1368
BSNT_00908___ 1378 AAGGCTGCCTGGAAGATATGA 1398
|..||.||||||..|.|.|.|
RBAM_005860__ 1369 AGAGCCGCCTGGGCGCTGTAA 1389
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